HEADER RNA BINDING PROTEIN 07-NOV-17 6BJV TITLE CIRV P19 PROTEIN IN COMPLEX WITH SIRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA SILENCING SUPPRESSOR P19; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 19 KDA SYMPTOM SEVERITY MODULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'- COMPND 14 R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)- COMPND 15 3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNATION ITALIAN RINGSPOT VIRUS; SOURCE 3 ORGANISM_COMMON: CIRV; SOURCE 4 ORGANISM_TAXID: 39443; SOURCE 5 GENE: ORF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 11 ORGANISM_TAXID: 7049; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 15 ORGANISM_TAXID: 7049 KEYWDS VIRAL SUPPRESSOR, RNA SILENCING SIRNA BINDING PROTEIN P19, ALTERED KEYWDS 2 AFFINITY FOR MICRORNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.V.FOSS,N.SCHIRLE,J.P.PEZACKI,I.J.MACRAE REVDAT 3 04-OCT-23 6BJV 1 REMARK REVDAT 2 03-JUL-19 6BJV 1 JRNL REVDAT 1 16-JAN-19 6BJV 0 JRNL AUTH D.V.FOSS,N.T.SCHIRLE,I.J.MACRAE,J.P.PEZACKI JRNL TITL STRUCTURAL INSIGHTS INTO INTERACTIONS BETWEEN VIRAL JRNL TITL 2 SUPPRESSOR OF RNA SILENCING PROTEIN P19 MUTANTS AND SMALL JRNL TITL 3 RNAS. JRNL REF FEBS OPEN BIO V. 9 1042 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 31021526 JRNL DOI 10.1002/2211-5463.12644 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.CHENG,D.C.DANIELSON,N.NASHERI,R.SINGARAVELU,J.P.PEZACKI REMARK 1 TITL ENHANCED SPECIFICITY OF THE VIRAL SUPPRESSOR OF RNA REMARK 1 TITL 2 SILENCING PROTEIN P19 TOWARD SEQUESTERING OF HUMAN REMARK 1 TITL 3 MICRORNA-122 REMARK 1 REF BIOCHEMISTRY V. 50 7745 2011 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 21819044 REMARK 1 DOI 10.1021/BI2008273 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 18756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7021 40.9418 72.3532 REMARK 3 T TENSOR REMARK 3 T11: 0.8286 T22: 0.3329 REMARK 3 T33: 0.6438 T12: 0.0501 REMARK 3 T13: 0.1296 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 7.3017 L22: 6.3253 REMARK 3 L33: 4.0312 L12: -6.7805 REMARK 3 L13: -0.4278 L23: 0.5234 REMARK 3 S TENSOR REMARK 3 S11: 0.6808 S12: 0.3706 S13: -0.5721 REMARK 3 S21: 1.9804 S22: -0.0040 S23: 1.8480 REMARK 3 S31: -0.1916 S32: -1.4617 S33: 0.1883 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1754 46.0422 80.8602 REMARK 3 T TENSOR REMARK 3 T11: 1.2693 T22: 0.5025 REMARK 3 T33: 0.6015 T12: 0.0407 REMARK 3 T13: 0.2954 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 9.6276 L22: 4.6907 REMARK 3 L33: 7.7969 L12: -5.5415 REMARK 3 L13: 7.3518 L23: -2.4159 REMARK 3 S TENSOR REMARK 3 S11: -1.9546 S12: -1.2512 S13: 0.1076 REMARK 3 S21: 4.2336 S22: 0.3682 S23: 0.7864 REMARK 3 S31: 0.1139 S32: -0.5558 S33: 0.1927 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3632 63.3940 76.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.9597 T22: 0.4059 REMARK 3 T33: 0.5537 T12: 0.1097 REMARK 3 T13: 0.0473 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.4043 L22: 8.2706 REMARK 3 L33: 1.6506 L12: -4.9678 REMARK 3 L13: -1.1899 L23: 0.1872 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.0200 S13: 1.1063 REMARK 3 S21: 0.5898 S22: 0.1288 S23: -0.8354 REMARK 3 S31: -1.0672 S32: -0.2161 S33: -0.1472 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7208 71.5258 69.6209 REMARK 3 T TENSOR REMARK 3 T11: 2.2408 T22: 0.8104 REMARK 3 T33: 0.4611 T12: 0.2712 REMARK 3 T13: 0.3580 T23: 0.1441 REMARK 3 L TENSOR REMARK 3 L11: 6.5936 L22: 0.4401 REMARK 3 L33: 0.0632 L12: 1.7012 REMARK 3 L13: 0.4349 L23: 0.1207 REMARK 3 S TENSOR REMARK 3 S11: 0.8836 S12: 2.0289 S13: 1.6300 REMARK 3 S21: -0.6101 S22: 0.0015 S23: -0.1828 REMARK 3 S31: -1.7890 S32: 0.3662 S33: -0.6676 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6889 49.9827 75.6906 REMARK 3 T TENSOR REMARK 3 T11: 0.7143 T22: 0.3967 REMARK 3 T33: 0.3366 T12: 0.0370 REMARK 3 T13: -0.0060 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 6.0349 L22: 8.0638 REMARK 3 L33: 5.7837 L12: 1.0200 REMARK 3 L13: -0.5148 L23: 0.9523 REMARK 3 S TENSOR REMARK 3 S11: 0.3233 S12: -0.2230 S13: -0.1911 REMARK 3 S21: 1.7571 S22: -0.3653 S23: -0.3396 REMARK 3 S31: 0.3124 S32: 0.4403 S33: 0.0939 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3385 45.0361 66.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.5824 T22: 0.4149 REMARK 3 T33: 0.3189 T12: 0.1255 REMARK 3 T13: -0.0153 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 8.2718 L22: 9.8659 REMARK 3 L33: 5.0448 L12: 2.7106 REMARK 3 L13: -0.9906 L23: 0.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.2092 S12: -0.1097 S13: -0.5831 REMARK 3 S21: 0.0742 S22: 0.2184 S23: -0.6570 REMARK 3 S31: -0.0115 S32: 0.1860 S33: 0.0234 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9566 62.0159 68.4269 REMARK 3 T TENSOR REMARK 3 T11: 1.2762 T22: 0.6318 REMARK 3 T33: 1.0227 T12: -0.2822 REMARK 3 T13: -0.0236 T23: 0.1753 REMARK 3 L TENSOR REMARK 3 L11: 9.2499 L22: 4.8435 REMARK 3 L33: 5.3428 L12: 5.6418 REMARK 3 L13: -6.4374 L23: -5.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.6098 S12: 0.0214 S13: 2.1943 REMARK 3 S21: -0.1954 S22: 0.0780 S23: -0.3256 REMARK 3 S31: -3.0901 S32: 1.5108 S33: -0.2480 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7923 55.2674 38.3013 REMARK 3 T TENSOR REMARK 3 T11: 0.9252 T22: 0.4175 REMARK 3 T33: 0.5377 T12: 0.0750 REMARK 3 T13: 0.1063 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 5.3416 L22: 8.2213 REMARK 3 L33: 6.9529 L12: -5.3068 REMARK 3 L13: 0.6218 L23: 0.6848 REMARK 3 S TENSOR REMARK 3 S11: -0.5423 S12: -0.6342 S13: 1.0788 REMARK 3 S21: -1.0270 S22: 0.4145 S23: -0.1572 REMARK 3 S31: -1.8271 S32: -0.3039 S33: -0.4306 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5468 51.2078 36.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.4939 T22: 0.7155 REMARK 3 T33: 0.9983 T12: 0.0354 REMARK 3 T13: -0.0092 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 1.4675 L22: 3.7434 REMARK 3 L33: 9.6759 L12: -0.1000 REMARK 3 L13: -1.0303 L23: 5.8009 REMARK 3 S TENSOR REMARK 3 S11: 0.5032 S12: 1.4831 S13: -0.1560 REMARK 3 S21: -1.2417 S22: 0.6053 S23: -1.3579 REMARK 3 S31: -1.4595 S32: 0.5283 S33: -0.4951 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3527 37.1872 43.2258 REMARK 3 T TENSOR REMARK 3 T11: 0.7806 T22: 0.2500 REMARK 3 T33: 0.5252 T12: 0.0599 REMARK 3 T13: 0.2220 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 4.8011 L22: 1.7213 REMARK 3 L33: 2.7587 L12: -0.6724 REMARK 3 L13: 1.0060 L23: -0.3112 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: 0.6696 S13: -1.1836 REMARK 3 S21: 1.5374 S22: 0.1616 S23: -1.6989 REMARK 3 S31: 0.8574 S32: 0.0469 S33: -0.2701 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9990 28.8412 53.7752 REMARK 3 T TENSOR REMARK 3 T11: 1.1317 T22: 0.6727 REMARK 3 T33: 1.1784 T12: 0.4348 REMARK 3 T13: -0.0866 T23: 0.5711 REMARK 3 L TENSOR REMARK 3 L11: 6.1496 L22: 5.5453 REMARK 3 L33: 0.1245 L12: 5.8233 REMARK 3 L13: -0.9549 L23: -0.8549 REMARK 3 S TENSOR REMARK 3 S11: 0.6973 S12: -2.8105 S13: 0.1648 REMARK 3 S21: 1.0488 S22: 0.9399 S23: 1.2140 REMARK 3 S31: 1.6353 S32: -0.2843 S33: -0.6096 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6022 50.5224 48.6708 REMARK 3 T TENSOR REMARK 3 T11: 0.5051 T22: 0.2815 REMARK 3 T33: 0.4291 T12: -0.0124 REMARK 3 T13: 0.1231 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 6.1753 L22: 4.9834 REMARK 3 L33: 3.8830 L12: -5.4347 REMARK 3 L13: 1.5727 L23: -1.5537 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.2579 S13: 0.6892 REMARK 3 S21: -0.3424 S22: -0.1112 S23: -0.8022 REMARK 3 S31: -0.4713 S32: 0.3577 S33: 0.1725 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2270 53.8416 52.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.5521 T22: 0.3433 REMARK 3 T33: 0.2832 T12: -0.0415 REMARK 3 T13: 0.1184 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 5.8647 L22: 2.2106 REMARK 3 L33: 4.9044 L12: -1.7410 REMARK 3 L13: 0.5963 L23: 0.3561 REMARK 3 S TENSOR REMARK 3 S11: -0.3500 S12: -0.0798 S13: 0.2282 REMARK 3 S21: 0.4152 S22: 0.5311 S23: 0.5232 REMARK 3 S31: -0.6551 S32: -0.4751 S33: -0.0346 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5729 53.6736 58.9189 REMARK 3 T TENSOR REMARK 3 T11: 0.5322 T22: 0.3346 REMARK 3 T33: 0.5981 T12: -0.0816 REMARK 3 T13: 0.0272 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.7656 L22: 7.8312 REMARK 3 L33: 8.4660 L12: -0.7403 REMARK 3 L13: -1.0175 L23: 0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: -0.5528 S13: 0.6888 REMARK 3 S21: 0.1444 S22: 0.3268 S23: -1.0058 REMARK 3 S31: -0.8874 S32: 0.3394 S33: 0.0297 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1785 37.3954 42.9316 REMARK 3 T TENSOR REMARK 3 T11: 0.8523 T22: 0.4973 REMARK 3 T33: 0.6867 T12: 0.0264 REMARK 3 T13: 0.1558 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 2.1506 L22: 7.2811 REMARK 3 L33: 4.9213 L12: 2.1842 REMARK 3 L13: -1.5790 L23: 1.8504 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.4590 S13: -0.1948 REMARK 3 S21: 0.5034 S22: -0.2583 S23: 0.4656 REMARK 3 S31: -0.3546 S32: -0.3955 S33: 0.4268 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0839 50.4894 56.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.4586 REMARK 3 T33: 0.6302 T12: 0.1622 REMARK 3 T13: 0.0508 T23: -0.1335 REMARK 3 L TENSOR REMARK 3 L11: 2.0644 L22: 5.7124 REMARK 3 L33: 3.8400 L12: 0.6322 REMARK 3 L13: -0.2493 L23: 0.8680 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: 0.2792 S13: 0.3717 REMARK 3 S21: 0.0655 S22: -0.5362 S23: 0.8750 REMARK 3 S31: -0.2425 S32: -0.7454 S33: 0.4254 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3378 66.3486 67.0055 REMARK 3 T TENSOR REMARK 3 T11: 1.3863 T22: 0.5154 REMARK 3 T33: 0.9309 T12: 0.2116 REMARK 3 T13: 0.1850 T23: -0.1676 REMARK 3 L TENSOR REMARK 3 L11: 8.8430 L22: 0.2416 REMARK 3 L33: 9.0634 L12: -0.0501 REMARK 3 L13: -7.9142 L23: 0.6944 REMARK 3 S TENSOR REMARK 3 S11: 1.1375 S12: 1.2461 S13: 1.5612 REMARK 3 S21: 1.2982 S22: 0.8089 S23: -1.5133 REMARK 3 S31: -1.6398 S32: -1.2357 S33: -1.5229 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5298 61.3527 79.1232 REMARK 3 T TENSOR REMARK 3 T11: 2.1587 T22: 2.2190 REMARK 3 T33: 3.5618 T12: -1.1779 REMARK 3 T13: -0.2179 T23: 1.6013 REMARK 3 L TENSOR REMARK 3 L11: 5.7566 L22: 3.9129 REMARK 3 L33: 9.4236 L12: 0.8951 REMARK 3 L13: -6.6546 L23: 1.5277 REMARK 3 S TENSOR REMARK 3 S11: 0.1758 S12: 0.1330 S13: 0.1637 REMARK 3 S21: -0.5497 S22: 0.0869 S23: -0.4349 REMARK 3 S31: -0.4770 S32: 0.1990 S33: -0.2025 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7175 58.8147 66.5368 REMARK 3 T TENSOR REMARK 3 T11: 1.0897 T22: 0.6004 REMARK 3 T33: 0.5754 T12: 0.1783 REMARK 3 T13: 0.0891 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 8.2991 L22: 3.8411 REMARK 3 L33: 3.0449 L12: -4.5005 REMARK 3 L13: 1.0554 L23: -2.2645 REMARK 3 S TENSOR REMARK 3 S11: 0.9374 S12: 0.8800 S13: -0.0455 REMARK 3 S21: -0.7580 S22: -0.7943 S23: -0.0787 REMARK 3 S31: 0.8558 S32: -0.5319 S33: 0.0118 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4126 46.2090 52.8425 REMARK 3 T TENSOR REMARK 3 T11: 0.8127 T22: 0.4190 REMARK 3 T33: 0.7084 T12: 0.1073 REMARK 3 T13: -0.0194 T23: -0.2026 REMARK 3 L TENSOR REMARK 3 L11: 6.4348 L22: 5.3999 REMARK 3 L33: 3.5359 L12: -2.2701 REMARK 3 L13: 0.3876 L23: -2.9979 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.3483 S13: 0.5398 REMARK 3 S21: -0.1301 S22: -0.5465 S23: -0.3502 REMARK 3 S31: 0.1273 S32: -0.4742 S33: 0.5573 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1640 29.0282 39.3925 REMARK 3 T TENSOR REMARK 3 T11: 1.1324 T22: 0.7358 REMARK 3 T33: 1.0211 T12: 0.0808 REMARK 3 T13: -0.0760 T23: -0.2987 REMARK 3 L TENSOR REMARK 3 L11: 5.5433 L22: 5.9937 REMARK 3 L33: 9.5199 L12: 5.7465 REMARK 3 L13: -6.3913 L23: -7.2010 REMARK 3 S TENSOR REMARK 3 S11: -1.7780 S12: -0.1476 S13: 0.5865 REMARK 3 S21: -0.7472 S22: 1.0360 S23: -0.5971 REMARK 3 S31: 3.0434 S32: -0.0311 S33: 0.9500 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 21 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5017 22.7888 28.9123 REMARK 3 T TENSOR REMARK 3 T11: 3.9080 T22: 1.2303 REMARK 3 T33: 1.2836 T12: -0.1545 REMARK 3 T13: 1.2422 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 3.5585 L22: 3.1477 REMARK 3 L33: 3.1880 L12: 2.0570 REMARK 3 L13: -0.8943 L23: -2.9281 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: -0.0670 S13: 0.3747 REMARK 3 S21: 0.8515 S22: 0.3959 S23: 0.3473 REMARK 3 S31: -2.3487 S32: -0.1677 S33: -0.5781 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.198 REMARK 200 RESOLUTION RANGE LOW (A) : 46.807 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1RPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-12% PEG 1500, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, 10-40 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 150 REMARK 465 GLU A 151 REMARK 465 VAL A 152 REMARK 465 GLU A 153 REMARK 465 SER A 154 REMARK 465 ASN A 155 REMARK 465 VAL A 156 REMARK 465 SER A 157 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 CYS A 160 REMARK 465 PRO A 161 REMARK 465 GLU A 162 REMARK 465 GLY A 163 REMARK 465 ILE A 164 REMARK 465 GLU A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 149 REMARK 465 VAL B 150 REMARK 465 GLU B 151 REMARK 465 VAL B 152 REMARK 465 GLU B 153 REMARK 465 SER B 154 REMARK 465 ASN B 155 REMARK 465 VAL B 156 REMARK 465 SER B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 465 CYS B 160 REMARK 465 PRO B 161 REMARK 465 GLU B 162 REMARK 465 GLY B 163 REMARK 465 ILE B 164 REMARK 465 GLU B 165 REMARK 465 THR B 166 REMARK 465 PHE B 167 REMARK 465 LYS B 168 REMARK 465 LYS B 169 REMARK 465 GLU B 170 REMARK 465 SER B 171 REMARK 465 GLU B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 41 O HOH B 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH11 ARG A 101 O GLY B 24 1556 1.52 REMARK 500 OE2 GLU A 12 O2' U D 21 1566 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U C 1 P U C 1 OP3 -0.125 REMARK 500 C D 1 P C D 1 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 -47.26 167.75 REMARK 500 ASN A 46 30.91 -86.11 REMARK 500 THR A 49 71.54 -108.40 REMARK 500 ASN A 50 115.64 -35.40 REMARK 500 SER A 51 -166.63 -166.69 REMARK 500 ASP A 54 118.81 -160.49 REMARK 500 SER B 23 121.26 -172.79 REMARK 500 LEU B 44 9.27 -63.17 REMARK 500 TYR B 45 45.83 -102.13 REMARK 500 GLU B 48 -0.87 79.66 REMARK 500 ASN B 52 -27.07 -144.47 REMARK 500 ASP B 54 -75.64 -78.38 REMARK 500 ALA B 105 -121.86 60.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 6BJV A 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJV B 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJV C 1 21 PDB 6BJV 6BJV 1 21 DBREF 6BJV D 1 21 PDB 6BJV 6BJV 1 21 SEQRES 1 A 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 A 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 A 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 A 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 A 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 A 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 A 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 A 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 A 172 ALA ASN GLN VAL GLY CYS THR TYR SER ILE ARG PHE ARG SEQRES 10 A 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 A 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 A 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 A 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 A 172 GLU SER GLU SEQRES 1 B 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 B 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 B 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 B 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 B 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 B 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 B 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 B 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 B 172 ALA ASN GLN VAL GLY CYS THR TYR SER ILE ARG PHE ARG SEQRES 10 B 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 B 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 B 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 B 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 B 172 GLU SER GLU SEQRES 1 C 21 U C G A A G U A U U C C G SEQRES 2 C 21 C G U A C G U U SEQRES 1 D 21 C G U A C G C G G A A U A SEQRES 2 D 21 C U U C G A U U FORMUL 5 HOH *65(H2 O) HELIX 1 AA1 GLN A 6 GLU A 17 1 12 HELIX 2 AA2 SER A 38 ASN A 46 1 9 HELIX 3 AA3 THR A 79 GLY A 88 1 10 HELIX 4 AA4 THR A 91 SER A 100 1 10 HELIX 5 AA5 THR A 129 LEU A 145 1 17 HELIX 6 AA6 GLY B 7 ARG B 18 1 12 HELIX 7 AA7 SER B 38 LEU B 44 1 7 HELIX 8 AA8 THR B 79 GLY B 88 1 10 HELIX 9 AA9 THR B 91 ARG B 101 1 11 HELIX 10 AB1 THR B 129 LEU B 145 1 17 SHEET 1 AA1 8 VAL A 68 ARG A 75 0 SHEET 2 AA1 8 GLY A 58 PHE A 65 -1 N TRP A 63 O PHE A 70 SHEET 3 AA1 8 GLY A 109 PHE A 116 -1 O ARG A 115 N LYS A 60 SHEET 4 AA1 8 VAL A 119 GLY A 126 -1 O ILE A 123 N TYR A 112 SHEET 5 AA1 8 VAL B 119 GLY B 126 -1 O SER B 120 N SER A 124 SHEET 6 AA1 8 GLY B 109 PHE B 116 -1 N TYR B 112 O ILE B 123 SHEET 7 AA1 8 PHE B 59 PHE B 65 -1 N GLY B 64 O THR B 111 SHEET 8 AA1 8 VAL B 68 LEU B 74 -1 O PHE B 70 N TRP B 63 CISPEP 1 GLU A 2 ARG A 3 0 1.62 CISPEP 2 ARG A 3 ALA A 4 0 8.10 CISPEP 3 ALA A 4 ILE A 5 0 0.35 CISPEP 4 GLY A 21 GLY A 22 0 3.41 CISPEP 5 GLY A 22 SER A 23 0 19.75 CISPEP 6 SER A 23 GLY A 24 0 -1.61 CISPEP 7 ASP A 54 ASN A 55 0 0.19 CRYST1 46.586 46.997 54.883 109.44 111.11 96.78 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021466 0.002554 0.010198 0.00000 SCALE2 0.000000 0.021428 0.009498 0.00000 SCALE3 0.000000 0.000000 0.021364 0.00000