HEADER TRANSFERASE 15-NOV-17 6BMN TITLE STRUCTURE OF HUMAN DHHC20 PALMITOYLTRANSFERASE, SPACE GROUP P63 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN DHHC20 PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER DHHC DOMAIN-CONTAINING PROTEIN 20,DHHC-20; COMPND 5 EC: 2.3.1.225; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HUMAN DHHC20 PALMITOYLTRANSFERASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ZINC FINGER DHHC DOMAIN-CONTAINING PROTEIN 20,DHHC-20; COMPND 11 EC: 2.3.1.225; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZDHHC20; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ZDHHC20; SOURCE 13 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS DHHC, LIPID, ACYL, PALMITOYLTRANSFERASE., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.RANA,C.-J.LEE,A.BANERJEE REVDAT 3 28-MAR-18 6BMN 1 JRNL REVDAT 2 21-FEB-18 6BMN 1 JRNL REVDAT 1 24-JAN-18 6BMN 0 JRNL AUTH M.S.RANA,P.KUMAR,C.J.LEE,R.VERARDI,K.R.RAJASHANKAR, JRNL AUTH 2 A.BANERJEE JRNL TITL FATTY ACYL RECOGNITION AND TRANSFER BY AN INTEGRAL JRNL TITL 2 MEMBRANES-ACYLTRANSFERASE. JRNL REF SCIENCE V. 359 2018 JRNL REFN ESSN 1095-9203 JRNL PMID 29326245 JRNL DOI 10.1126/SCIENCE.AAO6326 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 39928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 86.2683 - 5.4229 0.98 2842 160 0.2142 0.2247 REMARK 3 2 5.4229 - 4.3043 0.99 2832 146 0.2210 0.2345 REMARK 3 3 4.3043 - 3.7602 0.99 2838 153 0.2461 0.2666 REMARK 3 4 3.7602 - 3.4164 0.99 2827 142 0.2564 0.3013 REMARK 3 5 3.4164 - 3.1715 0.99 2845 146 0.2850 0.3594 REMARK 3 6 3.1715 - 2.9845 0.99 2853 151 0.3036 0.3324 REMARK 3 7 2.9845 - 2.8351 0.98 2776 150 0.3006 0.3185 REMARK 3 8 2.8351 - 2.7116 0.99 2841 150 0.3021 0.3196 REMARK 3 9 2.7116 - 2.6072 0.99 2824 148 0.3324 0.3477 REMARK 3 10 2.6072 - 2.5173 0.99 2823 143 0.3401 0.3421 REMARK 3 11 2.5173 - 2.4385 0.98 2776 149 0.3735 0.3784 REMARK 3 12 2.4385 - 2.3688 0.94 2682 133 0.3919 0.4226 REMARK 3 13 2.3688 - 2.3065 0.87 2480 135 0.4246 0.4568 REMARK 3 14 2.3065 - 2.2502 0.59 1691 92 0.4554 0.4264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4957 REMARK 3 ANGLE : 0.480 6723 REMARK 3 CHIRALITY : 0.036 724 REMARK 3 PLANARITY : 0.003 811 REMARK 3 DIHEDRAL : 10.551 2778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 7 OR RESID 9 THROUGH REMARK 3 81 OR RESID 83 THROUGH 92 OR RESID 94 OR REMARK 3 (RESID 95 THROUGH 96 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 97 OR (RESID 98 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 99 OR (RESID 100 THROUGH 102 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 103 THROUGH 107 OR REMARK 3 RESID 109 THROUGH 155 OR RESID 157 REMARK 3 THROUGH 206 OR RESID 208 THROUGH 214 OR REMARK 3 RESID 216 THROUGH 218 OR RESID 220 REMARK 3 THROUGH 232 OR RESID 234 THROUGH 245 OR REMARK 3 (RESID 246 THROUGH 247 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 248 THROUGH 267 OR RESID 269 REMARK 3 THROUGH 296)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 7 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 9 THROUGH 10 OR (RESID 11 REMARK 3 THROUGH 12 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 13 REMARK 3 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 THROUGH 81 OR RESID 83 REMARK 3 THROUGH 89 OR (RESID 90 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 91 THROUGH 92 OR RESID 94 REMARK 3 THROUGH 95 OR (RESID 96 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 97 THROUGH 107 OR RESID 109 REMARK 3 THROUGH 155 OR RESID 157 THROUGH 195 OR REMARK 3 (RESID 196 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR (RESID 197 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG )) OR RESID 198 REMARK 3 OR RESID 202 OR (RESID 203 THROUGH 206 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 208 THROUGH 214 REMARK 3 OR RESID 216 THROUGH 218 OR RESID 220 REMARK 3 THROUGH 232 OR RESID 234 THROUGH 267 OR REMARK 3 RESID 269 THROUGH 296)) REMARK 3 ATOM PAIRS NUMBER : 2475 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 86.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 4.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.15 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, PH5.8, 50MM KH2PO4, 27.7% REMARK 280 PEG 300, 25MM DTT, 1.25% 2,5-HEXANEDIOL AFTER 3.5 MONTHS., REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.19300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.19300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.19300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 199 REMARK 465 GLU A 200 REMARK 465 LEU A 201 REMARK 465 VAL A 297 REMARK 465 GLY A 298 REMARK 465 MET A 299 REMARK 465 THR B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 7 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 7 CZ3 CH2 REMARK 470 CYS A 9 SG REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 GLN A 100 OE1 NE2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 196 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 197 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 197 CH2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 THR A 204 OG1 CG2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 9 SG REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 PHE B 98 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 246 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 34.61 -84.28 REMARK 500 ARG A 138 -0.35 69.44 REMARK 500 LYS A 151 52.40 39.59 REMARK 500 PRO A 281 49.58 -71.75 REMARK 500 ARG B 138 -0.24 69.00 REMARK 500 PRO B 281 48.96 -71.98 REMARK 500 LEU B 296 -79.13 -94.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 131 SG 97.1 REMARK 620 3 HIS A 141 ND1 107.7 101.0 REMARK 620 4 CYS A 148 SG 102.4 115.7 128.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 142 SG REMARK 620 2 CYS A 145 SG 115.3 REMARK 620 3 HIS A 155 ND1 101.6 99.2 REMARK 620 4 CYS A 162 SG 110.1 111.3 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 128 SG REMARK 620 2 CYS B 131 SG 111.9 REMARK 620 3 HIS B 141 ND1 103.8 100.7 REMARK 620 4 CYS B 148 SG 104.8 115.4 119.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 142 SG REMARK 620 2 CYS B 145 SG 121.1 REMARK 620 3 HIS B 155 ND1 97.6 103.2 REMARK 620 4 CYS B 162 SG 108.0 112.8 113.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PAP B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 404 DBREF 6BMN A 5 299 UNP Q5W0Z9 ZDH20_HUMAN 5 299 DBREF 6BMN B 6 299 UNP Q5W0Z9 ZDH20_HUMAN 6 299 SEQADV 6BMN THR B 5 UNP Q5W0Z9 EXPRESSION TAG SEQRES 1 A 295 THR LEU TRP ARG CYS CYS GLN ARG VAL VAL GLY TRP VAL SEQRES 2 A 295 PRO VAL LEU PHE ILE THR PHE VAL VAL VAL TRP SER TYR SEQRES 3 A 295 TYR ALA TYR VAL VAL GLU LEU CYS VAL PHE THR ILE PHE SEQRES 4 A 295 GLY ASN GLU GLU ASN GLY LYS THR VAL VAL TYR LEU VAL SEQRES 5 A 295 ALA PHE HIS LEU PHE PHE VAL MET PHE VAL TRP SER TYR SEQRES 6 A 295 TRP MET THR ILE PHE THR SER PRO ALA SER PRO SER LYS SEQRES 7 A 295 GLU PHE TYR LEU SER ASN SER GLU LYS GLU ARG TYR GLU SEQRES 8 A 295 LYS GLU PHE SER GLN GLU ARG GLN GLN GLU ILE LEU ARG SEQRES 9 A 295 ARG ALA ALA ARG ALA LEU PRO ILE TYR THR THR SER ALA SEQRES 10 A 295 SER LYS THR ILE ARG TYR CYS GLU LYS CYS GLN LEU ILE SEQRES 11 A 295 LYS PRO ASP ARG ALA HIS HIS CYS SER ALA CYS ASP SER SEQRES 12 A 295 CYS ILE LEU LYS MET ASP HIS HIS CYS PRO TRP VAL ASN SEQRES 13 A 295 ASN CYS VAL GLY PHE SER ASN TYR LYS PHE PHE LEU LEU SEQRES 14 A 295 PHE LEU LEU TYR SER LEU LEU TYR CYS LEU PHE VAL ALA SEQRES 15 A 295 ALA THR VAL LEU GLU TYR PHE ILE LYS PHE TRP THR ASN SEQRES 16 A 295 GLU LEU THR ASP THR ARG ALA LYS PHE HIS VAL LEU PHE SEQRES 17 A 295 LEU PHE PHE VAL SER ALA MET PHE PHE ILE SER VAL LEU SEQRES 18 A 295 SER LEU PHE SER TYR HIS CYS TRP LEU VAL GLY LYS ASN SEQRES 19 A 295 ARG THR THR ILE GLU SER PHE ARG ALA PRO THR PHE SER SEQRES 20 A 295 TYR GLY PRO ASP GLY ASN GLY PHE SER LEU GLY CYS SER SEQRES 21 A 295 LYS ASN TRP ARG GLN VAL PHE GLY ASP GLU LYS LYS TYR SEQRES 22 A 295 TRP LEU LEU PRO ILE PHE SER SER LEU GLY ASP GLY CYS SEQRES 23 A 295 SER PHE PRO THR ARG LEU VAL GLY MET SEQRES 1 B 295 THR LEU TRP ARG CYS CYS GLN ARG VAL VAL GLY TRP VAL SEQRES 2 B 295 PRO VAL LEU PHE ILE THR PHE VAL VAL VAL TRP SER TYR SEQRES 3 B 295 TYR ALA TYR VAL VAL GLU LEU CYS VAL PHE THR ILE PHE SEQRES 4 B 295 GLY ASN GLU GLU ASN GLY LYS THR VAL VAL TYR LEU VAL SEQRES 5 B 295 ALA PHE HIS LEU PHE PHE VAL MET PHE VAL TRP SER TYR SEQRES 6 B 295 TRP MET THR ILE PHE THR SER PRO ALA SER PRO SER LYS SEQRES 7 B 295 GLU PHE TYR LEU SER ASN SER GLU LYS GLU ARG TYR GLU SEQRES 8 B 295 LYS GLU PHE SER GLN GLU ARG GLN GLN GLU ILE LEU ARG SEQRES 9 B 295 ARG ALA ALA ARG ALA LEU PRO ILE TYR THR THR SER ALA SEQRES 10 B 295 SER LYS THR ILE ARG TYR CYS GLU LYS CYS GLN LEU ILE SEQRES 11 B 295 LYS PRO ASP ARG ALA HIS HIS CYS SER ALA CYS ASP SER SEQRES 12 B 295 CYS ILE LEU LYS MET ASP HIS HIS CME PRO TRP VAL ASN SEQRES 13 B 295 ASN CYS VAL GLY PHE SER ASN TYR LYS PHE PHE LEU LEU SEQRES 14 B 295 PHE LEU LEU TYR SER LEU LEU TYR CYS LEU PHE VAL ALA SEQRES 15 B 295 ALA THR VAL LEU GLU TYR PHE ILE LYS PHE TRP THR ASN SEQRES 16 B 295 GLU LEU THR ASP THR ARG ALA LYS PHE HIS VAL LEU PHE SEQRES 17 B 295 LEU PHE PHE VAL SER ALA MET PHE PHE ILE SER VAL LEU SEQRES 18 B 295 SER LEU PHE SER TYR HIS CYS TRP LEU VAL GLY LYS ASN SEQRES 19 B 295 ARG THR THR ILE GLU SER PHE ARG ALA PRO THR PHE SER SEQRES 20 B 295 TYR GLY PRO ASP GLY ASN GLY PHE SER LEU GLY CYS SER SEQRES 21 B 295 LYS ASN TRP ARG GLN VAL PHE GLY ASP GLU LYS LYS TYR SEQRES 22 B 295 TRP LEU LEU PRO ILE PHE SER SER LEU GLY ASP GLY CYS SEQRES 23 B 295 SER PHE PRO THR ARG LEU VAL GLY MET MODRES 6BMN CME B 156 CYS MODIFIED RESIDUE HET CME B 156 10 HET ZN A 401 1 HET ZN A 402 1 HET PO4 A 403 5 HET PO4 A 404 5 HET ZN B 401 1 HET ZN B 402 1 HET PAP B 403 31 HET PO4 B 404 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM PAP 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PO4 3(O4 P 3-) FORMUL 9 PAP C10 H16 N5 O13 P3 FORMUL 11 HOH *25(H2 O) HELIX 1 AA1 LEU A 6 GLY A 15 1 10 HELIX 2 AA2 TRP A 16 VAL A 35 1 20 HELIX 3 AA3 GLU A 47 THR A 75 1 29 HELIX 4 AA4 SER A 81 TYR A 85 5 5 HELIX 5 AA5 SER A 89 GLU A 97 1 9 HELIX 6 AA6 SER A 99 ARG A 112 1 14 HELIX 7 AA7 PRO A 157 ASN A 160 5 4 HELIX 8 AA8 ASN A 167 THR A 198 1 32 HELIX 9 AA9 ASP A 203 ASN A 238 1 36 HELIX 10 AB1 THR A 240 ARG A 246 1 7 HELIX 11 AB2 GLY A 262 GLY A 272 1 11 HELIX 12 AB3 GLU A 274 TRP A 278 5 5 HELIX 13 AB4 TRP B 7 GLY B 15 1 9 HELIX 14 AB5 TRP B 16 VAL B 35 1 20 HELIX 15 AB6 ILE B 42 GLU B 46 5 5 HELIX 16 AB7 GLU B 47 THR B 75 1 29 HELIX 17 AB8 SER B 81 TYR B 85 5 5 HELIX 18 AB9 SER B 89 GLU B 97 1 9 HELIX 19 AC1 SER B 99 ARG B 112 1 14 HELIX 20 AC2 PRO B 157 ASN B 160 5 4 HELIX 21 AC3 ASN B 167 THR B 198 1 32 HELIX 22 AC4 ASP B 203 ASN B 238 1 36 HELIX 23 AC5 THR B 240 ARG B 246 1 7 HELIX 24 AC6 GLY B 262 GLY B 272 1 11 HELIX 25 AC7 GLU B 274 TRP B 278 5 5 SHEET 1 AA1 3 THR A 118 THR A 119 0 SHEET 2 AA1 3 THR A 249 PHE A 250 -1 O THR A 249 N THR A 119 SHEET 3 AA1 3 GLY A 253 PRO A 254 -1 O GLY A 253 N PHE A 250 SHEET 1 AA2 2 TYR A 127 CYS A 128 0 SHEET 2 AA2 2 LEU A 133 ILE A 134 -1 O LEU A 133 N CYS A 128 SHEET 1 AA3 2 HIS A 140 CYS A 142 0 SHEET 2 AA3 2 SER A 147 ILE A 149 -1 O ILE A 149 N HIS A 140 SHEET 1 AA4 2 HIS A 154 CYS A 156 0 SHEET 2 AA4 2 ASN A 161 VAL A 163 -1 O VAL A 163 N HIS A 154 SHEET 1 AA5 3 THR B 118 THR B 119 0 SHEET 2 AA5 3 THR B 249 PHE B 250 -1 O THR B 249 N THR B 119 SHEET 3 AA5 3 GLY B 253 PRO B 254 -1 O GLY B 253 N PHE B 250 SHEET 1 AA6 2 TYR B 127 CYS B 128 0 SHEET 2 AA6 2 LEU B 133 ILE B 134 -1 O LEU B 133 N CYS B 128 SHEET 1 AA7 2 HIS B 140 CYS B 142 0 SHEET 2 AA7 2 SER B 147 ILE B 149 -1 O ILE B 149 N HIS B 140 SHEET 1 AA8 2 HIS B 154 CME B 156 0 SHEET 2 AA8 2 ASN B 161 VAL B 163 -1 O VAL B 163 N HIS B 154 LINK SG CYS A 128 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 131 ZN ZN A 402 1555 1555 2.29 LINK ND1 HIS A 141 ZN ZN A 402 1555 1555 2.04 LINK SG CYS A 142 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 145 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 148 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 155 ZN ZN A 401 1555 1555 2.03 LINK SG CYS A 162 ZN ZN A 401 1555 1555 2.33 LINK SG CYS B 128 ZN ZN B 401 1555 1555 2.30 LINK SG CYS B 131 ZN ZN B 401 1555 1555 2.29 LINK ND1 HIS B 141 ZN ZN B 401 1555 1555 2.04 LINK SG CYS B 142 ZN ZN B 402 1555 1555 2.34 LINK SG CYS B 145 ZN ZN B 402 1555 1555 2.25 LINK SG CYS B 148 ZN ZN B 401 1555 1555 2.24 LINK C HIS B 155 N CME B 156 1555 1555 1.33 LINK ND1 HIS B 155 ZN ZN B 402 1555 1555 2.04 LINK C CME B 156 N PRO B 157 1555 1555 1.34 LINK SG CYS B 162 ZN ZN B 402 1555 1555 2.28 SITE 1 AC1 4 CYS A 142 CYS A 145 HIS A 155 CYS A 162 SITE 1 AC2 4 CYS A 128 CYS A 131 HIS A 141 CYS A 148 SITE 1 AC3 4 LYS A 135 HIS A 140 HIS A 141 PO4 A 404 SITE 1 AC4 3 ARG A 126 HIS A 140 PO4 A 403 SITE 1 AC5 4 CYS B 128 CYS B 131 HIS B 141 CYS B 148 SITE 1 AC6 4 CYS B 142 CYS B 145 HIS B 155 CYS B 162 SITE 1 AC7 6 LYS B 135 HIS B 140 HIS B 141 SER B 143 SITE 2 AC7 6 ARG B 239 PO4 B 404 SITE 1 AC8 4 SER B 120 ARG B 126 PAP B 403 HOH B 514 CRYST1 99.541 99.541 158.386 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010046 0.005800 0.000000 0.00000 SCALE2 0.000000 0.011600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006314 0.00000