HEADER STRUCTURAL PROTEIN 09-NOV-17 6BL7 TITLE S. CEREVISIAE STU2 COILED COIL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN STU2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPPRESSOR OF TUBULIN 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STU2, YLR045C, L2108; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINETOCHORE MICROTUBULE POLYMERASE MICROTUBULE ASSOCIATED PROTEIN KEYWDS 2 COILED COIL, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.C.SLEP REVDAT 4 01-JAN-20 6BL7 1 REMARK REVDAT 3 14-FEB-18 6BL7 1 JRNL REVDAT 2 17-JAN-18 6BL7 1 REMARK REVDAT 1 13-DEC-17 6BL7 0 JRNL AUTH K.P.HAASE,J.C.FOX,A.E.BYRNES,R.C.ADIKES,S.K.SPEED,J.HAASE, JRNL AUTH 2 B.FRIEDMAN,D.M.COOK,K.BLOOM,N.M.RUSAN,K.C.SLEP JRNL TITL STU2 USES A 15-NM PARALLEL COILED COIL FOR KINETOCHORE JRNL TITL 2 LOCALIZATION AND CONCOMITANT REGULATION OF THE MITOTIC JRNL TITL 3 SPINDLE. JRNL REF MOL. BIOL. CELL V. 29 285 2018 JRNL REFN ESSN 1939-4586 JRNL PMID 29187574 JRNL DOI 10.1091/MBC.E17-01-0057 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 8374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3269 - 4.5419 0.98 1345 150 0.2637 0.2783 REMARK 3 2 4.5419 - 3.6054 1.00 1312 144 0.2171 0.2332 REMARK 3 3 3.6054 - 3.1497 0.99 1295 144 0.2683 0.3413 REMARK 3 4 3.1497 - 2.8618 0.97 1251 140 0.2853 0.3168 REMARK 3 5 2.8618 - 2.6567 0.93 1212 133 0.3052 0.3603 REMARK 3 6 2.6567 - 2.5001 0.89 1126 122 0.2671 0.3611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1700 REMARK 3 ANGLE : 0.720 2261 REMARK 3 CHIRALITY : 0.036 247 REMARK 3 PLANARITY : 0.001 296 REMARK 3 DIHEDRAL : 16.263 721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 30.4692 14.9593 37.5088 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0511 REMARK 3 T33: 0.0521 T12: 0.0070 REMARK 3 T13: 0.0319 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.0182 REMARK 3 L33: 0.0110 L12: 0.0685 REMARK 3 L13: 0.0028 L23: 0.0314 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.0657 S13: -0.0099 REMARK 3 S21: 0.0352 S22: 0.0186 S23: -0.0330 REMARK 3 S31: -0.0218 S32: 0.0439 S33: -0.0239 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41300 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% W/V PEG8000, 200 MM MAGNESIUM REMARK 280 ACETATE, 100 MM SODIUM CACODYLATE, PH 5.75, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.05600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 651 REMARK 465 SER A 652 REMARK 465 HIS A 653 REMARK 465 MSE A 654 REMARK 465 ASP A 655 REMARK 465 LYS A 656 REMARK 465 LYS A 756 REMARK 465 LYS A 757 REMARK 465 ARG A 758 REMARK 465 ASN A 759 REMARK 465 ASP A 760 REMARK 465 GLY B 651 REMARK 465 SER B 652 REMARK 465 HIS B 653 REMARK 465 MSE B 654 REMARK 465 ASP B 655 REMARK 465 LYS B 656 REMARK 465 ASN B 657 REMARK 465 LYS B 756 REMARK 465 LYS B 757 REMARK 465 ARG B 758 REMARK 465 ASN B 759 REMARK 465 ASP B 760 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 666 O HOH A 801 1.81 REMARK 500 ND2 ASN A 691 O HOH A 802 1.93 REMARK 500 ND2 ASN A 673 O HOH A 803 2.09 REMARK 500 ND2 ASN A 732 O HOH A 804 2.15 REMARK 500 OD2 ASP B 730 O HOH B 801 2.16 REMARK 500 OE1 GLU A 663 O HOH A 805 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 806 O HOH B 811 2647 1.83 REMARK 500 O HOH B 808 O HOH B 815 1554 2.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 6BL7 A 655 760 UNP P46675 STU2_YEAST 655 760 DBREF 6BL7 B 655 760 UNP P46675 STU2_YEAST 655 760 SEQADV 6BL7 GLY A 651 UNP P46675 EXPRESSION TAG SEQADV 6BL7 SER A 652 UNP P46675 EXPRESSION TAG SEQADV 6BL7 HIS A 653 UNP P46675 EXPRESSION TAG SEQADV 6BL7 MSE A 654 UNP P46675 EXPRESSION TAG SEQADV 6BL7 GLY B 651 UNP P46675 EXPRESSION TAG SEQADV 6BL7 SER B 652 UNP P46675 EXPRESSION TAG SEQADV 6BL7 HIS B 653 UNP P46675 EXPRESSION TAG SEQADV 6BL7 MSE B 654 UNP P46675 EXPRESSION TAG SEQRES 1 A 110 GLY SER HIS MSE ASP LYS ASN GLU LYS LEU ILE GLU GLU SEQRES 2 A 110 TYR LYS TYR ARG LEU GLN LYS LEU GLN ASN ASP GLU MSE SEQRES 3 A 110 ILE TRP THR LYS GLU ARG GLN SER LEU LEU GLU LYS MSE SEQRES 4 A 110 ASN ASN THR GLU ASN TYR LYS ILE GLU MSE ILE LYS GLU SEQRES 5 A 110 ASN GLU MSE LEU ARG GLU GLN LEU LYS GLU ALA GLN SER SEQRES 6 A 110 LYS LEU ASN GLU LYS ASN ILE GLN LEU ARG SER LYS GLU SEQRES 7 A 110 ILE ASP VAL ASN LYS LEU SER ASP ARG VAL LEU SER LEU SEQRES 8 A 110 GLU ASN GLU LEU ARG ASN MSE GLU ILE GLU LEU ASP ARG SEQRES 9 A 110 ASN LYS LYS ARG ASN ASP SEQRES 1 B 110 GLY SER HIS MSE ASP LYS ASN GLU LYS LEU ILE GLU GLU SEQRES 2 B 110 TYR LYS TYR ARG LEU GLN LYS LEU GLN ASN ASP GLU MSE SEQRES 3 B 110 ILE TRP THR LYS GLU ARG GLN SER LEU LEU GLU LYS MSE SEQRES 4 B 110 ASN ASN THR GLU ASN TYR LYS ILE GLU MSE ILE LYS GLU SEQRES 5 B 110 ASN GLU MSE LEU ARG GLU GLN LEU LYS GLU ALA GLN SER SEQRES 6 B 110 LYS LEU ASN GLU LYS ASN ILE GLN LEU ARG SER LYS GLU SEQRES 7 B 110 ILE ASP VAL ASN LYS LEU SER ASP ARG VAL LEU SER LEU SEQRES 8 B 110 GLU ASN GLU LEU ARG ASN MSE GLU ILE GLU LEU ASP ARG SEQRES 9 B 110 ASN LYS LYS ARG ASN ASP MODRES 6BL7 MSE A 676 MET MODIFIED RESIDUE MODRES 6BL7 MSE A 689 MET MODIFIED RESIDUE MODRES 6BL7 MSE A 699 MET MODIFIED RESIDUE MODRES 6BL7 MSE A 705 MET MODIFIED RESIDUE MODRES 6BL7 MSE A 748 MET MODIFIED RESIDUE MODRES 6BL7 MSE B 676 MET MODIFIED RESIDUE MODRES 6BL7 MSE B 689 MET MODIFIED RESIDUE MODRES 6BL7 MSE B 699 MET MODIFIED RESIDUE MODRES 6BL7 MSE B 705 MET MODIFIED RESIDUE MODRES 6BL7 MSE B 748 MET MODIFIED RESIDUE HET MSE A 676 8 HET MSE A 689 8 HET MSE A 699 8 HET MSE A 705 8 HET MSE A 748 8 HET MSE B 676 8 HET MSE B 689 8 HET MSE B 699 8 HET MSE B 705 8 HET MSE B 748 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *25(H2 O) HELIX 1 AA1 ASN A 657 ASN A 755 1 99 HELIX 2 AA2 LYS B 659 ARG B 754 1 96 LINK C GLU A 675 N MSE A 676 1555 1555 1.33 LINK C MSE A 676 N ILE A 677 1555 1555 1.33 LINK C LYS A 688 N MSE A 689 1555 1555 1.33 LINK C MSE A 689 N ASN A 690 1555 1555 1.33 LINK C GLU A 698 N MSE A 699 1555 1555 1.33 LINK C MSE A 699 N ILE A 700 1555 1555 1.33 LINK C GLU A 704 N MSE A 705 1555 1555 1.33 LINK C MSE A 705 N LEU A 706 1555 1555 1.33 LINK C ASN A 747 N MSE A 748 1555 1555 1.33 LINK C MSE A 748 N GLU A 749 1555 1555 1.33 LINK C GLU B 675 N MSE B 676 1555 1555 1.33 LINK C MSE B 676 N ILE B 677 1555 1555 1.33 LINK C LYS B 688 N MSE B 689 1555 1555 1.33 LINK C MSE B 689 N ASN B 690 1555 1555 1.33 LINK C GLU B 698 N MSE B 699 1555 1555 1.33 LINK C MSE B 699 N ILE B 700 1555 1555 1.33 LINK C GLU B 704 N MSE B 705 1555 1555 1.33 LINK C MSE B 705 N LEU B 706 1555 1555 1.33 LINK C ASN B 747 N MSE B 748 1555 1555 1.33 LINK C MSE B 748 N GLU B 749 1555 1555 1.33 CRYST1 57.252 30.112 72.856 90.00 102.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017467 0.000000 0.003738 0.00000 SCALE2 0.000000 0.033209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014036 0.00000