HEADER OXYGEN STORAGE 14-NOV-17 6BMG TITLE STRUCTURE OF RECOMBINANT DWARF SPERM WHALE MYOGLOBIN (OXY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOGIA SIMA; SOURCE 3 ORGANISM_COMMON: DWARF SPERM WHALE; SOURCE 4 ORGANISM_TAXID: 9752; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVP80K KEYWDS MYOGLOBIN, OXYGEN STORAGE-TRANSPORT COMPLEX, GLOBIN, OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR P.P.SAMUEL,M.D.MILLER,W.XU,S.ALVARADO,G.N.PHILLIPS JR.,J.S.OLSON REVDAT 3 04-OCT-23 6BMG 1 LINK REVDAT 2 01-JAN-20 6BMG 1 REMARK REVDAT 1 29-NOV-17 6BMG 0 JRNL AUTH P.P.SAMUEL,M.D.MILLER,W.XU,S.ALVARADO,G.N.PHILLIPS JR., JRNL AUTH 2 J.S.OLSON JRNL TITL STRUCTURE OF RECOMBINANT DWARF SPERM WHALE MYOGLOBIN (OXY) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.P.SAMUEL,L.P.SMITH,G.N.PHILLIPS,J.S.OLSON REMARK 1 TITL APOGLOBIN STABILITY IS THE MAJOR FACTOR GOVERNING BOTH REMARK 1 TITL 2 CELL-FREE AND IN VIVO EXPRESSION OF HOLOMYOGLOBIN. REMARK 1 REF J. BIOL. CHEM. V. 290 23479 2015 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 26205820 REMARK 1 DOI 10.1074/JBC.M115.672204 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.E.SCOTT,E.V.PASTER,J.S.OLSON REMARK 1 TITL THE STABILITIES OF MAMMALIAN APOMYOGLOBINS VARY OVER A REMARK 1 TITL 2 600-FOLD RANGE AND CAN BE ENHANCED BY COMPARATIVE REMARK 1 TITL 3 MUTAGENESIS. REMARK 1 REF J. BIOL. CHEM. V. 275 27129 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10852902 REMARK 1 DOI 10.1074/JBC.M000452200 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2896 - 5.3362 1.00 2612 140 0.1482 0.1744 REMARK 3 2 5.3362 - 4.2396 1.00 2626 138 0.1189 0.1810 REMARK 3 3 4.2396 - 3.7049 1.00 2605 138 0.1173 0.1460 REMARK 3 4 3.7049 - 3.3667 1.00 2624 140 0.1314 0.1563 REMARK 3 5 3.3667 - 3.1257 1.00 2615 138 0.1446 0.2037 REMARK 3 6 3.1257 - 2.9416 0.99 2605 140 0.1513 0.1956 REMARK 3 7 2.9416 - 2.7944 1.00 2605 138 0.1524 0.1982 REMARK 3 8 2.7944 - 2.6728 1.00 2617 139 0.1397 0.1599 REMARK 3 9 2.6728 - 2.5700 1.00 2641 129 0.1402 0.1783 REMARK 3 10 2.5700 - 2.4813 1.00 2607 140 0.1386 0.1762 REMARK 3 11 2.4813 - 2.4038 1.00 2616 141 0.1404 0.1715 REMARK 3 12 2.4038 - 2.3351 1.00 2634 137 0.1445 0.1751 REMARK 3 13 2.3351 - 2.2737 1.00 2589 144 0.1529 0.1826 REMARK 3 14 2.2737 - 2.2182 0.99 2625 139 0.1625 0.1830 REMARK 3 15 2.2182 - 2.1678 1.00 2573 135 0.1853 0.2227 REMARK 3 16 2.1678 - 2.1217 1.00 2657 140 0.1879 0.2600 REMARK 3 17 2.1217 - 2.0792 1.00 2630 139 0.2035 0.2273 REMARK 3 18 2.0792 - 2.0400 1.00 2601 142 0.2303 0.2662 REMARK 3 19 2.0400 - 2.0036 1.00 2604 139 0.2465 0.2579 REMARK 3 20 2.0036 - 1.9696 1.00 2641 140 0.2534 0.2913 REMARK 3 21 1.9696 - 1.9379 1.00 2601 136 0.2752 0.2824 REMARK 3 22 1.9379 - 1.9081 1.00 2620 135 0.3002 0.2823 REMARK 3 23 1.9081 - 1.8800 1.00 2641 138 0.3292 0.3632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2680 REMARK 3 ANGLE : 1.299 3616 REMARK 3 CHIRALITY : 0.063 371 REMARK 3 PLANARITY : 0.008 453 REMARK 3 DIHEDRAL : 12.074 1552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 153 OR RESID 201 OR REMARK 3 RESID 202) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0733 25.9902 10.0646 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.2429 REMARK 3 T33: 0.2397 T12: 0.0106 REMARK 3 T13: 0.0093 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.7443 L22: 1.0549 REMARK 3 L33: 0.9594 L12: -0.1465 REMARK 3 L13: 0.3404 L23: 0.1507 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0887 S13: -0.0408 REMARK 3 S21: 0.0641 S22: 0.0113 S23: 0.0344 REMARK 3 S31: 0.1424 S32: -0.0685 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 153 OR RESID 201 OR REMARK 3 RESID 202) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1705 52.9099 -6.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.2677 REMARK 3 T33: 0.2717 T12: -0.0255 REMARK 3 T13: 0.0122 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4913 L22: 1.0831 REMARK 3 L33: 0.9732 L12: 0.1843 REMARK 3 L13: -0.0479 L23: 0.4651 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0291 S13: 0.0311 REMARK 3 S21: -0.1994 S22: 0.1038 S23: -0.0852 REMARK 3 S31: -0.1925 S32: 0.1117 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 0 THROUGH 17 OR RESID REMARK 3 19 THROUGH 39 OR RESID 42 THROUGH 44 OR REMARK 3 RESID 46 THROUGH 101 OR RESID 103 THROUGH REMARK 3 111 OR RESID 113 THROUGH 121 OR RESID 123 REMARK 3 THROUGH 127 OR RESID 129 THROUGH 151 OR REMARK 3 RESID 153)) REMARK 3 SELECTION : (CHAIN B AND (RESID 0 THROUGH 17 OR RESID REMARK 3 19 THROUGH 39 OR RESID 42 THROUGH 44 OR REMARK 3 RESID 46 THROUGH 101 OR RESID 103 THROUGH REMARK 3 111 OR RESID 113 THROUGH 121 OR RESID 123 REMARK 3 THROUGH 127 OR RESID 129 THROUGH 151 OR REMARK 3 RESID 153)) REMARK 3 ATOM PAIRS NUMBER : 1738 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : ADJUSTABLE FOCUS K-B PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2MBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM HEPES, PH 7.5, 1 M SODIUM REMARK 280 ACETATE, 0.05 M CADMIUM SULFATE 8/3-HYDRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.50500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.99750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.99750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.25250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.99750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.99750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.75750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.99750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.99750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.25250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.99750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.99750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.75750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.50500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 369 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 399 O HOH B 413 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD1 HIS A 36 CD CD A 204 3555 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 1 -62.73 68.83 REMARK 500 ASP A 20 70.84 -151.26 REMARK 500 ASP A 122 39.95 -141.69 REMARK 500 ASP A 122 52.09 -144.04 REMARK 500 PHE A 123 74.94 -150.30 REMARK 500 PHE A 123 74.94 -160.65 REMARK 500 VAL B 1 -64.40 69.85 REMARK 500 ASP B 122 35.27 -154.53 REMARK 500 PHE B 123 67.50 -151.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS B 12 NE2 86.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 ACT A 213 O 147.6 REMARK 620 3 ACT A 213 OXT 93.5 54.4 REMARK 620 4 ACT A 214 O 88.4 96.6 107.5 REMARK 620 5 HIS B 116 NE2 118.2 93.9 144.8 89.3 REMARK 620 6 HOH B 338 O 85.4 94.7 84.3 167.0 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 36 ND1 REMARK 620 2 GLU A 38 OE2 108.8 REMARK 620 3 ASP A 126 OD1 26.7 115.5 REMARK 620 4 ASP A 126 OD2 24.7 114.4 2.1 REMARK 620 5 ACT A 210 O 26.3 120.4 5.2 5.9 REMARK 620 6 ACT A 210 OXT 30.3 121.0 6.0 7.8 4.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 208 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 HOH A 425 O 85.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 201 NA 92.0 REMARK 620 3 HEM A 201 NB 91.5 89.1 REMARK 620 4 HEM A 201 NC 97.5 170.5 90.4 REMARK 620 5 HEM A 201 ND 97.4 88.5 170.8 90.5 REMARK 620 6 OXY A 202 O1 172.5 83.4 94.3 87.2 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 ACT A 209 O 146.8 REMARK 620 3 ACT A 209 OXT 92.0 55.5 REMARK 620 4 ACT A 211 O 94.4 101.1 106.4 REMARK 620 5 HOH A 357 O 84.8 86.3 86.7 166.8 REMARK 620 6 HIS B 35 NE2 117.4 93.8 149.0 82.3 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 ND1 REMARK 620 2 ASP A 122 OD2 110.2 REMARK 620 3 ACT A 212 O 101.4 82.3 REMARK 620 4 ACT A 212 OXT 88.2 133.4 51.7 REMARK 620 5 HOH A 412 O 86.5 136.7 134.9 84.7 REMARK 620 6 HOH A 428 O 160.2 85.6 92.4 89.3 73.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 122 OD1 REMARK 620 2 ASP A 122 OD2 53.0 REMARK 620 3 HIS B 12 NE2 34.5 36.0 REMARK 620 4 ASP B 122 OD1 38.2 37.9 4.4 REMARK 620 5 ASP B 122 OD2 38.0 34.4 3.7 3.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 36 ND1 REMARK 620 2 GLU B 38 OE2 111.3 REMARK 620 3 ASP B 126 OD1 28.0 118.5 REMARK 620 4 ASP B 126 OD2 25.9 117.2 2.4 REMARK 620 5 ACT B 205 O 105.1 95.2 77.4 79.4 REMARK 620 6 ACT B 205 OXT 86.7 148.7 66.7 68.9 54.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 81 NE2 REMARK 620 2 HOH B 383 O 87.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HEM B 201 NA 91.7 REMARK 620 3 HEM B 201 NB 95.3 90.9 REMARK 620 4 HEM B 201 NC 96.3 172.1 88.2 REMARK 620 5 HEM B 201 ND 93.4 88.7 171.3 90.9 REMARK 620 6 OXY B 202 O1 176.1 84.5 85.3 87.6 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 205 DBREF 6BMG A 1 153 UNP P02184 MYG_KOGSI 2 154 DBREF 6BMG B 1 153 UNP P02184 MYG_KOGSI 2 154 SEQADV 6BMG MET A 0 UNP P02184 INITIATING METHIONINE SEQADV 6BMG MET B 0 UNP P02184 INITIATING METHIONINE SEQRES 1 A 154 MET VAL LEU SER GLU GLY GLU TRP GLN LEU VAL LEU HIS SEQRES 2 A 154 VAL TRP ALA LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY SEQRES 3 A 154 GLN ASP ILE LEU ILE ARG LEU PHE LYS HIS HIS PRO GLU SEQRES 4 A 154 THR LEU GLU LYS PHE ASP ARG PHE LYS HIS LEU LYS SER SEQRES 5 A 154 GLU ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS SEQRES 6 A 154 GLY VAL THR VAL LEU THR ALA LEU GLY ALA ILE LEU LYS SEQRES 7 A 154 LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS PRO LEU ALA SEQRES 8 A 154 GLN SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR SEQRES 9 A 154 LEU GLU PHE ILE SER GLU ALA ILE ILE HIS VAL LEU HIS SEQRES 10 A 154 SER ARG HIS PRO ALA ASP PHE GLY ALA ASP ALA GLN GLY SEQRES 11 A 154 ALA MET SER LYS ALA LEU GLU LEU PHE ARG LYS ASP ILE SEQRES 12 A 154 ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN GLY SEQRES 1 B 154 MET VAL LEU SER GLU GLY GLU TRP GLN LEU VAL LEU HIS SEQRES 2 B 154 VAL TRP ALA LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY SEQRES 3 B 154 GLN ASP ILE LEU ILE ARG LEU PHE LYS HIS HIS PRO GLU SEQRES 4 B 154 THR LEU GLU LYS PHE ASP ARG PHE LYS HIS LEU LYS SER SEQRES 5 B 154 GLU ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS SEQRES 6 B 154 GLY VAL THR VAL LEU THR ALA LEU GLY ALA ILE LEU LYS SEQRES 7 B 154 LYS LYS GLY HIS HIS GLU ALA GLU LEU LYS PRO LEU ALA SEQRES 8 B 154 GLN SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR SEQRES 9 B 154 LEU GLU PHE ILE SER GLU ALA ILE ILE HIS VAL LEU HIS SEQRES 10 B 154 SER ARG HIS PRO ALA ASP PHE GLY ALA ASP ALA GLN GLY SEQRES 11 B 154 ALA MET SER LYS ALA LEU GLU LEU PHE ARG LYS ASP ILE SEQRES 12 B 154 ALA ALA LYS TYR LYS GLU LEU GLY TYR GLN GLY HET HEM A 201 73 HET OXY A 202 2 HET CD A 203 1 HET CD A 204 1 HET CD A 205 2 HET CD A 206 1 HET CD A 207 1 HET CD A 208 1 HET ACT A 209 7 HET ACT A 210 7 HET ACT A 211 7 HET ACT A 212 7 HET ACT A 213 7 HET ACT A 214 7 HET HEM B 201 73 HET OXY B 202 2 HET CD B 203 1 HET CD B 204 1 HET ACT B 205 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETNAM CD CADMIUM ION HETNAM ACT ACETATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 OXY 2(O2) FORMUL 5 CD 8(CD 2+) FORMUL 11 ACT 7(C2 H3 O2 1-) FORMUL 22 HOH *328(H2 O) HELIX 1 AA1 SER A 3 ASP A 20 1 18 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 PRO A 37 LYS A 47 5 11 HELIX 4 AA4 SER A 51 SER A 58 1 8 HELIX 5 AA5 SER A 58 LYS A 78 1 21 HELIX 6 AA6 HIS A 82 LYS A 96 1 15 HELIX 7 AA7 PRO A 100 HIS A 119 1 20 HELIX 8 AA8 PRO A 120 PHE A 123 5 4 HELIX 9 AA9 GLY A 124 LEU A 149 1 26 HELIX 10 AB1 SER B 3 ALA B 19 1 17 HELIX 11 AB2 ASP B 20 HIS B 36 1 17 HELIX 12 AB3 PRO B 37 PHE B 43 5 7 HELIX 13 AB4 SER B 51 SER B 58 1 8 HELIX 14 AB5 SER B 58 LYS B 78 1 21 HELIX 15 AB6 HIS B 82 LYS B 96 1 15 HELIX 16 AB7 PRO B 100 HIS B 119 1 20 HELIX 17 AB8 PRO B 120 PHE B 123 5 4 HELIX 18 AB9 GLY B 124 GLY B 150 1 27 LINK NE2 HIS A 12 CD B CD A 205 1555 1555 2.10 LINK NE2 HIS A 35 CD CD A 203 1555 1555 2.34 LINK ND1 HIS A 36 CD CD A 204 1555 3555 2.45 LINK OE2 GLU A 38 CD CD A 204 1555 3555 2.14 LINK NE2 HIS A 81 CD CD A 208 1555 1555 2.54 LINK NE2 HIS A 93 FE HEM A 201 1555 1555 2.14 LINK NE2 HIS A 116 CD CD A 207 1555 1555 2.35 LINK ND1 HIS A 119 CD CD A 206 1555 1555 2.44 LINK OD1AASP A 122 CD A CD A 205 1555 1555 2.38 LINK OD2AASP A 122 CD A CD A 205 1555 1555 2.46 LINK OD2BASP A 122 CD CD A 206 1555 1555 2.40 LINK OD1 ASP A 126 CD CD A 204 1555 1555 2.45 LINK OD2 ASP A 126 CD CD A 204 1555 1555 2.31 LINK FE HEM A 201 O1 OXY A 202 1555 1555 2.07 LINK CD CD A 203 O ACT A 213 1555 1555 2.40 LINK CD CD A 203 OXT ACT A 213 1555 1555 2.48 LINK CD CD A 203 O ACT A 214 1555 1555 2.21 LINK CD CD A 203 NE2 HIS B 116 1555 1555 2.36 LINK CD CD A 203 O HOH B 338 1555 1555 2.36 LINK CD CD A 204 O ACT A 210 1555 1555 2.61 LINK CD CD A 204 OXT ACT A 210 1555 1555 2.37 LINK CD A CD A 205 NE2 HIS B 12 3555 1555 2.65 LINK CD B CD A 205 NE2 HIS B 12 3555 1555 2.35 LINK CD A CD A 205 OD1 ASP B 122 3555 1555 2.59 LINK CD A CD A 205 OD2 ASP B 122 3555 1555 2.44 LINK CD CD A 206 O ACT A 212 1555 1555 2.56 LINK CD CD A 206 OXT ACT A 212 1555 1555 2.60 LINK CD CD A 206 O HOH A 412 1555 1555 2.18 LINK CD CD A 206 O HOH A 428 1555 1555 2.41 LINK CD CD A 207 O ACT A 209 1555 1555 2.42 LINK CD CD A 207 OXT ACT A 209 1555 1555 2.41 LINK CD CD A 207 O ACT A 211 1555 1555 2.35 LINK CD CD A 207 O HOH A 357 1555 1555 2.45 LINK CD CD A 207 NE2 HIS B 35 1555 1555 2.31 LINK CD CD A 208 O HOH A 425 1555 1555 2.42 LINK ND1 HIS B 36 CD CD B 203 1555 1555 2.36 LINK OE2 GLU B 38 CD CD B 203 1555 1555 2.19 LINK NE2 HIS B 81 CD CD B 204 1555 1555 2.46 LINK NE2 HIS B 93 FE HEM B 201 1555 1555 2.06 LINK OD1 ASP B 126 CD CD B 203 1555 3555 2.47 LINK OD2 ASP B 126 CD CD B 203 1555 3555 2.33 LINK FE HEM B 201 O1 OXY B 202 1555 1555 1.77 LINK CD CD B 203 O ACT B 205 1555 1555 2.32 LINK CD CD B 203 OXT ACT B 205 1555 1555 2.53 LINK CD CD B 204 O HOH B 383 1555 1555 2.56 SITE 1 AC1 19 LYS A 42 PHE A 43 ARG A 45 HIS A 64 SITE 2 AC1 19 THR A 67 VAL A 68 ALA A 71 LEU A 89 SITE 3 AC1 19 SER A 92 HIS A 93 HIS A 97 ILE A 99 SITE 4 AC1 19 TYR A 103 OXY A 202 HOH A 304 HOH A 330 SITE 5 AC1 19 HOH A 341 HOH A 344 LYS B 77 SITE 1 AC2 4 PHE A 43 HIS A 64 VAL A 68 HEM A 201 SITE 1 AC3 5 HIS A 35 ACT A 213 ACT A 214 HIS B 116 SITE 2 AC3 5 HOH B 338 SITE 1 AC4 4 HIS A 36 GLU A 38 ASP A 126 ACT A 210 SITE 1 AC5 7 HIS A 12 LYS A 16 ASP A 122 HIS B 12 SITE 2 AC5 7 LYS B 16 ASP B 122 HOH B 374 SITE 1 AC6 5 HIS A 119 ASP A 122 ACT A 212 HOH A 412 SITE 2 AC6 5 HOH A 428 SITE 1 AC7 5 HIS A 116 ACT A 209 ACT A 211 HOH A 357 SITE 2 AC7 5 HIS B 35 SITE 1 AC8 4 MET A 0 HIS A 81 HOH A 425 HOH A 438 SITE 1 AC9 6 HIS A 116 GLN A 128 CD A 207 ACT A 211 SITE 2 AC9 6 HOH A 384 HIS B 35 SITE 1 AD1 9 HIS A 36 GLU A 38 PHE A 106 ASP A 126 SITE 2 AD1 9 CD A 204 HOH A 307 HOH A 348 HOH A 390 SITE 3 AD1 9 HOH A 413 SITE 1 AD2 6 HIS A 116 CD A 207 ACT A 209 HOH A 308 SITE 2 AD2 6 HOH A 383 HIS B 35 SITE 1 AD3 5 LYS A 16 HIS A 119 ASP A 122 CD A 206 SITE 2 AD3 5 HOH A 328 SITE 1 AD4 6 HIS A 35 CD A 203 ACT A 214 HOH A 334 SITE 2 AD4 6 HIS B 116 GLN B 128 SITE 1 AD5 5 HIS A 35 CD A 203 ACT A 213 HOH A 305 SITE 2 AD5 5 HIS B 116 SITE 1 AD6 18 LYS B 42 PHE B 43 ARG B 45 HIS B 64 SITE 2 AD6 18 VAL B 68 LEU B 89 SER B 92 HIS B 93 SITE 3 AD6 18 HIS B 97 ILE B 99 TYR B 103 LEU B 104 SITE 4 AD6 18 OXY B 202 HOH B 305 HOH B 313 HOH B 357 SITE 5 AD6 18 HOH B 370 HOH B 388 SITE 1 AD7 4 PHE B 43 HIS B 64 VAL B 68 HEM B 201 SITE 1 AD8 4 HIS B 36 GLU B 38 ASP B 126 ACT B 205 SITE 1 AD9 3 MET B 0 HIS B 81 HOH B 383 SITE 1 AE1 8 HIS B 36 GLU B 38 PHE B 106 ASP B 126 SITE 2 AE1 8 CD B 203 HOH B 314 HOH B 352 HOH B 397 CRYST1 85.995 85.995 109.010 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009173 0.00000