HEADER MEMBRANE PROTEIN 15-NOV-17 6BMS TITLE PALMITOYLTRANSFERASE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A, D; COMPND 4 EC: 2.3.1.225; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ZDHHC15B; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PICZA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PICZA-ZFDHHS15 KEYWDS MEMBRANE BOUND ENZYME, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,K.RAJASHANKAR REVDAT 6 13-MAR-24 6BMS 1 REMARK REVDAT 5 11-DEC-19 6BMS 1 REMARK REVDAT 4 28-MAR-18 6BMS 1 JRNL REVDAT 3 28-FEB-18 6BMS 1 JRNL REVDAT 2 24-JAN-18 6BMS 1 JRNL REVDAT 1 10-JAN-18 6BMS 0 JRNL AUTH M.S.RANA,P.KUMAR,C.J.LEE,R.VERARDI,K.R.RAJASHANKAR, JRNL AUTH 2 A.BANERJEE JRNL TITL FATTY ACYL RECOGNITION AND TRANSFER BY AN INTEGRAL JRNL TITL 2 MEMBRANES-ACYLTRANSFERASE. JRNL REF SCIENCE V. 359 2018 JRNL REFN ESSN 1095-9203 JRNL PMID 29326245 JRNL DOI 10.1126/SCIENCE.AAO6326 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 58857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2170 - 6.7226 0.98 2865 149 0.2486 0.3102 REMARK 3 2 6.7226 - 5.3410 1.00 2775 126 0.2474 0.2250 REMARK 3 3 5.3410 - 4.6673 1.00 2735 160 0.2068 0.2167 REMARK 3 4 4.6673 - 4.2412 1.00 2713 136 0.2047 0.2316 REMARK 3 5 4.2412 - 3.9376 1.00 2695 150 0.2067 0.2532 REMARK 3 6 3.9376 - 3.7057 1.00 2695 143 0.2168 0.2598 REMARK 3 7 3.7057 - 3.5202 1.00 2687 135 0.2146 0.2398 REMARK 3 8 3.5202 - 3.3671 1.00 2671 152 0.2302 0.2453 REMARK 3 9 3.3671 - 3.2376 1.00 2661 151 0.2364 0.2603 REMARK 3 10 3.2376 - 3.1259 1.00 2656 150 0.2399 0.2861 REMARK 3 11 3.1259 - 3.0282 1.00 2636 166 0.2269 0.2537 REMARK 3 12 3.0282 - 2.9417 1.00 2701 124 0.2219 0.2521 REMARK 3 13 2.9417 - 2.8643 1.00 2643 146 0.2409 0.2652 REMARK 3 14 2.8643 - 2.7944 1.00 2669 130 0.2518 0.2898 REMARK 3 15 2.7944 - 2.7309 1.00 2625 139 0.2504 0.2885 REMARK 3 16 2.7309 - 2.6728 1.00 2659 158 0.2694 0.2896 REMARK 3 17 2.6728 - 2.6193 1.00 2638 148 0.2756 0.3083 REMARK 3 18 2.6193 - 2.5699 1.00 2633 146 0.2863 0.2832 REMARK 3 19 2.5699 - 2.5240 1.00 2635 138 0.2982 0.3264 REMARK 3 20 2.5240 - 2.4813 0.98 2646 121 0.3059 0.3003 REMARK 3 21 2.4813 - 2.4413 0.85 2245 106 0.3122 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4964 REMARK 3 ANGLE : 0.598 6721 REMARK 3 CHIRALITY : 0.039 739 REMARK 3 PLANARITY : 0.004 795 REMARK 3 DIHEDRAL : 5.678 2793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -47.0637 -1.4883 -24.8900 REMARK 3 T TENSOR REMARK 3 T11: 0.7399 T22: 0.3516 REMARK 3 T33: 0.5102 T12: -0.0036 REMARK 3 T13: -0.0663 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: -0.1403 L22: 3.7147 REMARK 3 L33: -0.1681 L12: 0.6190 REMARK 3 L13: 0.0000 L23: 0.5130 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.0146 S13: -0.0135 REMARK 3 S21: 0.3436 S22: -0.0859 S23: -0.0157 REMARK 3 S31: -0.0249 S32: -0.0161 S33: 0.0231 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 97 REMARK 200 PH : 5.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 1.17600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DIAMOND LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE PH-5.5 100MM REMARK 280 SODIUM POTASSIUM TARTRATE 20% PEG400, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 93.20100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 93.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.08850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 93.20100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 93.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.08850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 93.20100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.20100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.08850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 93.20100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.20100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.08850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -12 REMARK 465 PRO A -11 REMARK 465 SER A -10 REMARK 465 ARG A -9 REMARK 465 ALA A -8 REMARK 465 THR A -7 REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 LEU A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 ALA A -1 REMARK 465 LEU A 0 REMARK 465 LEU A 35 REMARK 465 SER A 36 REMARK 465 GLU A 84A REMARK 465 MET A 84B REMARK 465 GLU A 84C REMARK 465 GLU A 84D REMARK 465 PRO A 189 REMARK 465 ASN A 190 REMARK 465 GLY A 191 REMARK 465 PRO A 192 REMARK 465 ASN A 289 REMARK 465 PRO A 290 REMARK 465 LEU A 291 REMARK 465 LEU A 292 REMARK 465 ALA A 293 REMARK 465 ASN A 294 REMARK 465 GLU A 295 REMARK 465 GLU A 296 REMARK 465 LYS A 297 REMARK 465 TRP A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 ASP A 301 REMARK 465 GLY A 302 REMARK 465 GLY A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 SER A 308 REMARK 465 ALA A 309 REMARK 465 ASP A 310 REMARK 465 GLU A 311 REMARK 465 ASN A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 ILE A 318 REMARK 465 ARG A 319 REMARK 465 THR A 320 REMARK 465 GLU A 321 REMARK 465 SER A 322 REMARK 465 SER A 323 REMARK 465 ASN A 324 REMARK 465 SER A 325 REMARK 465 GLY D -11 REMARK 465 PRO D -10 REMARK 465 SER D -9 REMARK 465 ARG D -8 REMARK 465 ALA D -7 REMARK 465 THR D -6 REMARK 465 MET D -5 REMARK 465 ALA D -4 REMARK 465 LEU D -3 REMARK 465 SER D -2 REMARK 465 ARG D -1 REMARK 465 ALA D 0 REMARK 465 LEU D 1 REMARK 465 ARG D 2 REMARK 465 LEU D 36 REMARK 465 SER D 37 REMARK 465 LEU D 192 REMARK 465 PRO D 193 REMARK 465 ASN D 194 REMARK 465 GLY D 195 REMARK 465 PRO D 196 REMARK 465 GLU D 292 REMARK 465 ASN D 293 REMARK 465 PRO D 294 REMARK 465 LEU D 295 REMARK 465 LEU D 296 REMARK 465 ALA D 297 REMARK 465 ASN D 298 REMARK 465 GLU D 299 REMARK 465 GLU D 300 REMARK 465 LYS D 301 REMARK 465 TRP D 302 REMARK 465 VAL D 303 REMARK 465 GLU D 304 REMARK 465 ASP D 305 REMARK 465 GLY D 306 REMARK 465 GLY D 307 REMARK 465 SER D 308 REMARK 465 ASP D 309 REMARK 465 GLU D 310 REMARK 465 GLU D 311 REMARK 465 SER D 312 REMARK 465 ALA D 313 REMARK 465 ASP D 314 REMARK 465 GLU D 315 REMARK 465 ASN D 316 REMARK 465 GLY D 317 REMARK 465 SER D 318 REMARK 465 SER D 319 REMARK 465 LEU D 320 REMARK 465 LEU D 321 REMARK 465 ILE D 322 REMARK 465 ARG D 323 REMARK 465 THR D 324 REMARK 465 GLU D 325 REMARK 465 SER D 326 REMARK 465 SER D 327 REMARK 465 ASN D 328 REMARK 465 SER D 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 1 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 32 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 33 CG1 CG2 REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 LEU A 39 CG CD1 CD2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 TYR A 84 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 VAL A 185 CG1 CG2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 CYS D 3 SG REMARK 470 CYS D 4 SG REMARK 470 ARG D 6 CZ NH1 NH2 REMARK 470 PHE D 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL D 34 CG1 CG2 REMARK 470 THR D 35 OG1 CG2 REMARK 470 ASN D 38 CG OD1 ND2 REMARK 470 ASN D 39 CG OD1 ND2 REMARK 470 LEU D 40 CG CD1 CD2 REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 ARG D 42 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 187 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL D 189 CG1 CG2 REMARK 470 GLU D 264 CG CD OE1 OE2 REMARK 470 LYS D 266 CG CD CE NZ REMARK 470 LYS D 267 CG CD CE NZ REMARK 470 ARG D 289 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 290 CG CD OE1 OE2 REMARK 470 SER D 291 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 28 -82.21 -76.22 REMARK 500 SER A 77 50.93 -95.52 REMARK 500 ARG A 125 -1.28 69.38 REMARK 500 LYS A 138 56.04 30.70 REMARK 500 LYS D 142 50.74 38.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LMT A 1003 REMARK 610 LMT A 1004 REMARK 610 LMT A 1005 REMARK 610 LMT D 1003 REMARK 610 LMT D 1007 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 115 SG REMARK 620 2 CYS A 118 SG 109.9 REMARK 620 3 HIS A 128 ND1 112.1 106.6 REMARK 620 4 CYS A 135 SG 102.4 110.2 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 129 SG REMARK 620 2 CYS A 132 SG 112.9 REMARK 620 3 HIS A 142 ND1 110.9 105.6 REMARK 620 4 CYS A 149 SG 106.6 103.3 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 119 SG REMARK 620 2 CYS D 122 SG 110.5 REMARK 620 3 HIS D 132 ND1 91.1 103.9 REMARK 620 4 CYS D 139 SG 104.0 117.1 126.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 133 SG REMARK 620 2 CYS D 136 SG 115.4 REMARK 620 3 CYS D 153 SG 101.4 114.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POV A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT D 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT D 1007 DBREF 6BMS A -6 322 UNP F1QXD3 F1QXD3_DANRE 1 332 DBREF 6BMS D -5 326 UNP F1QXD3 F1QXD3_DANRE 1 332 SEQADV 6BMS GLY A -12 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS PRO A -11 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER A -10 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ARG A -9 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ALA A -8 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS THR A -7 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER A 143 UNP F1QXD3 CYS 153 ENGINEERED MUTATION SEQADV 6BMS SER A 323 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ASN A 324 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER A 325 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS GLY D -11 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS PRO D -10 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER D -9 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ARG D -8 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ALA D -7 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS THR D -6 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER D 147 UNP F1QXD3 CYS 153 ENGINEERED MUTATION SEQADV 6BMS SER D 327 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS ASN D 328 UNP F1QXD3 EXPRESSION TAG SEQADV 6BMS SER D 329 UNP F1QXD3 EXPRESSION TAG SEQRES 1 A 341 GLY PRO SER ARG ALA THR MET ALA LEU SER ARG ALA LEU SEQRES 2 A 341 ARG CYS CYS GLN ARG ILE PHE SER TRP ILE PRO VAL ILE SEQRES 3 A 341 ILE ILE SER SER VAL VAL LEU TRP SER TYR TYR ALA TYR SEQRES 4 A 341 VAL PHE GLU LEU CYS PHE VAL THR LEU SER ASN ASN LEU SEQRES 5 A 341 GLU ARG VAL THR TYR LEU LEU ILE PHE HIS VAL CYS PHE SEQRES 6 A 341 ILE MET PHE CYS TRP THR TYR TRP LYS ALA ILE PHE THR SEQRES 7 A 341 PRO PRO SER THR PRO THR LYS LYS PHE HIS LEU SER TYR SEQRES 8 A 341 THR ASP LYS GLU ARG TYR GLU MET GLU GLU ARG PRO GLU SEQRES 9 A 341 VAL GLN LYS GLN ILE LEU VAL ASP ILE ALA LYS LYS LEU SEQRES 10 A 341 PRO ILE PHE THR ARG ALA GLN SER GLY ALA ILE ARG PHE SEQRES 11 A 341 CYS ASP ARG CYS GLN VAL ILE LYS PRO ASP ARG CYS HIS SEQRES 12 A 341 HIS CYS SER VAL CYS GLU THR CYS VAL LEU LYS MET ASP SEQRES 13 A 341 HIS HIS SER PRO TRP VAL ASN ASN CYS VAL GLY PHE SER SEQRES 14 A 341 ASN TYR LYS PHE PHE LEU LEU PHE LEU SER TYR SER MET SEQRES 15 A 341 ILE TYR CYS VAL PHE ILE ALA SER THR VAL PHE GLN TYR SEQRES 16 A 341 PHE LEU LYS PHE TRP VAL GLY ASP LEU PRO ASN GLY PRO SEQRES 17 A 341 ALA LYS PHE HIS VAL LEU PHE LEU LEU PHE VAL ALA LEU SEQRES 18 A 341 MET PHE PHE VAL SER LEU MET PHE LEU PHE GLY TYR HIS SEQRES 19 A 341 CYS TRP LEU VAL ALA LYS ASN ARG SER THR LEU GLU ALA SEQRES 20 A 341 PHE SER PRO PRO VAL PHE GLN ASN GLY PRO ASP ARG ASN SEQRES 21 A 341 GLY PHE ASN VAL GLY LEU SER LYS ASN LEU ARG GLN VAL SEQRES 22 A 341 PHE GLY GLU HIS LYS LYS LEU TRP PHE ILE PRO VAL PHE SEQRES 23 A 341 THR SER GLN GLY ASP GLY HIS TYR PHE PRO LEU ARG THR SEQRES 24 A 341 LEU ARG GLU SER GLU ASN PRO LEU LEU ALA ASN GLU GLU SEQRES 25 A 341 LYS TRP VAL GLU ASP GLY GLY SER ASP GLU GLU SER ALA SEQRES 26 A 341 ASP GLU ASN GLY SER SER LEU LEU ILE ARG THR GLU SER SEQRES 27 A 341 SER ASN SER SEQRES 1 D 341 GLY PRO SER ARG ALA THR MET ALA LEU SER ARG ALA LEU SEQRES 2 D 341 ARG CYS CYS GLN ARG ILE PHE SER TRP ILE PRO VAL ILE SEQRES 3 D 341 ILE ILE SER SER VAL VAL LEU TRP SER TYR TYR ALA TYR SEQRES 4 D 341 VAL PHE GLU LEU CYS PHE VAL THR LEU SER ASN ASN LEU SEQRES 5 D 341 GLU ARG VAL THR TYR LEU LEU ILE PHE HIS VAL CYS PHE SEQRES 6 D 341 ILE MET PHE CYS TRP THR TYR TRP LYS ALA ILE PHE THR SEQRES 7 D 341 PRO PRO SER THR PRO THR LYS LYS PHE HIS LEU SER TYR SEQRES 8 D 341 THR ASP LYS GLU ARG TYR GLU MET GLU GLU ARG PRO GLU SEQRES 9 D 341 VAL GLN LYS GLN ILE LEU VAL ASP ILE ALA LYS LYS LEU SEQRES 10 D 341 PRO ILE PHE THR ARG ALA GLN SER GLY ALA ILE ARG PHE SEQRES 11 D 341 CYS ASP ARG CYS GLN VAL ILE LYS PRO ASP ARG CYS HIS SEQRES 12 D 341 HIS CYS SER VAL CYS GLU THR CYS VAL LEU LYS MET ASP SEQRES 13 D 341 HIS HIS SER PRO TRP VAL ASN ASN CYS VAL GLY PHE SER SEQRES 14 D 341 ASN TYR LYS PHE PHE LEU LEU PHE LEU SER TYR SER MET SEQRES 15 D 341 ILE TYR CYS VAL PHE ILE ALA SER THR VAL PHE GLN TYR SEQRES 16 D 341 PHE LEU LYS PHE TRP VAL GLY ASP LEU PRO ASN GLY PRO SEQRES 17 D 341 ALA LYS PHE HIS VAL LEU PHE LEU LEU PHE VAL ALA LEU SEQRES 18 D 341 MET PHE PHE VAL SER LEU MET PHE LEU PHE GLY TYR HIS SEQRES 19 D 341 CYS TRP LEU VAL ALA LYS ASN ARG SER THR LEU GLU ALA SEQRES 20 D 341 PHE SER PRO PRO VAL PHE GLN ASN GLY PRO ASP ARG ASN SEQRES 21 D 341 GLY PHE ASN VAL GLY LEU SER LYS ASN LEU ARG GLN VAL SEQRES 22 D 341 PHE GLY GLU HIS LYS LYS LEU TRP PHE ILE PRO VAL PHE SEQRES 23 D 341 THR SER GLN GLY ASP GLY HIS TYR PHE PRO LEU ARG THR SEQRES 24 D 341 LEU ARG GLU SER GLU ASN PRO LEU LEU ALA ASN GLU GLU SEQRES 25 D 341 LYS TRP VAL GLU ASP GLY GLY SER ASP GLU GLU SER ALA SEQRES 26 D 341 ASP GLU ASN GLY SER SER LEU LEU ILE ARG THR GLU SER SEQRES 27 D 341 SER ASN SER HET ZN A1001 1 HET ZN A1002 1 HET LMT A1003 31 HET LMT A1004 28 HET LMT A1005 26 HET PLM A1006 18 HET POV A1007 52 HET PO4 A1008 5 HET ZN D1001 1 HET ZN D1002 1 HET LMT D1003 29 HET PLM D1004 18 HET PO4 D1005 5 HET PO4 D1006 5 HET LMT D1007 10 HETNAM ZN ZINC ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM PLM PALMITIC ACID HETNAM POV (2S)-3-(HEXADECANOYLOXY)-2-[(9Z)-OCTADEC-9- HETNAM 2 POV ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN POV POPC FORMUL 3 ZN 4(ZN 2+) FORMUL 5 LMT 5(C24 H46 O11) FORMUL 8 PLM 2(C16 H32 O2) FORMUL 9 POV C42 H82 N O8 P FORMUL 10 PO4 3(O4 P 3-) FORMUL 18 HOH *48(H2 O) HELIX 1 AA1 ARG A 1 SER A 8 1 8 HELIX 2 AA2 TRP A 9 PHE A 28 1 20 HELIX 3 AA3 PHE A 28 THR A 34 1 7 HELIX 4 AA4 ASN A 38 THR A 65 1 28 HELIX 5 AA5 THR A 71 HIS A 75 5 5 HELIX 6 AA6 PRO A 87 LYS A 99 1 13 HELIX 7 AA7 ASN A 154 VAL A 185 1 32 HELIX 8 AA8 HIS A 196 LYS A 224 1 29 HELIX 9 AA9 SER A 227 SER A 233 1 7 HELIX 10 AB1 GLY A 249 GLY A 259 1 11 HELIX 11 AB2 HIS A 261 TRP A 265 5 5 HELIX 12 AB3 LEU A 281 ARG A 285 5 5 HELIX 13 AB4 CYS D 4 SER D 9 1 6 HELIX 14 AB5 TRP D 10 GLU D 30 1 21 HELIX 15 AB6 ASN D 39 THR D 66 1 28 HELIX 16 AB7 THR D 72 HIS D 76 5 5 HELIX 17 AB8 SER D 78 GLU D 88 1 11 HELIX 18 AB9 ARG D 90 LYS D 103 1 14 HELIX 19 AC1 ASN D 158 GLY D 190 1 33 HELIX 20 AC2 HIS D 200 ASN D 229 1 30 HELIX 21 AC3 SER D 231 SER D 237 1 7 HELIX 22 AC4 GLY D 253 GLY D 263 1 11 HELIX 23 AC5 HIS D 265 TRP D 269 5 5 HELIX 24 AC6 LEU D 285 ARG D 289 5 5 SHEET 1 AA1 2 PHE A 114 CYS A 115 0 SHEET 2 AA1 2 VAL A 120 ILE A 121 -1 O VAL A 120 N CYS A 115 SHEET 1 AA2 2 HIS A 127 CYS A 129 0 SHEET 2 AA2 2 THR A 134 VAL A 136 -1 O VAL A 136 N HIS A 127 SHEET 1 AA3 2 HIS A 141 SER A 143 0 SHEET 2 AA3 2 ASN A 148 VAL A 150 -1 O ASN A 148 N SER A 143 SHEET 1 AA4 2 VAL A 236 PHE A 237 0 SHEET 2 AA4 2 GLY A 240 PRO A 241 -1 O GLY A 240 N PHE A 237 SHEET 1 AA5 2 PHE D 118 CYS D 119 0 SHEET 2 AA5 2 VAL D 124 ILE D 125 -1 O VAL D 124 N CYS D 119 SHEET 1 AA6 2 HIS D 131 CYS D 133 0 SHEET 2 AA6 2 THR D 138 VAL D 140 -1 O THR D 138 N CYS D 133 SHEET 1 AA7 2 HIS D 145 SER D 147 0 SHEET 2 AA7 2 ASN D 152 VAL D 154 -1 O VAL D 154 N HIS D 145 SHEET 1 AA8 2 VAL D 240 PHE D 241 0 SHEET 2 AA8 2 GLY D 244 PRO D 245 -1 O GLY D 244 N PHE D 241 LINK SG CYS A 115 ZN ZN A1001 1555 1555 2.38 LINK SG CYS A 118 ZN ZN A1001 1555 1555 2.51 LINK ND1 HIS A 128 ZN ZN A1001 1555 1555 2.24 LINK SG CYS A 129 ZN ZN A1002 1555 1555 2.27 LINK SG CYS A 132 ZN ZN A1002 1555 1555 2.34 LINK SG CYS A 135 ZN ZN A1001 1555 1555 2.41 LINK ND1 HIS A 142 ZN ZN A1002 1555 1555 2.19 LINK SG CYS A 149 ZN ZN A1002 1555 1555 2.06 LINK SG CYS D 119 ZN ZN D1001 1555 1555 2.36 LINK SG CYS D 122 ZN ZN D1001 1555 1555 2.39 LINK ND1 HIS D 132 ZN ZN D1001 1555 1555 2.11 LINK SG CYS D 133 ZN ZN D1002 1555 1555 2.35 LINK SG CYS D 136 ZN ZN D1002 1555 1555 2.37 LINK SG CYS D 139 ZN ZN D1001 1555 1555 2.46 LINK SG CYS D 153 ZN ZN D1002 1555 1555 2.43 SITE 1 AC1 4 CYS A 115 CYS A 118 HIS A 128 CYS A 135 SITE 1 AC2 4 CYS A 129 CYS A 132 HIS A 142 CYS A 149 SITE 1 AC3 7 THR A 228 LEU A 229 PHE A 232 HOH A1115 SITE 2 AC3 7 ALA D 197 HIS D 200 LMT D1003 SITE 1 AC4 3 PHE A 195 HIS A 196 THR D 232 SITE 1 AC5 6 HIS A 196 HIS D 145 HIS D 146 TRP D 149 SITE 2 AC5 6 SER D 167 PLM D1004 SITE 1 AC6 12 VAL A 18 PHE A 55 HIS A 141 SER A 143 SITE 2 AC6 12 TRP A 145 PHE A 158 PHE A 161 VAL A 203 SITE 3 AC6 12 PHE A 207 LEU A 214 HOH A1108 LMT D1003 SITE 1 AC7 8 GLY A 216 TYR A 217 CYS A 219 ALA A 223 SITE 2 AC7 8 ALA A 231 ARG A 243 GLU D 89 ARG D 90 SITE 1 AC8 1 ARG A 113 SITE 1 AC9 4 CYS D 119 CYS D 122 HIS D 132 CYS D 139 SITE 1 AD1 4 CYS D 133 CYS D 136 HIS D 146 CYS D 153 SITE 1 AD2 6 HIS A 142 TRP A 145 LMT A1003 PLM A1006 SITE 2 AD2 6 GLU D 30 HIS D 200 SITE 1 AD3 14 LMT A1005 VAL D 19 PHE D 56 HIS D 145 SITE 2 AD3 14 SER D 147 TRP D 149 PHE D 162 PHE D 165 SITE 3 AD3 14 CYS D 173 ILE D 176 LEU D 204 VAL D 207 SITE 4 AD3 14 ALA D 208 LEU D 218 SITE 1 AD4 4 LYS D 126 HIS D 131 HIS D 132 PO4 D1006 SITE 1 AD5 3 ARG D 117 HIS D 131 PO4 D1005 SITE 1 AD6 1 PHE D 236 CRYST1 186.402 186.402 90.177 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011089 0.00000