data_6BNA # _entry.id 6BNA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BNA pdb_00006bna 10.2210/pdb6bna/pdb RCSB GDLB05 ? ? WWPDB D_1000179799 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1984-10-29 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 6BNA _pdbx_database_status.recvd_initial_deposition_date 1984-08-30 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kopka, M.L.' 1 'Yoon, C.' 2 'Goodsell, D.' 3 'Pjura, P.' 4 'Dickerson, R.E.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.' J.Mol.Biol. 183 553 563 1985 JMOBAK UK 0022-2836 0070 ? 2991536 '10.1016/0022-2836(85)90171-8' 1 'The Binding of Netropsin to Double-Helical B-DNA of Sequence C-G-C-G-A-A-T-T-BrC-G-C-G. Single Crystal X-Ray Structure Analysis' 'Structure and Motion. Membranes, Nucleic Acids and Protein.' ? ? ? ? ? ? ? ? 'Adenine Press,Guilderland,New York' ? ? 2 'The Molecular Origin of DNA-Drug Specificity in Netropsin and Distamycin' Proc.Natl.Acad.Sci.USA 82 1376 1380 1985 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kopka, M.L.' 1 ? primary 'Yoon, C.' 2 ? primary 'Goodsell, D.' 3 ? primary 'Pjura, P.' 4 ? primary 'Dickerson, R.E.' 5 ? 1 'Kopka, M.L.' 6 ? 1 'Pjura, P.' 7 ? 1 'Yoon, C.' 8 ? 1 'Goodsell, D.' 9 ? 1 'Dickerson, R.E.' 10 ? 2 'Kopka, M.L.' 11 ? 2 'Yoon, C.' 12 ? 2 'Goodsell, D.' 13 ? 2 'Pjura, P.' 14 ? 2 'Dickerson, R.E.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') ; 3742.288 2 ? ? ? ? 2 non-polymer syn NETROPSIN 430.464 1 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(CBR)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NETROPSIN NT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 CBR n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NT non-polymer . NETROPSIN ? 'C18 H26 N10 O3' 430.464 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 CBR 9 9 9 CBR C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 CBR 9 21 21 CBR C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT 1 25 25 NT NT B . D 3 HOH 1 26 26 HOH HOH A . D 3 HOH 2 27 27 HOH HOH A . D 3 HOH 3 28 28 HOH HOH A . D 3 HOH 4 30 30 HOH HOH A . D 3 HOH 5 34 34 HOH HOH A . D 3 HOH 6 38 38 HOH HOH A . D 3 HOH 7 39 39 HOH HOH A . D 3 HOH 8 42 42 HOH HOH A . D 3 HOH 9 46 46 HOH HOH A . D 3 HOH 10 49 49 HOH HOH A . D 3 HOH 11 50 50 HOH HOH A . D 3 HOH 12 51 51 HOH HOH A . D 3 HOH 13 52 52 HOH HOH A . D 3 HOH 14 55 55 HOH HOH A . D 3 HOH 15 56 56 HOH HOH A . D 3 HOH 16 57 57 HOH HOH A . D 3 HOH 17 58 58 HOH HOH A . D 3 HOH 18 60 60 HOH HOH A . D 3 HOH 19 61 61 HOH HOH A . D 3 HOH 20 72 72 HOH HOH A . D 3 HOH 21 73 73 HOH HOH A . D 3 HOH 22 78 78 HOH HOH A . D 3 HOH 23 79 79 HOH HOH A . D 3 HOH 24 82 82 HOH HOH A . D 3 HOH 25 84 84 HOH HOH A . D 3 HOH 26 85 85 HOH HOH A . D 3 HOH 27 89 89 HOH HOH A . D 3 HOH 28 90 90 HOH HOH A . D 3 HOH 29 91 91 HOH HOH A . D 3 HOH 30 92 92 HOH HOH A . D 3 HOH 31 94 94 HOH HOH A . D 3 HOH 32 97 97 HOH HOH A . D 3 HOH 33 100 100 HOH HOH A . E 3 HOH 1 29 29 HOH HOH B . E 3 HOH 2 31 31 HOH HOH B . E 3 HOH 3 32 32 HOH HOH B . E 3 HOH 4 33 33 HOH HOH B . E 3 HOH 5 35 35 HOH HOH B . E 3 HOH 6 36 36 HOH HOH B . E 3 HOH 7 37 37 HOH HOH B . E 3 HOH 8 40 40 HOH HOH B . E 3 HOH 9 41 41 HOH HOH B . E 3 HOH 10 43 43 HOH HOH B . E 3 HOH 11 44 44 HOH HOH B . E 3 HOH 12 45 45 HOH HOH B . E 3 HOH 13 47 47 HOH HOH B . E 3 HOH 14 48 48 HOH HOH B . E 3 HOH 15 53 53 HOH HOH B . E 3 HOH 16 54 54 HOH HOH B . E 3 HOH 17 59 59 HOH HOH B . E 3 HOH 18 62 62 HOH HOH B . E 3 HOH 19 63 63 HOH HOH B . E 3 HOH 20 64 64 HOH HOH B . E 3 HOH 21 65 65 HOH HOH B . E 3 HOH 22 66 66 HOH HOH B . E 3 HOH 23 67 67 HOH HOH B . E 3 HOH 24 68 68 HOH HOH B . E 3 HOH 25 69 69 HOH HOH B . E 3 HOH 26 70 70 HOH HOH B . E 3 HOH 27 71 71 HOH HOH B . E 3 HOH 28 74 74 HOH HOH B . E 3 HOH 29 75 75 HOH HOH B . E 3 HOH 30 76 76 HOH HOH B . E 3 HOH 31 77 77 HOH HOH B . E 3 HOH 32 80 80 HOH HOH B . E 3 HOH 33 81 81 HOH HOH B . E 3 HOH 34 83 83 HOH HOH B . E 3 HOH 35 86 86 HOH HOH B . E 3 HOH 36 87 87 HOH HOH B . E 3 HOH 37 88 88 HOH HOH B . E 3 HOH 38 93 93 HOH HOH B . E 3 HOH 39 95 95 HOH HOH B . E 3 HOH 40 96 96 HOH HOH B . E 3 HOH 41 98 98 HOH HOH B . E 3 HOH 42 99 99 HOH HOH B . # _software.name JACK-LEVITT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 6BNA _cell.length_a 24.270 _cell.length_b 39.620 _cell.length_c 63.570 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BNA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 6BNA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.76 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 SPERMINE_HCL ? ? ? 1 4 1 'MG ACETATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 6BNA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.200 _reflns.number_obs 3240 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 6BNA _refine.ls_number_reflns_obs 2528 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.210 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 594 _refine_hist.d_res_high 2.210 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 6BNA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 6BNA _struct.title 'BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 6BNA _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 6BNA _struct_ref.pdbx_db_accession 6BNA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6BNA A 1 ? 12 ? 6BNA 1 ? 12 ? 1 12 2 1 6BNA B 1 ? 12 ? 6BNA 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A CBR 9 P ? ? A DT 8 A CBR 9 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale2 covale both ? A CBR 9 "O3'" ? ? ? 1_555 A DG 10 P ? ? A CBR 9 A DG 10 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale both ? B DT 8 "O3'" ? ? ? 1_555 B CBR 9 P ? ? B DT 20 B CBR 21 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale4 covale both ? B CBR 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B CBR 21 B DG 22 1_555 ? ? ? ? ? ? ? 1.646 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B CBR 9 N3 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B CBR 9 O2 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B CBR 9 N4 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A CBR 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A CBR 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A CBR 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NT 25 ? 11 'BINDING SITE FOR RESIDUE NT B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DA A 5 ? DA A 5 . ? 1_555 ? 2 AC1 11 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 11 DT A 7 ? DT A 7 . ? 1_555 ? 4 AC1 11 DT A 8 ? DT A 8 . ? 1_555 ? 5 AC1 11 CBR A 9 ? CBR A 9 . ? 1_555 ? 6 AC1 11 DA B 5 ? DA B 17 . ? 1_555 ? 7 AC1 11 DA B 6 ? DA B 18 . ? 1_555 ? 8 AC1 11 DT B 8 ? DT B 20 . ? 1_555 ? 9 AC1 11 CBR B 9 ? CBR B 21 . ? 1_555 ? 10 AC1 11 DG B 10 ? DG B 22 . ? 1_555 ? 11 AC1 11 HOH E . ? HOH B 66 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.418 1.521 -0.103 0.010 N 2 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.352 1.419 -0.067 0.006 N 3 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.398 1.339 0.059 0.008 N 4 1 "O3'" A DC 1 ? ? P A DG 2 ? ? 1.532 1.607 -0.075 0.012 Y 5 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.401 1.350 0.051 0.007 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.316 1.388 -0.072 0.006 N 7 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.660 1.593 0.067 0.010 N 8 1 N1 A DC 3 ? ? C2 A DC 3 ? ? 1.336 1.397 -0.061 0.010 N 9 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.359 1.446 -0.087 0.010 N 10 1 N9 A DG 4 ? ? C4 A DG 4 ? ? 1.324 1.375 -0.051 0.008 N 11 1 "O3'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.362 1.419 -0.057 0.006 N 12 1 C5 A DA 5 ? ? N7 A DA 5 ? ? 1.317 1.388 -0.071 0.006 N 13 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.404 1.521 -0.117 0.010 N 14 1 "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.431 1.518 -0.087 0.010 N 15 1 C5 A DA 6 ? ? C6 A DA 6 ? ? 1.477 1.406 0.071 0.009 N 16 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.351 1.388 -0.037 0.006 N 17 1 C6 A DA 6 ? ? N6 A DA 6 ? ? 1.394 1.335 0.059 0.008 N 18 1 "O3'" A DA 6 ? ? P A DT 7 ? ? 1.486 1.607 -0.121 0.012 Y 19 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.500 1.593 -0.093 0.010 N 20 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.340 1.446 -0.106 0.010 N 21 1 "O3'" A DT 7 ? ? "C3'" A DT 7 ? ? 1.374 1.419 -0.045 0.006 N 22 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.405 1.339 0.066 0.007 N 23 1 P A DT 8 ? ? OP2 A DT 8 ? ? 1.292 1.485 -0.193 0.017 N 24 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.380 1.446 -0.066 0.010 N 25 1 C5 A DT 8 ? ? C6 A DT 8 ? ? 1.407 1.339 0.068 0.007 N 26 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.412 1.350 0.062 0.007 N 27 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.335 1.388 -0.053 0.006 N 28 1 C5 A DC 11 ? ? C6 A DC 11 ? ? 1.405 1.339 0.066 0.008 N 29 1 C5 A DG 12 ? ? N7 A DG 12 ? ? 1.349 1.388 -0.039 0.006 N 30 1 N9 A DG 12 ? ? C4 A DG 12 ? ? 1.320 1.375 -0.055 0.008 N 31 1 C5 B DC 13 ? ? C6 B DC 13 ? ? 1.399 1.339 0.060 0.008 N 32 1 P B DC 15 ? ? OP1 B DC 15 ? ? 1.342 1.485 -0.143 0.017 N 33 1 N3 B DG 16 ? ? C4 B DG 16 ? ? 1.394 1.350 0.044 0.007 N 34 1 C5 B DG 16 ? ? N7 B DG 16 ? ? 1.347 1.388 -0.041 0.006 N 35 1 N3 B DA 17 ? ? C4 B DA 17 ? ? 1.395 1.344 0.051 0.006 N 36 1 C5 B DA 17 ? ? N7 B DA 17 ? ? 1.325 1.388 -0.063 0.006 N 37 1 N3 B DA 18 ? ? C4 B DA 18 ? ? 1.383 1.344 0.039 0.006 N 38 1 C5 B DT 19 ? ? C6 B DT 19 ? ? 1.401 1.339 0.062 0.007 N 39 1 C5 B DT 20 ? ? C6 B DT 20 ? ? 1.398 1.339 0.059 0.007 N 40 1 "O3'" B DG 22 ? ? "C3'" B DG 22 ? ? 1.351 1.419 -0.068 0.006 N 41 1 C5 B DG 22 ? ? N7 B DG 22 ? ? 1.339 1.388 -0.049 0.006 N 42 1 N7 B DG 22 ? ? C8 B DG 22 ? ? 1.350 1.305 0.045 0.006 N 43 1 "O3'" B DG 22 ? ? P B DC 23 ? ? 1.535 1.607 -0.072 0.012 Y 44 1 "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 1.362 1.446 -0.084 0.010 N 45 1 C5 B DC 23 ? ? C6 B DC 23 ? ? 1.390 1.339 0.051 0.008 N 46 1 C5 B DG 24 ? ? N7 B DG 24 ? ? 1.347 1.388 -0.041 0.006 N 47 1 N7 B DG 24 ? ? C8 B DG 24 ? ? 1.363 1.305 0.058 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 122.42 109.80 12.62 1.10 N 2 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 110.27 103.10 7.17 0.90 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.08 108.30 4.78 0.30 N 4 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 99.35 109.40 -10.05 0.80 N 5 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 115.69 111.90 3.79 0.50 N 6 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 124.18 128.60 -4.42 0.50 N 7 1 N3 A DG 2 ? ? C4 A DG 2 ? ? N9 A DG 2 ? ? 130.42 126.00 4.42 0.60 N 8 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.64 110.10 -7.46 1.00 N 9 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 110.99 106.80 4.19 0.50 N 10 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.49 119.90 3.59 0.50 N 11 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 108.70 105.40 3.30 0.40 N 12 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DA 5 ? ? 127.21 119.70 7.51 1.20 Y 13 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.32 108.30 2.02 0.30 N 14 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 113.91 110.60 3.31 0.50 N 15 1 C8 A DA 5 ? ? N9 A DA 5 ? ? C4 A DA 5 ? ? 101.97 105.80 -3.83 0.40 N 16 1 N9 A DA 5 ? ? C4 A DA 5 ? ? C5 A DA 5 ? ? 108.69 105.80 2.89 0.40 N 17 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "O4'" A DA 6 ? ? 119.88 109.80 10.08 1.10 N 18 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 115.57 110.30 5.27 0.70 N 19 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 99.17 105.90 -6.73 0.80 N 20 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 98.68 109.40 -10.72 0.80 N 21 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 122.80 127.20 -4.40 0.60 N 22 1 C5 A DT 7 ? ? C6 A DT 7 ? ? N1 A DT 7 ? ? 119.28 123.70 -4.42 0.60 N 23 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 114.59 119.90 -5.31 0.60 N 24 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 124.37 119.00 5.37 0.60 N 25 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.17 122.90 -6.73 0.60 N 26 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.92 119.70 9.22 1.20 Y 27 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.24 115.20 4.04 0.60 N 28 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 116.25 119.90 -3.65 0.60 N 29 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 124.71 119.00 5.71 0.60 N 30 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 116.93 122.90 -5.97 0.60 N 31 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 99.12 105.70 -6.58 0.90 N 32 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 103.76 109.40 -5.64 0.80 N 33 1 "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 123.90 115.70 8.20 1.20 N 34 1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 96.52 102.20 -5.68 0.70 N 35 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 114.07 108.30 5.77 0.30 N 36 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 98.55 109.40 -10.85 0.80 N 37 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 101.34 108.00 -6.66 0.70 N 38 1 C2 A DG 12 ? ? N3 A DG 12 ? ? C4 A DG 12 ? ? 115.99 111.90 4.09 0.50 N 39 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 114.56 111.50 3.06 0.50 N 40 1 "O4'" B DC 13 ? ? "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? 110.06 106.00 4.06 0.60 N 41 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 111.09 108.30 2.79 0.30 N 42 1 C6 B DC 13 ? ? N1 B DC 13 ? ? C2 B DC 13 ? ? 123.99 120.30 3.69 0.40 N 43 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 109.77 106.00 3.77 0.60 N 44 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 119.79 123.90 -4.11 0.60 N 45 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 117.17 111.90 5.27 0.50 N 46 1 N3 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 125.59 128.60 -3.01 0.50 N 47 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 114.64 111.50 3.14 0.50 N 48 1 C8 B DG 14 ? ? N9 B DG 14 ? ? C4 B DG 14 ? ? 104.00 106.40 -2.40 0.40 N 49 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 115.56 119.90 -4.34 0.60 N 50 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 95.52 105.70 -10.18 0.90 N 51 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 116.68 108.30 8.38 0.30 N 52 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.93 109.40 -5.47 0.80 N 53 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? 110.23 106.00 4.23 0.60 N 54 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? "C2'" B DG 16 ? ? 110.35 106.80 3.55 0.50 N 55 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.29 108.30 3.99 0.30 N 56 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 122.49 118.60 3.89 0.60 N 57 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.43 118.60 3.83 0.60 N 58 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.44 129.30 -4.86 0.50 N 59 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 113.69 110.60 3.09 0.50 N 60 1 C5 B DA 18 ? ? N7 B DA 18 ? ? C8 B DA 18 ? ? 100.80 103.90 -3.10 0.50 N 61 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.49 108.30 2.19 0.30 N 62 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 118.42 114.60 3.82 0.60 N 63 1 N3 B DT 19 ? ? C2 B DT 19 ? ? O2 B DT 19 ? ? 118.18 122.30 -4.12 0.60 N 64 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 122.83 119.00 3.83 0.60 N 65 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.79 122.90 -4.11 0.60 N 66 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 100.49 104.50 -4.01 0.40 N 67 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 99.26 105.90 -6.64 0.80 N 68 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 123.32 127.20 -3.88 0.60 N 69 1 "O3'" B DT 20 ? ? P B CBR 21 ? ? OP2 B CBR 21 ? ? 117.17 110.50 6.67 1.10 Y 70 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.91 104.50 -2.59 0.40 N 71 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.98 108.30 2.68 0.30 N 72 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 101.99 109.40 -7.41 0.80 N 73 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? 123.18 115.70 7.48 1.20 N 74 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 123.08 119.90 3.18 0.50 N 75 1 N1 B DG 24 ? ? C2 B DG 24 ? ? N3 B DG 24 ? ? 119.34 123.90 -4.56 0.60 N 76 1 C2 B DG 24 ? ? N3 B DG 24 ? ? C4 B DG 24 ? ? 116.96 111.90 5.06 0.50 N 77 1 N3 B DG 24 ? ? C4 B DG 24 ? ? C5 B DG 24 ? ? 125.54 128.60 -3.06 0.50 N 78 1 N9 B DG 24 ? ? C4 B DG 24 ? ? C5 B DG 24 ? ? 107.97 105.40 2.57 0.40 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 4 ? ? 0.066 'SIDE CHAIN' 2 1 DG A 10 ? ? 0.091 'SIDE CHAIN' 3 1 DC A 11 ? ? 0.060 'SIDE CHAIN' 4 1 DG A 12 ? ? 0.056 'SIDE CHAIN' 5 1 DG B 14 ? ? 0.070 'SIDE CHAIN' 6 1 DC B 15 ? ? 0.102 'SIDE CHAIN' 7 1 DG B 16 ? ? 0.095 'SIDE CHAIN' 8 1 DT B 19 ? ? 0.098 'SIDE CHAIN' 9 1 DG B 24 ? ? 0.086 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 9 A CBR 9 ? DC ? 2 B CBR 9 B CBR 21 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 NT C1 C N N 181 NT N1 N N N 182 NT N2 N N N 183 NT N3 N N N 184 NT C2 C N N 185 NT C3 C N N 186 NT O1 O N N 187 NT N4 N N N 188 NT C4 C Y N 189 NT C5 C Y N 190 NT C6 C Y N 191 NT N5 N Y N 192 NT C8 C N N 193 NT C7 C Y N 194 NT C9 C N N 195 NT O2 O N N 196 NT N6 N N N 197 NT C10 C Y N 198 NT C11 C Y N 199 NT C12 C Y N 200 NT N7 N Y N 201 NT C14 C N N 202 NT C13 C Y N 203 NT C15 C N N 204 NT O3 O N N 205 NT N8 N N N 206 NT C16 C N N 207 NT C17 C N N 208 NT C18 C N N 209 NT N9 N N N 210 NT N10 N N N 211 NT HN1 H N N 212 NT HN21 H N N 213 NT HN22 H N N 214 NT HN3 H N N 215 NT H21 H N N 216 NT H22 H N N 217 NT HN4 H N N 218 NT H5 H N N 219 NT H81 H N N 220 NT H82 H N N 221 NT H83 H N N 222 NT H7 H N N 223 NT HN6 H N N 224 NT H11 H N N 225 NT H141 H N N 226 NT H142 H N N 227 NT H143 H N N 228 NT H13 H N N 229 NT HN8 H N N 230 NT H161 H N N 231 NT H162 H N N 232 NT H171 H N N 233 NT H172 H N N 234 NT HN9 H N N 235 NT HN01 H N N 236 NT HN02 H N N 237 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 NT C1 N1 doub N N 187 NT C1 N2 sing N N 188 NT C1 N3 sing N N 189 NT N1 HN1 sing N N 190 NT N2 HN21 sing N N 191 NT N2 HN22 sing N N 192 NT N3 C2 sing N N 193 NT N3 HN3 sing N N 194 NT C2 C3 sing N N 195 NT C2 H21 sing N N 196 NT C2 H22 sing N N 197 NT C3 O1 doub N N 198 NT C3 N4 sing N N 199 NT N4 C4 sing N N 200 NT N4 HN4 sing N N 201 NT C4 C5 sing Y N 202 NT C4 C7 doub Y N 203 NT C5 C6 doub Y N 204 NT C5 H5 sing N N 205 NT C6 N5 sing Y N 206 NT C6 C9 sing N N 207 NT N5 C8 sing N N 208 NT N5 C7 sing Y N 209 NT C8 H81 sing N N 210 NT C8 H82 sing N N 211 NT C8 H83 sing N N 212 NT C7 H7 sing N N 213 NT C9 O2 doub N N 214 NT C9 N6 sing N N 215 NT N6 C10 sing N N 216 NT N6 HN6 sing N N 217 NT C10 C11 sing Y N 218 NT C10 C13 doub Y N 219 NT C11 C12 doub Y N 220 NT C11 H11 sing N N 221 NT C12 N7 sing Y N 222 NT C12 C15 sing N N 223 NT N7 C14 sing N N 224 NT N7 C13 sing Y N 225 NT C14 H141 sing N N 226 NT C14 H142 sing N N 227 NT C14 H143 sing N N 228 NT C13 H13 sing N N 229 NT C15 O3 doub N N 230 NT C15 N8 sing N N 231 NT N8 C16 sing N N 232 NT N8 HN8 sing N N 233 NT C16 C17 sing N N 234 NT C16 H161 sing N N 235 NT C16 H162 sing N N 236 NT C17 C18 sing N N 237 NT C17 H171 sing N N 238 NT C17 H172 sing N N 239 NT C18 N9 doub N N 240 NT C18 N10 sing N N 241 NT N9 HN9 sing N N 242 NT N10 HN01 sing N N 243 NT N10 HN02 sing N N 244 # _ndb_struct_conf_na.entry_id 6BNA _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.365 -0.274 -0.015 -5.504 -15.807 -3.424 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.452 -0.305 0.125 -2.482 -13.730 -0.561 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.263 -0.181 0.113 -3.993 -4.548 2.481 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B CBR 9 1_555 -0.164 -0.150 -0.182 8.690 -5.783 1.757 4 A_DG4:CBR21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.604 -0.090 0.252 10.767 -19.744 2.296 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.135 -0.120 0.229 7.510 -20.948 7.923 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.079 -0.056 0.021 -2.874 -25.128 -0.685 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.290 0.086 0.321 -14.620 -22.200 3.769 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A CBR 9 1_555 B DG 4 1_555 0.264 -0.241 0.213 -18.365 -17.342 -2.986 9 A_CBR9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.432 -0.101 0.342 10.894 -9.155 0.865 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.576 -0.345 0.321 -3.949 -19.477 -4.874 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.356 -0.207 -0.529 -2.704 2.572 -4.922 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.118 0.403 3.413 -4.897 4.388 29.965 -0.150 -0.796 3.412 8.361 9.331 30.662 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.955 0.836 3.308 3.618 -10.588 44.822 1.971 -0.911 3.109 -13.635 -4.659 46.128 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B CBR 9 1_555 -0.336 0.792 3.129 5.000 6.177 26.627 0.199 1.875 3.117 13.047 -10.561 27.768 3 AA_DC3DG4:CBR21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B CBR 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.090 -0.080 3.299 -4.738 -1.528 41.715 0.049 -0.372 3.291 -2.137 6.625 41.998 4 AA_DG4DA5:DT20CBR21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.178 -0.157 3.161 1.146 7.213 32.889 -1.403 -0.128 3.063 12.548 -1.993 33.668 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.502 -0.512 3.427 -0.756 1.201 32.203 -1.146 0.764 3.417 2.165 1.363 32.234 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.128 0.088 3.587 0.008 1.972 37.259 -0.149 -0.198 3.587 3.083 -0.013 37.309 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A CBR 9 1_555 B DG 4 1_555 0.122 0.619 3.535 1.249 -0.985 40.478 1.013 -0.026 3.522 -1.423 -1.805 40.508 8 AA_DT8CBR9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A CBR 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.091 0.941 2.786 -1.677 2.347 25.876 1.534 -0.598 2.847 5.221 3.730 26.034 9 AA_CBR9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.638 0.828 3.918 -1.821 -11.927 46.944 2.098 0.612 3.638 -14.689 2.243 48.385 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.840 0.597 3.566 5.946 -4.506 37.664 1.527 -0.461 3.561 -6.897 -9.101 38.369 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 6BNA _atom_sites.fract_transf_matrix[1][1] 0.041203 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025240 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015731 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_