HEADER TRANSFERASE 14-NOV-17 6BMC TITLE THE STRUCTURE OF A DIMERIC TYPE II DAH7PS ASSOCIATED WITH PYOCYANIN TITLE 2 BIOSYNTHESIS IN PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PHZC, AROH_3, AOY09_05716, CAZ10_37830, SOURCE 5 PAERUG_E15_LONDON_28_01_14_08300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS TRANSFERASE, DAH7PS, 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE KEYWDS 2 SYNTHASE, SHIKIMATE PATHWAY, PYOCYANIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR O.W.STERRITT,G.B.JAMESON,E.J.PARKER REVDAT 4 04-OCT-23 6BMC 1 LINK REVDAT 3 20-NOV-19 6BMC 1 LINK REVDAT 2 28-NOV-18 6BMC 1 JRNL REVDAT 1 03-OCT-18 6BMC 0 JRNL AUTH O.W.STERRITT,E.J.M.LANG,S.A.KESSANS,T.M.RYAN,B.DEMELER, JRNL AUTH 2 G.B.JAMESON,E.J.PARKER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE ENTRY JRNL TITL 2 POINT TO PYOCYANIN BIOSYNTHESIS INPSEUDOMONAS JRNL TITL 3 AERUGINOSADEFINES A NEW 3-DEOXY-D-ARABINO-HEPTULOSONATE JRNL TITL 4 7-PHOSPHATE SYNTHASE SUBCLASS. JRNL REF BIOSCI. REP. V. 38 2018 JRNL REFN ISSN 1573-4935 JRNL PMID 30242059 JRNL DOI 10.1042/BSR20181605 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.51000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : -2.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.416 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5793 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5534 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7888 ; 0.926 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12611 ; 3.621 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 6.669 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;32.603 ;22.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;18.075 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;17.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 895 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6638 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1306 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3034 ; 2.589 ; 9.012 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3033 ; 2.589 ; 9.012 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3782 ; 4.435 ;13.508 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3783 ; 4.434 ;13.508 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2759 ; 2.719 ; 9.159 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2758 ; 2.708 ; 9.159 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4106 ; 4.535 ;13.647 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6608 ; 7.154 ;71.308 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6609 ; 7.155 ;71.313 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95363 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 85.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 2.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5UXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.4 M NAF, 1 MM COCL2, 1 MM PE, 16 REMARK 280 -22 % PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.87850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.86100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.87850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.86100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.27500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.87850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.86100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.27500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.87850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.86100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 120 REMARK 465 GLN A 121 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 173 REMARK 465 GLN A 174 REMARK 465 GLU A 175 REMARK 465 ALA A 176 REMARK 465 ASN A 177 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 ILE A 394 REMARK 465 PRO A 395 REMARK 465 SER A 396 REMARK 465 ALA A 397 REMARK 465 THR A 398 REMARK 465 PHE A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 THR A 403 REMARK 465 VAL A 404 REMARK 465 ALA A 405 REMARK 465 VAL B 122 REMARK 465 GLY B 123 REMARK 465 ALA B 171 REMARK 465 SER B 172 REMARK 465 GLY B 173 REMARK 465 GLN B 174 REMARK 465 GLU B 175 REMARK 465 ALA B 176 REMARK 465 ASN B 177 REMARK 465 GLY B 390 REMARK 465 ALA B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 465 ILE B 394 REMARK 465 PRO B 395 REMARK 465 SER B 396 REMARK 465 ALA B 397 REMARK 465 THR B 398 REMARK 465 PHE B 399 REMARK 465 PRO B 400 REMARK 465 LEU B 401 REMARK 465 GLU B 402 REMARK 465 THR B 403 REMARK 465 VAL B 404 REMARK 465 ALA B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLU A 286 CD OE1 OE2 REMARK 470 ARG A 289 NE CZ NH1 NH2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LEU A 330 CG CD1 CD2 REMARK 470 VAL A 338 CG1 CG2 REMARK 470 HIS A 362 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 363 CG CD OE1 NE2 REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 33 NE CZ NH1 NH2 REMARK 470 ASN B 78 CG OD1 ND2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 HIS B 141 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 ARG B 247 NE CZ NH1 NH2 REMARK 470 ARG B 256 CD NE CZ NH1 NH2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 ARG B 289 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 313 CG OD1 ND2 REMARK 470 LYS B 314 CG CD CE NZ REMARK 470 LEU B 317 CG CD1 CD2 REMARK 470 ARG B 319 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 362 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 363 CG CD OE1 NE2 REMARK 470 ARG B 366 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 367 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 380 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 110 69.74 -69.29 REMARK 500 GLN A 125 78.35 -161.96 REMARK 500 TRP A 168 38.34 -98.15 REMARK 500 GLU A 232 54.55 -116.68 REMARK 500 GLU A 244 53.60 -95.28 REMARK 500 ASN A 313 -158.45 -79.77 REMARK 500 CYS A 372 -121.81 -133.80 REMARK 500 VAL B 135 -54.75 -121.01 REMARK 500 HIS B 141 -155.23 -86.55 REMARK 500 SER B 179 74.52 -106.72 REMARK 500 LEU B 188 -53.10 -135.58 REMARK 500 GLU B 232 54.80 -114.94 REMARK 500 PRO B 294 71.59 -68.17 REMARK 500 MET B 302 -71.31 -77.48 REMARK 500 ASP B 357 -166.03 -166.66 REMARK 500 VAL B 364 -8.66 -56.09 REMARK 500 CYS B 372 -118.14 -124.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 303 NE2 REMARK 620 2 GLU A 345 OE1 95.6 REMARK 620 3 GLU A 345 OE2 85.9 51.9 REMARK 620 4 ASP A 373 OD2 86.0 151.9 100.5 REMARK 620 5 HOH A 601 O 69.8 128.8 155.7 78.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 303 NE2 REMARK 620 2 GLU B 345 OE1 80.3 REMARK 620 3 GLU B 345 OE2 105.8 56.1 REMARK 620 4 HOH B 602 O 105.5 160.6 135.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B7O RELATED DB: PDB REMARK 900 RELATED ID: 5UXM RELATED DB: PDB REMARK 900 USED IN MOLECULAR REPLACEMENT REMARK 900 RELATED ID: 5UXN RELATED DB: PDB REMARK 900 RELATED ID: 5UXO RELATED DB: PDB DBREF 6BMC A 1 405 UNP G3XCJ9 G3XCJ9_PSEAI 1 405 DBREF 6BMC B 1 405 UNP G3XCJ9 G3XCJ9_PSEAI 1 405 SEQRES 1 A 405 MET ASP ASP LEU LEU GLN ARG VAL ARG ARG CYS GLU ALA SEQRES 2 A 405 LEU GLN GLN PRO GLU TRP GLY ASP PRO SER ARG LEU ARG SEQRES 3 A 405 ASP VAL GLN ALA TYR LEU ARG GLY SER PRO ALA LEU ILE SEQRES 4 A 405 ARG ALA GLY ASP ILE LEU ALA LEU ARG ALA THR LEU ALA SEQRES 5 A 405 ARG VAL ALA ARG GLY GLU ALA LEU VAL VAL GLN CYS GLY SEQRES 6 A 405 ASP CYS ALA GLU ASP MET ASP ASP HIS HIS ALA GLU ASN SEQRES 7 A 405 VAL ALA ARG LYS ALA ALA VAL LEU GLU LEU LEU ALA GLY SEQRES 8 A 405 ALA LEU ARG LEU ALA GLY ARG ARG PRO VAL ILE ARG VAL SEQRES 9 A 405 GLY ARG ILE ALA GLY GLN TYR ALA LYS PRO ARG SER LYS SEQRES 10 A 405 PRO HIS GLU GLN VAL GLY GLU GLN THR LEU PRO VAL TYR SEQRES 11 A 405 ARG GLY ASP MET VAL ASN GLY ARG GLU ALA HIS ALA GLU SEQRES 12 A 405 GLN ARG ARG ALA ASP PRO GLN ARG ILE LEU LYS GLY TYR SEQRES 13 A 405 ALA ALA ALA ARG ASN ILE MET ARG HIS LEU GLY TRP ASP SEQRES 14 A 405 ALA ALA SER GLY GLN GLU ALA ASN ALA SER PRO VAL TRP SEQRES 15 A 405 THR SER HIS GLU MET LEU LEU LEU ASP TYR GLU LEU SER SEQRES 16 A 405 MET LEU ARG GLU ASP GLU GLN ARG ARG VAL TYR LEU GLY SEQRES 17 A 405 SER THR HIS TRP PRO TRP ILE GLY GLU ARG THR ARG GLN SEQRES 18 A 405 VAL ASP GLY ALA HIS VAL ALA LEU LEU ALA GLU VAL LEU SEQRES 19 A 405 ASN PRO VAL ALA CYS LYS VAL GLY PRO GLU ILE GLY ARG SEQRES 20 A 405 ASP GLN LEU LEU ALA LEU CYS GLU ARG LEU ASP PRO ARG SEQRES 21 A 405 ARG GLU PRO GLY ARG LEU THR LEU ILE ALA ARG MET GLY SEQRES 22 A 405 ALA GLN LYS VAL GLY GLU ARG LEU PRO PRO LEU VAL GLU SEQRES 23 A 405 ALA VAL ARG ALA ALA GLY HIS PRO VAL ILE TRP LEU SER SEQRES 24 A 405 ASP PRO MET HIS GLY ASN THR ILE VAL ALA PRO CYS GLY SEQRES 25 A 405 ASN LYS THR ARG LEU VAL ARG SER ILE ALA GLU GLU VAL SEQRES 26 A 405 ALA ALA PHE ARG LEU ALA VAL SER GLY SER GLY GLY VAL SEQRES 27 A 405 ALA ALA GLY LEU HIS LEU GLU THR THR PRO ASP ASP VAL SEQRES 28 A 405 THR GLU CYS VAL ALA ASP SER SER GLY LEU HIS GLN VAL SEQRES 29 A 405 SER ARG HIS TYR THR SER LEU CYS ASP PRO ARG LEU ASN SEQRES 30 A 405 PRO TRP GLN ALA LEU SER ALA VAL MET ALA TRP SER GLY SEQRES 31 A 405 ALA GLU ALA ILE PRO SER ALA THR PHE PRO LEU GLU THR SEQRES 32 A 405 VAL ALA SEQRES 1 B 405 MET ASP ASP LEU LEU GLN ARG VAL ARG ARG CYS GLU ALA SEQRES 2 B 405 LEU GLN GLN PRO GLU TRP GLY ASP PRO SER ARG LEU ARG SEQRES 3 B 405 ASP VAL GLN ALA TYR LEU ARG GLY SER PRO ALA LEU ILE SEQRES 4 B 405 ARG ALA GLY ASP ILE LEU ALA LEU ARG ALA THR LEU ALA SEQRES 5 B 405 ARG VAL ALA ARG GLY GLU ALA LEU VAL VAL GLN CYS GLY SEQRES 6 B 405 ASP CYS ALA GLU ASP MET ASP ASP HIS HIS ALA GLU ASN SEQRES 7 B 405 VAL ALA ARG LYS ALA ALA VAL LEU GLU LEU LEU ALA GLY SEQRES 8 B 405 ALA LEU ARG LEU ALA GLY ARG ARG PRO VAL ILE ARG VAL SEQRES 9 B 405 GLY ARG ILE ALA GLY GLN TYR ALA LYS PRO ARG SER LYS SEQRES 10 B 405 PRO HIS GLU GLN VAL GLY GLU GLN THR LEU PRO VAL TYR SEQRES 11 B 405 ARG GLY ASP MET VAL ASN GLY ARG GLU ALA HIS ALA GLU SEQRES 12 B 405 GLN ARG ARG ALA ASP PRO GLN ARG ILE LEU LYS GLY TYR SEQRES 13 B 405 ALA ALA ALA ARG ASN ILE MET ARG HIS LEU GLY TRP ASP SEQRES 14 B 405 ALA ALA SER GLY GLN GLU ALA ASN ALA SER PRO VAL TRP SEQRES 15 B 405 THR SER HIS GLU MET LEU LEU LEU ASP TYR GLU LEU SER SEQRES 16 B 405 MET LEU ARG GLU ASP GLU GLN ARG ARG VAL TYR LEU GLY SEQRES 17 B 405 SER THR HIS TRP PRO TRP ILE GLY GLU ARG THR ARG GLN SEQRES 18 B 405 VAL ASP GLY ALA HIS VAL ALA LEU LEU ALA GLU VAL LEU SEQRES 19 B 405 ASN PRO VAL ALA CYS LYS VAL GLY PRO GLU ILE GLY ARG SEQRES 20 B 405 ASP GLN LEU LEU ALA LEU CYS GLU ARG LEU ASP PRO ARG SEQRES 21 B 405 ARG GLU PRO GLY ARG LEU THR LEU ILE ALA ARG MET GLY SEQRES 22 B 405 ALA GLN LYS VAL GLY GLU ARG LEU PRO PRO LEU VAL GLU SEQRES 23 B 405 ALA VAL ARG ALA ALA GLY HIS PRO VAL ILE TRP LEU SER SEQRES 24 B 405 ASP PRO MET HIS GLY ASN THR ILE VAL ALA PRO CYS GLY SEQRES 25 B 405 ASN LYS THR ARG LEU VAL ARG SER ILE ALA GLU GLU VAL SEQRES 26 B 405 ALA ALA PHE ARG LEU ALA VAL SER GLY SER GLY GLY VAL SEQRES 27 B 405 ALA ALA GLY LEU HIS LEU GLU THR THR PRO ASP ASP VAL SEQRES 28 B 405 THR GLU CYS VAL ALA ASP SER SER GLY LEU HIS GLN VAL SEQRES 29 B 405 SER ARG HIS TYR THR SER LEU CYS ASP PRO ARG LEU ASN SEQRES 30 B 405 PRO TRP GLN ALA LEU SER ALA VAL MET ALA TRP SER GLY SEQRES 31 B 405 ALA GLU ALA ILE PRO SER ALA THR PHE PRO LEU GLU THR SEQRES 32 B 405 VAL ALA HET PEP A 501 10 HET CO A 502 1 HET CO B 501 1 HET PEP B 502 10 HET CL B 503 1 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM CO COBALT (II) ION HETNAM CL CHLORIDE ION FORMUL 3 PEP 2(C3 H5 O6 P) FORMUL 4 CO 2(CO 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *13(H2 O) HELIX 1 AA1 ASP A 2 ARG A 10 1 9 HELIX 2 AA2 ASP A 21 GLY A 34 1 14 HELIX 3 AA3 ARG A 40 GLY A 57 1 18 HELIX 4 AA4 HIS A 75 ARG A 98 1 24 HELIX 5 AA5 PRO A 149 GLY A 167 1 19 HELIX 6 AA6 LEU A 190 MET A 196 1 7 HELIX 7 AA7 GLY A 216 ARG A 220 5 5 HELIX 8 AA8 GLY A 224 GLU A 232 1 9 HELIX 9 AA9 GLY A 246 ASP A 258 1 13 HELIX 10 AB1 LYS A 276 GLY A 292 1 17 HELIX 11 AB2 LEU A 317 GLY A 336 1 20 HELIX 12 AB3 ASP A 357 VAL A 364 5 8 HELIX 13 AB4 ASN A 377 ALA A 387 1 11 HELIX 14 AB5 ASP B 2 CYS B 11 1 10 HELIX 15 AB6 ASP B 21 GLY B 34 1 14 HELIX 16 AB7 ARG B 40 ARG B 56 1 17 HELIX 17 AB8 HIS B 75 ARG B 98 1 24 HELIX 18 AB9 PRO B 149 GLY B 167 1 19 HELIX 19 AC1 LEU B 189 MET B 196 1 8 HELIX 20 AC2 GLY B 216 ARG B 220 5 5 HELIX 21 AC3 GLY B 224 GLU B 232 1 9 HELIX 22 AC4 GLY B 246 ASP B 258 1 13 HELIX 23 AC5 LYS B 276 GLY B 292 1 17 HELIX 24 AC6 MET B 302 THR B 306 5 5 HELIX 25 AC7 LEU B 317 GLY B 336 1 20 HELIX 26 AC8 HIS B 362 ARG B 366 5 5 HELIX 27 AC9 ASN B 377 ALA B 387 1 11 SHEET 1 AA1 8 VAL A 181 SER A 184 0 SHEET 2 AA1 8 VAL A 101 ARG A 106 1 N GLY A 105 O TRP A 182 SHEET 3 AA1 8 LEU A 60 GLY A 65 1 N LEU A 60 O ILE A 102 SHEET 4 AA1 8 VAL A 338 GLU A 345 1 O LEU A 342 N GLN A 63 SHEET 5 AA1 8 ILE A 296 SER A 299 1 N SER A 299 O HIS A 343 SHEET 6 AA1 8 LEU A 266 ALA A 270 1 N LEU A 268 O ILE A 296 SHEET 7 AA1 8 VAL A 237 VAL A 241 1 N CYS A 239 O ILE A 269 SHEET 8 AA1 8 TRP A 214 ILE A 215 1 N ILE A 215 O LYS A 240 SHEET 1 AA2 2 LEU A 197 GLU A 199 0 SHEET 2 AA2 2 VAL A 205 LEU A 207 -1 O TYR A 206 N ARG A 198 SHEET 1 AA3 2 ILE A 307 VAL A 308 0 SHEET 2 AA3 2 LYS A 314 THR A 315 -1 O THR A 315 N ILE A 307 SHEET 1 AA4 8 VAL B 181 SER B 184 0 SHEET 2 AA4 8 VAL B 101 ARG B 106 1 N GLY B 105 O TRP B 182 SHEET 3 AA4 8 LEU B 60 GLY B 65 1 N LEU B 60 O ILE B 102 SHEET 4 AA4 8 VAL B 338 GLU B 345 1 O LEU B 342 N GLN B 63 SHEET 5 AA4 8 ILE B 296 SER B 299 1 N SER B 299 O HIS B 343 SHEET 6 AA4 8 LEU B 266 ALA B 270 1 N LEU B 268 O ILE B 296 SHEET 7 AA4 8 VAL B 237 VAL B 241 1 N CYS B 239 O ILE B 269 SHEET 8 AA4 8 TRP B 214 ILE B 215 1 N ILE B 215 O LYS B 240 SHEET 1 AA5 2 LEU B 197 GLU B 199 0 SHEET 2 AA5 2 VAL B 205 LEU B 207 -1 O TYR B 206 N ARG B 198 LINK NE2 HIS A 303 CO CO A 502 1555 1555 2.39 LINK OE1 GLU A 345 CO CO A 502 1555 1555 2.17 LINK OE2 GLU A 345 CO CO A 502 1555 1555 2.70 LINK OD2 ASP A 373 CO CO A 502 1555 1555 2.36 LINK CO CO A 502 O HOH A 601 1555 1555 1.83 LINK NE2 HIS B 303 CO CO B 501 1555 1555 2.12 LINK OE1 GLU B 345 CO CO B 501 1555 1555 2.55 LINK OE2 GLU B 345 CO CO B 501 1555 1555 1.92 LINK CO CO B 501 O HOH B 602 1555 1555 2.11 SITE 1 AC1 10 ARG A 106 LYS A 113 GLY A 216 GLU A 217 SITE 2 AC1 10 ARG A 218 LYS A 240 ARG A 271 HIS A 303 SITE 3 AC1 10 CO A 502 HOH A 601 SITE 1 AC2 7 CYS A 67 LYS A 113 HIS A 303 GLU A 345 SITE 2 AC2 7 ASP A 373 PEP A 501 HOH A 601 SITE 1 AC3 6 CYS B 67 LYS B 113 HIS B 303 GLU B 345 SITE 2 AC3 6 ASP B 373 HOH B 602 SITE 1 AC4 10 ARG B 106 LYS B 113 GLU B 186 TRP B 214 SITE 2 AC4 10 GLY B 216 GLU B 217 ARG B 218 LYS B 240 SITE 3 AC4 10 ARG B 271 HIS B 303 SITE 1 AC5 2 HIS B 75 HIS B 165 CRYST1 53.757 169.722 170.550 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005863 0.00000