HEADER HYDROLASE/HYDROLASE INHIBITOR 10-NOV-17 6BLF TITLE PDE2 COMPLEXED WITH 2-[6-FLUORO-8-METHYLSULFONYL-9-[(1R)-1-[4- TITLE 2 (TRIFLUOROMETHYL)PHENYL]ETHYL]-1,2,3,4-TETRAHYDROCARBAZOL-1-YL]ACETIC TITLE 3 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT 3',5'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLIC GMP-STIMULATED PHOSPHODIESTERASE,CGSPDE; COMPND 5 EC: 3.1.4.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE2A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PHOSPHODIESTERASE, INHIBITOR, COMPLEX, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.P.SU REVDAT 2 13-MAR-24 6BLF 1 LINK REVDAT 1 14-NOV-18 6BLF 0 JRNL AUTH H.P.SU JRNL TITL HYDROLASE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2125 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3052 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2216 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2910 REMARK 3 BIN R VALUE (WORKING SET) : 0.2194 REMARK 3 BIN FREE R VALUE : 0.2694 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 142 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11590 REMARK 3 B22 (A**2) : -0.97410 REMARK 3 B33 (A**2) : 0.85820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.226 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.222 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5907 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8008 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2066 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 140 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 910 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5907 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 760 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7122 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 29.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 15% PEG 8000, 2% REMARK 280 ETHYLENE GLYCOL, 10 MM TCEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 GLU A 554 REMARK 465 ASN A 555 REMARK 465 LEU A 556 REMARK 465 TYR A 557 REMARK 465 PHE A 558 REMARK 465 GLN A 559 REMARK 465 GLY A 560 REMARK 465 GLU A 561 REMARK 465 LEU A 562 REMARK 465 ASP A 573 REMARK 465 ASP A 574 REMARK 465 ASP A 575 REMARK 465 ASP A 576 REMARK 465 LYS A 577 REMARK 465 SER A 578 REMARK 465 ASP A 917 REMARK 465 GLU A 918 REMARK 465 GLU A 919 REMARK 465 MET B 547 REMARK 465 HIS B 548 REMARK 465 HIS B 549 REMARK 465 HIS B 550 REMARK 465 HIS B 551 REMARK 465 HIS B 552 REMARK 465 HIS B 553 REMARK 465 GLU B 554 REMARK 465 ASN B 555 REMARK 465 LEU B 556 REMARK 465 TYR B 557 REMARK 465 PHE B 558 REMARK 465 GLN B 559 REMARK 465 GLY B 560 REMARK 465 GLU B 561 REMARK 465 ASP B 574 REMARK 465 ASP B 575 REMARK 465 ASP B 576 REMARK 465 LYS B 577 REMARK 465 SER B 578 REMARK 465 ASP B 579 REMARK 465 ASP B 580 REMARK 465 GLU B 918 REMARK 465 GLU B 919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 564 OG1 CG2 REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 LYS A 584 CG CD CE NZ REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 HIS A 587 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 588 CG OD1 OD2 REMARK 470 ARG A 751 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 752 CG CD CE NZ REMARK 470 LYS A 778 CG CD CE NZ REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 LYS A 901 CG CD CE NZ REMARK 470 LEU B 562 CG CD1 CD2 REMARK 470 GLU B 581 CG CD OE1 OE2 REMARK 470 THR B 583 OG1 CG2 REMARK 470 LYS B 584 CG CD CE NZ REMARK 470 LYS B 778 CG CD CE NZ REMARK 470 LYS B 782 CG CD CE NZ REMARK 470 LYS B 793 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 588 40.31 -147.51 REMARK 500 ASP A 652 50.14 -115.41 REMARK 500 TYR A 680 -30.60 -136.26 REMARK 500 HIS A 741 107.47 -58.81 REMARK 500 ILE A 866 -65.08 -108.92 REMARK 500 ILE B 866 -67.93 -109.77 REMARK 500 LYS B 901 9.33 -159.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1217 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 660 NE2 REMARK 620 2 HIS A 696 NE2 95.4 REMARK 620 3 ASP A 697 OD2 89.8 86.5 REMARK 620 4 ASP A 808 OD1 95.4 91.3 174.6 REMARK 620 5 HOH A1137 O 161.0 102.2 84.4 91.3 REMARK 620 6 HOH A1147 O 95.0 167.9 99.9 81.5 68.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 697 OD1 REMARK 620 2 HOH A1102 O 86.0 REMARK 620 3 HOH A1125 O 88.8 92.5 REMARK 620 4 HOH A1137 O 94.1 98.6 168.7 REMARK 620 5 HOH A1156 O 168.7 83.8 86.7 92.4 REMARK 620 6 HOH A1167 O 100.5 172.3 83.6 85.1 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 660 NE2 REMARK 620 2 HIS B 696 NE2 94.6 REMARK 620 3 ASP B 697 OD2 90.6 85.9 REMARK 620 4 ASP B 808 OD1 96.9 91.8 172.2 REMARK 620 5 HOH B1111 O 161.3 103.5 86.0 87.4 REMARK 620 6 HOH B1176 O 95.2 169.6 97.5 83.6 67.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 697 OD1 REMARK 620 2 HOH B1103 O 83.0 REMARK 620 3 HOH B1111 O 98.2 98.0 REMARK 620 4 HOH B1121 O 166.8 85.7 89.9 REMARK 620 5 HOH B1169 O 92.0 92.4 166.2 81.8 REMARK 620 6 HOH B1183 O 98.0 177.4 84.2 93.1 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DY1 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DY1 B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 DBREF 6BLF A 578 919 UNP O00408 PDE2A_HUMAN 322 663 DBREF 6BLF B 578 919 UNP O00408 PDE2A_HUMAN 322 663 SEQADV 6BLF MET A 547 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 548 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 549 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 550 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 551 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 552 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS A 553 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLU A 554 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASN A 555 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU A 556 UNP O00408 EXPRESSION TAG SEQADV 6BLF TYR A 557 UNP O00408 EXPRESSION TAG SEQADV 6BLF PHE A 558 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLN A 559 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLY A 560 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLU A 561 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU A 562 UNP O00408 EXPRESSION TAG SEQADV 6BLF SER A 563 UNP O00408 EXPRESSION TAG SEQADV 6BLF THR A 564 UNP O00408 EXPRESSION TAG SEQADV 6BLF SER A 565 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU A 566 UNP O00408 EXPRESSION TAG SEQADV 6BLF TYR A 567 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS A 568 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS A 569 UNP O00408 EXPRESSION TAG SEQADV 6BLF ALA A 570 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLY A 571 UNP O00408 EXPRESSION TAG SEQADV 6BLF PHE A 572 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP A 573 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP A 574 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP A 575 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP A 576 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS A 577 UNP O00408 EXPRESSION TAG SEQADV 6BLF MET B 547 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 548 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 549 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 550 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 551 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 552 UNP O00408 EXPRESSION TAG SEQADV 6BLF HIS B 553 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLU B 554 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASN B 555 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU B 556 UNP O00408 EXPRESSION TAG SEQADV 6BLF TYR B 557 UNP O00408 EXPRESSION TAG SEQADV 6BLF PHE B 558 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLN B 559 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLY B 560 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLU B 561 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU B 562 UNP O00408 EXPRESSION TAG SEQADV 6BLF SER B 563 UNP O00408 EXPRESSION TAG SEQADV 6BLF THR B 564 UNP O00408 EXPRESSION TAG SEQADV 6BLF SER B 565 UNP O00408 EXPRESSION TAG SEQADV 6BLF LEU B 566 UNP O00408 EXPRESSION TAG SEQADV 6BLF TYR B 567 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS B 568 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS B 569 UNP O00408 EXPRESSION TAG SEQADV 6BLF ALA B 570 UNP O00408 EXPRESSION TAG SEQADV 6BLF GLY B 571 UNP O00408 EXPRESSION TAG SEQADV 6BLF PHE B 572 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP B 573 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP B 574 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP B 575 UNP O00408 EXPRESSION TAG SEQADV 6BLF ASP B 576 UNP O00408 EXPRESSION TAG SEQADV 6BLF LYS B 577 UNP O00408 EXPRESSION TAG SEQRES 1 A 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 A 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 A 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 A 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 A 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 A 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 A 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 A 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 A 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 A 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 A 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 A 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 A 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 A 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 A 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 A 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 A 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 A 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 A 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 A 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 A 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 A 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 A 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 A 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 A 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 A 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 A 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 A 373 ASN SER LEU ASP PHE LEU ASP GLU GLU SEQRES 1 B 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 B 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 B 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 B 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 B 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 B 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 B 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 B 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 B 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 B 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 B 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 B 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 B 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 B 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 B 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 B 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 B 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 B 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 B 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 B 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 B 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 B 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 B 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 B 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 B 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 B 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 B 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 B 373 ASN SER LEU ASP PHE LEU ASP GLU GLU HET DY1 A1000 34 HET ZN A1001 1 HET MG A1002 1 HET DY1 B1000 34 HET ZN B1001 1 HET MG B1002 1 HETNAM DY1 [(1S)-6-FLUORO-8-(METHYLSULFONYL)-9-{(1R)-1-[4- HETNAM 2 DY1 (TRIFLUOROMETHYL)PHENYL]ETHYL}-2,3,4,9-TETRAHYDRO-1H- HETNAM 3 DY1 CARBAZOL-1-YL]ACETIC ACID HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 DY1 2(C24 H23 F4 N O4 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *212(H2 O) HELIX 1 AA1 ASP A 580 GLY A 589 1 10 HELIX 2 AA2 PRO A 592 ASP A 597 1 6 HELIX 3 AA3 THR A 606 LEU A 610 5 5 HELIX 4 AA4 PRO A 611 ASP A 613 5 3 HELIX 5 AA5 ASP A 614 MET A 626 1 13 HELIX 6 AA6 ASN A 627 TYR A 632 1 6 HELIX 7 AA7 ASP A 635 GLY A 649 1 15 HELIX 8 AA8 ASN A 657 LEU A 675 1 19 HELIX 9 AA9 GLU A 676 TYR A 680 5 5 HELIX 10 AB1 GLU A 682 HIS A 696 1 15 HELIX 11 AB2 ASN A 704 SER A 711 1 8 HELIX 12 AB3 SER A 713 SER A 720 1 8 HELIX 13 AB4 SER A 721 GLY A 723 5 3 HELIX 14 AB5 SER A 724 ASN A 739 1 16 HELIX 15 AB6 SER A 750 ALA A 767 1 18 HELIX 16 AB7 ASP A 769 GLY A 787 1 19 HELIX 17 AB8 ASN A 792 LEU A 809 1 18 HELIX 18 AB9 SER A 810 LYS A 814 5 5 HELIX 19 AC1 GLY A 815 MET A 840 1 26 HELIX 20 AC2 MET A 845 ASP A 849 5 5 HELIX 21 AC3 TYR A 854 ILE A 866 1 13 HELIX 22 AC4 ILE A 866 PHE A 878 1 13 HELIX 23 AC5 ALA A 881 SER A 899 1 19 HELIX 24 AC6 LEU B 562 LEU B 566 5 5 HELIX 25 AC7 TYR B 582 HIS B 587 1 6 HELIX 26 AC8 PRO B 592 ASP B 597 1 6 HELIX 27 AC9 THR B 606 LEU B 610 5 5 HELIX 28 AD1 PRO B 611 ASP B 613 5 3 HELIX 29 AD2 ASP B 614 MET B 626 1 13 HELIX 30 AD3 ASN B 627 TYR B 632 1 6 HELIX 31 AD4 ASP B 635 GLY B 649 1 15 HELIX 32 AD5 ASN B 657 GLU B 676 1 20 HELIX 33 AD6 LEU B 677 TYR B 680 5 4 HELIX 34 AD7 GLU B 682 HIS B 696 1 15 HELIX 35 AD8 ASN B 704 SER B 711 1 8 HELIX 36 AD9 SER B 713 SER B 720 1 8 HELIX 37 AE1 SER B 721 GLY B 723 5 3 HELIX 38 AE2 SER B 724 ASN B 739 1 16 HELIX 39 AE3 SER B 750 ALA B 767 1 18 HELIX 40 AE4 ASP B 769 GLY B 787 1 19 HELIX 41 AE5 ASN B 792 LEU B 809 1 18 HELIX 42 AE6 SER B 810 LYS B 814 5 5 HELIX 43 AE7 GLY B 815 MET B 840 1 26 HELIX 44 AE8 MET B 845 ASP B 849 5 5 HELIX 45 AE9 TYR B 854 ILE B 866 1 13 HELIX 46 AF1 ILE B 866 PHE B 878 1 13 HELIX 47 AF2 ALA B 881 HIS B 900 1 20 HELIX 48 AF3 LEU B 913 ASP B 917 5 5 LINK NE2 HIS A 660 ZN ZN A1001 1555 1555 2.16 LINK NE2 HIS A 696 ZN ZN A1001 1555 1555 2.06 LINK OD2 ASP A 697 ZN ZN A1001 1555 1555 2.01 LINK OD1 ASP A 697 MG MG A1002 1555 1555 2.04 LINK OD1 ASP A 808 ZN ZN A1001 1555 1555 2.23 LINK ZN ZN A1001 O HOH A1137 1555 1555 2.38 LINK ZN ZN A1001 O HOH A1147 1555 1555 2.33 LINK MG MG A1002 O HOH A1102 1555 1555 2.07 LINK MG MG A1002 O HOH A1125 1555 1555 2.13 LINK MG MG A1002 O HOH A1137 1555 1555 1.98 LINK MG MG A1002 O HOH A1156 1555 1555 2.06 LINK MG MG A1002 O HOH A1167 1555 1555 2.14 LINK NE2 HIS B 660 ZN ZN B1001 1555 1555 2.23 LINK NE2 HIS B 696 ZN ZN B1001 1555 1555 2.18 LINK OD2 ASP B 697 ZN ZN B1001 1555 1555 2.04 LINK OD1 ASP B 697 MG MG B1002 1555 1555 2.01 LINK OD1 ASP B 808 ZN ZN B1001 1555 1555 2.13 LINK ZN ZN B1001 O HOH B1111 1555 1555 2.44 LINK ZN ZN B1001 O HOH B1176 1555 1555 2.36 LINK MG MG B1002 O HOH B1103 1555 1555 2.19 LINK MG MG B1002 O HOH B1111 1555 1555 2.09 LINK MG MG B1002 O HOH B1121 1555 1555 2.27 LINK MG MG B1002 O HOH B1169 1555 1555 2.11 LINK MG MG B1002 O HOH B1183 1555 1555 2.10 SITE 1 AC1 16 TYR A 655 HIS A 656 ASN A 704 THR A 768 SITE 2 AC1 16 LEU A 770 THR A 805 LEU A 809 ILE A 822 SITE 3 AC1 16 ILE A 826 TYR A 827 GLN A 859 PHE A 862 SITE 4 AC1 16 HOH A1136 HOH A1159 HOH A1160 HOH A1178 SITE 1 AC2 6 HIS A 660 HIS A 696 ASP A 697 ASP A 808 SITE 2 AC2 6 HOH A1137 HOH A1147 SITE 1 AC3 6 ASP A 697 HOH A1102 HOH A1125 HOH A1137 SITE 2 AC3 6 HOH A1156 HOH A1167 SITE 1 AC4 14 TYR B 655 ASN B 704 THR B 768 LEU B 770 SITE 2 AC4 14 THR B 805 ASP B 808 LEU B 809 ILE B 826 SITE 3 AC4 14 TYR B 827 GLN B 859 PHE B 862 HOH B1128 SITE 4 AC4 14 HOH B1158 HOH B1171 SITE 1 AC5 6 HIS B 660 HIS B 696 ASP B 697 ASP B 808 SITE 2 AC5 6 HOH B1111 HOH B1176 SITE 1 AC6 6 ASP B 697 HOH B1103 HOH B1111 HOH B1121 SITE 2 AC6 6 HOH B1169 HOH B1183 CRYST1 72.030 95.830 104.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009603 0.00000