HEADER SIGNALING PROTEIN 08-NOV-17 6BK9 TITLE CRYSTAL STRUCTURE OF SQUID ARRESTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VISUAL ARRESTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DORYTEUTHIS PEALEII; SOURCE 3 ORGANISM_COMMON: LONGFIN INSHORE SQUID; SOURCE 4 ORGANISM_TAXID: 1051067; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARRESTIN, PHOSPHORYLATION INDEPENDENT, SQUID, INVERTEBRATE, KEYWDS 2 RHODOPSIN, ADAPTER PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.T.EGER,A.BANDYOPADHYAY,R.S.YEDIDI,O.P.ERNST REVDAT 3 04-OCT-23 6BK9 1 REMARK REVDAT 2 24-OCT-18 6BK9 1 JRNL REVDAT 1 19-SEP-18 6BK9 0 JRNL AUTH A.BANDYOPADHYAY,N.VAN EPS,B.T.EGER,S.RAUSCHER,R.S.YEDIDI, JRNL AUTH 2 T.MORONI,G.M.WEST,K.A.ROBINSON,P.R.GRIFFIN,J.MITCHELL, JRNL AUTH 3 O.P.ERNST JRNL TITL A NOVEL POLAR CORE AND WEAKLY FIXED C-TAIL IN SQUID ARRESTIN JRNL TITL 2 PROVIDE NEW INSIGHT INTO INTERACTION WITH RHODOPSIN. JRNL REF J. MOL. BIOL. V. 430 4102 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30120952 JRNL DOI 10.1016/J.JMB.2018.08.009 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.356 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.295 REMARK 3 R VALUE (WORKING SET) : 0.292 REMARK 3 FREE R VALUE : 0.342 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.901 REMARK 3 FREE R VALUE TEST SET COUNT : 504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0058 - 4.7580 1.00 2595 124 0.3329 0.3742 REMARK 3 2 4.7580 - 3.7787 1.00 2440 112 0.2625 0.2914 REMARK 3 3 3.7787 - 3.3017 1.00 2379 137 0.2237 0.2979 REMARK 3 4 3.3017 - 3.0001 1.00 2365 131 0.2859 0.4075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2054 REMARK 3 ANGLE : 1.110 2795 REMARK 3 CHIRALITY : 0.050 339 REMARK 3 PLANARITY : 0.007 354 REMARK 3 DIHEDRAL : 13.779 1233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.0779 -19.5950 -10.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.7067 T22: 0.5419 REMARK 3 T33: 0.4544 T12: 0.1009 REMARK 3 T13: 0.1185 T23: -0.1134 REMARK 3 L TENSOR REMARK 3 L11: 2.8933 L22: 2.4400 REMARK 3 L33: 4.5568 L12: -0.4063 REMARK 3 L13: 2.1701 L23: -1.1775 REMARK 3 S TENSOR REMARK 3 S11: 0.3906 S12: 0.3912 S13: -0.2149 REMARK 3 S21: -0.1131 S22: 0.0690 S23: 0.0720 REMARK 3 S31: 0.1981 S32: 0.4185 S33: -0.3531 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULPHATE, 300 MM REMARK 280 KH2PO4, 100 MM BIS-TRIS PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.51467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.25733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.88600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.62867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.14333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.51467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.25733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.62867 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.88600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.14333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 TRP A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 PRO A -5 REMARK 465 GLN A -4 REMARK 465 PHE A -3 REMARK 465 GLU A -2 REMARK 465 LYS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 44 REMARK 465 PRO A 45 REMARK 465 ASP A 46 REMARK 465 TYR A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 ASN A 50 REMARK 465 ARG A 51 REMARK 465 ASP A 67 REMARK 465 MET A 68 REMARK 465 ASP A 69 REMARK 465 VAL A 70 REMARK 465 SER A 132 REMARK 465 GLU A 133 REMARK 465 TYR A 134 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 GLU A 189 REMARK 465 PHE A 190 REMARK 465 LYS A 191 REMARK 465 PHE A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 ALA A 196 REMARK 465 ASP A 221 REMARK 465 ASN A 222 REMARK 465 PRO A 223 REMARK 465 THR A 224 REMARK 465 SER A 225 REMARK 465 LYS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 GLU A 259 REMARK 465 GLU A 260 REMARK 465 GLY A 261 REMARK 465 PHE A 262 REMARK 465 PRO A 263 REMARK 465 ILE A 264 REMARK 465 GLU A 265 REMARK 465 PRO A 266 REMARK 465 ASN A 267 REMARK 465 THR A 268 REMARK 465 SER A 269 REMARK 465 GLY A 270 REMARK 465 PHE A 271 REMARK 465 THR A 284 REMARK 465 LYS A 285 REMARK 465 ARG A 286 REMARK 465 ARG A 287 REMARK 465 ALA A 288 REMARK 465 GLY A 289 REMARK 465 ASP A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 ASN A 312 REMARK 465 VAL A 313 REMARK 465 ASP A 314 REMARK 465 LYS A 315 REMARK 465 GLU A 316 REMARK 465 ASN A 317 REMARK 465 LEU A 318 REMARK 465 GLY A 319 REMARK 465 LEU A 332 REMARK 465 GLY A 333 REMARK 465 PHE A 334 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 GLY A 337 REMARK 465 ALA A 357 REMARK 465 GLN A 358 REMARK 465 PRO A 359 REMARK 465 GLU A 360 REMARK 465 ALA A 361 REMARK 465 ARG A 362 REMARK 465 GLU A 363 REMARK 465 GLY A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 SER A 13 OG REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 SER A 74 OG REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LEU A 97 CG CD1 CD2 REMARK 470 THR A 98 OG1 CG2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 ALA A 138 CB REMARK 470 VAL A 150 CG1 CG2 REMARK 470 ASN A 153 CG OD1 ND2 REMARK 470 ASP A 156 CG OD1 OD2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 SER A 163 OG REMARK 470 PHE A 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 178 CB OG REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 SER A 187 OG REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LEU A 199 CG CD1 CD2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 CYS A 201 SG REMARK 470 THR A 202 OG1 CG2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 208 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 214 CG SD CE REMARK 470 SER A 217 OG REMARK 470 VAL A 218 CG1 CG2 REMARK 470 VAL A 220 CG1 CG2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 244 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 VAL A 280 CG1 CG2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 VAL A 283 CG1 CG2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ILE A 328 CG1 CG2 CD1 REMARK 470 MET A 339 CG SD CE REMARK 470 VAL A 343 CG1 CG2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 169 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 31 -54.75 73.66 REMARK 500 PRO A 89 102.88 -59.50 REMARK 500 CYS A 140 147.60 -171.73 REMARK 500 SER A 151 -176.39 -172.73 REMARK 500 ASN A 153 148.00 174.02 REMARK 500 SER A 178 -104.39 -93.33 REMARK 500 GLN A 181 90.78 57.62 REMARK 500 SER A 187 109.59 -165.38 REMARK 500 LYS A 205 128.09 63.60 REMARK 500 TYR A 244 -86.60 57.63 REMARK 500 GLU A 282 2.73 -64.32 REMARK 500 MET A 302 -165.75 -123.07 REMARK 500 ALA A 305 127.06 66.55 REMARK 500 PRO A 349 -179.91 -62.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 DBREF 6BK9 A 1 368 UNP Q963B5 Q963B5_DORPE 1 368 SEQADV 6BK9 MET A -11 UNP Q963B5 INITIATING METHIONINE SEQADV 6BK9 GLY A -10 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 SER A -9 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 TRP A -8 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 SER A -7 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 HIS A -6 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 PRO A -5 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 GLN A -4 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 PHE A -3 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 GLU A -2 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 LYS A -1 UNP Q963B5 EXPRESSION TAG SEQADV 6BK9 GLY A 0 UNP Q963B5 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER TRP SER HIS PRO GLN PHE GLU LYS GLY MET SEQRES 2 A 380 VAL THR LYS LYS ALA LYS VAL TYR LYS LYS ALA SER PRO SEQRES 3 A 380 ASN GLY LYS LEU THR THR TYR LEU ALA LYS ARG ASP TYR SEQRES 4 A 380 TYR ASP HIS LYS GLU TRP GLN ASP ASN ILE ASP GLY VAL SEQRES 5 A 380 CYS VAL VAL ASP PRO ASP TYR LEU LYS ASN ARG LYS VAL SEQRES 6 A 380 PHE GLY LEU ILE VAL VAL ALA PHE ARG TYR GLY ARG GLU SEQRES 7 A 380 ASP MET ASP VAL MET GLY VAL SER PHE ARG LYS ASP PHE SEQRES 8 A 380 ALA VAL LYS GLN MET GLN ILE TYR PRO PRO LEU GLU GLU SEQRES 9 A 380 ASN GLN ARG PRO LEU THR LYS LEU GLN ALA LYS LEU LEU SEQRES 10 A 380 ASN LYS LEU GLY GLU ASN ALA VAL PRO PHE HIS TYR ASP SEQRES 11 A 380 LEU PRO THR ASN THR PRO ASP THR VAL CYS ILE GLN PRO SEQRES 12 A 380 SER GLU TYR ASP GLY GLY ALA PRO CYS GLY VAL ASP TYR SEQRES 13 A 380 GLN VAL THR THR TYR VAL SER GLN ASN MET ASP ASP LYS SEQRES 14 A 380 ILE HIS LYS ARG ASN SER VAL SER LEU SER ILE ARG LYS SEQRES 15 A 380 LEU SER TYR PHE GLU PHE GLY SER ASP GLU GLN PRO ARG SEQRES 16 A 380 GLY GLU ILE SER LYS GLU PHE LYS PHE THR SER GLY ALA SEQRES 17 A 380 MET LYS LEU GLU CYS THR LEU ASP LYS ALA ARG TYR TYR SEQRES 18 A 380 SER GLY GLU SER MET ASN ILE SER VAL CYS VAL ASP ASN SEQRES 19 A 380 PRO THR SER LYS LYS ALA LYS ARG ILE LYS ILE GLN ILE SEQRES 20 A 380 ILE GLN LEU ALA ASP ILE CYS LEU TYR GLU THR VAL THR SEQRES 21 A 380 TYR LYS SER VAL VAL THR GLU LEU GLU THR GLU GLU GLY SEQRES 22 A 380 PHE PRO ILE GLU PRO ASN THR SER GLY PHE CYS GLN VAL SEQRES 23 A 380 TYR LYS LEU ARG PRO VAL LEU GLU VAL THR LYS ARG ARG SEQRES 24 A 380 ALA GLY LEU ALA LEU ASN GLY LYS VAL LYS TYR GLU ASP SEQRES 25 A 380 THR MET LEU ALA ALA SER THR GLU ASP ALA GLY ASN VAL SEQRES 26 A 380 ASP LYS GLU ASN LEU GLY VAL VAL VAL SER TYR LYS VAL SEQRES 27 A 380 ARG ILE LYS MET THR LEU GLY PHE GLY SER GLY ASP MET SEQRES 28 A 380 LEU LEU GLU VAL PRO PHE LYS LEU CYS PRO ALA ARG LEU SEQRES 29 A 380 LYS GLY ARG LEU ALA GLN PRO GLU ALA ARG GLU GLY ASP SEQRES 30 A 380 ASP ALA GLU HET CL A 401 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- HELIX 1 AA1 THR A 98 LEU A 108 1 11 SHEET 1 AA1 4 TYR A 9 ALA A 12 0 SHEET 2 AA1 4 THR A 19 LEU A 22 -1 O LEU A 22 N TYR A 9 SHEET 3 AA1 4 ILE A 37 VAL A 42 -1 O VAL A 40 N TYR A 21 SHEET 4 AA1 4 ALA A 112 TYR A 117 -1 O VAL A 113 N CYS A 41 SHEET 1 AA2 5 ASP A 26 ASP A 29 0 SHEET 2 AA2 5 SER A 163 SER A 172 1 O LEU A 171 N ASP A 29 SHEET 3 AA2 5 CYS A 140 VAL A 150 -1 N VAL A 146 O LEU A 166 SHEET 4 AA2 5 VAL A 53 TYR A 63 -1 N PHE A 54 O TYR A 149 SHEET 5 AA2 5 PHE A 75 TYR A 87 -1 O MET A 84 N GLY A 55 SHEET 1 AA3 5 ASP A 26 ASP A 29 0 SHEET 2 AA3 5 SER A 163 SER A 172 1 O LEU A 171 N ASP A 29 SHEET 3 AA3 5 CYS A 140 VAL A 150 -1 N VAL A 146 O LEU A 166 SHEET 4 AA3 5 VAL A 127 ILE A 129 -1 N VAL A 127 O VAL A 142 SHEET 5 AA3 5 ALA A 291 LEU A 292 -1 O LEU A 292 N CYS A 128 SHEET 1 AA4 4 ARG A 183 GLY A 184 0 SHEET 2 AA4 4 GLU A 200 LEU A 203 -1 O CYS A 201 N GLY A 184 SHEET 3 AA4 4 MET A 214 VAL A 220 -1 O SER A 217 N THR A 202 SHEET 4 AA4 4 GLN A 273 LEU A 277 -1 O LEU A 277 N MET A 214 SHEET 1 AA5 5 THR A 246 THR A 258 0 SHEET 2 AA5 5 ARG A 230 CYS A 242 -1 N GLN A 237 O SER A 251 SHEET 3 AA5 5 VAL A 321 MET A 330 -1 O SER A 323 N LEU A 238 SHEET 4 AA5 5 MET A 339 CYS A 348 -1 O VAL A 343 N VAL A 326 SHEET 5 AA5 5 ARG A 207 TYR A 209 1 N TYR A 208 O CYS A 348 SSBOND 1 CYS A 219 CYS A 272 1555 1555 2.04 CISPEP 1 TYR A 87 PRO A 88 0 -6.71 SITE 1 AC1 5 ARG A 25 ARG A 169 GLY A 294 LYS A 295 SITE 2 AC1 5 TYR A 298 CRYST1 103.508 103.508 153.772 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009661 0.005578 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006503 0.00000