HEADER PLANT PROTEIN 17-NOV-17 6BNN TITLE CRYSTAL STRUCTURE OF V278E-GLYOXALASE I MUTANT FROM ZEA MAYS IN SPACE TITLE 2 GROUP P4(1)2(1)2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYOXALASE I; COMPND 5 EC: 4.4.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28B KEYWDS PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.E.ALVAREZ,R.B.AGOSTINI,J.M.GONZALEZ,M.F.DRINCOVICH,V.A.CAMPOS AUTHOR 2 BERMUDEZ,S.KLINKE REVDAT 4 04-OCT-23 6BNN 1 REMARK REVDAT 3 04-SEP-19 6BNN 1 JRNL REVDAT 2 05-JUN-19 6BNN 1 JRNL REVDAT 1 21-NOV-18 6BNN 0 JRNL AUTH J.M.GONZALEZ,R.B.AGOSTINI,C.E.ALVAREZ,S.KLINKE,C.S.ANDREO, JRNL AUTH 2 V.A.CAMPOS-BERMUDEZ JRNL TITL DECIPHERING THE NUMBER AND LOCATION OF ACTIVE SITES IN THE JRNL TITL 2 MONOMERIC GLYOXALASE I OF ZEA MAYS. JRNL REF FEBS J. V. 286 3255 2019 JRNL REFN ISSN 1742-464X JRNL PMID 30993890 JRNL DOI 10.1111/FEBS.14855 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.4210 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2309 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3117 ; 1.812 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 6.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.446 ;24.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;12.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1750 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 2.254 ; 2.654 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1410 ; 3.250 ; 3.968 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 3.300 ; 2.969 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3550 ; 6.172 ;37.262 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CHANNEL CUT REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : CONVEX PREFOCUSSING MIRROR AND A REMARK 200 KIRKPATRICK-BAEZ PAIR OF REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D7Z REMARK 200 REMARK 200 REMARK: OVAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE 4.2 M PH 9.7 0.5% PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.72000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.97500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.86000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.97500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.58000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.97500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.86000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.97500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.97500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.58000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 592 O HOH A 593 1.93 REMARK 500 O LEU A 289 O HOH A 401 1.94 REMARK 500 O HOH A 548 O HOH A 622 2.01 REMARK 500 O HOH A 403 O HOH A 571 2.08 REMARK 500 O HOH A 402 O HOH A 597 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 556 O HOH A 556 7555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 88.44 -153.70 REMARK 500 ASP A 150 75.16 -161.87 REMARK 500 ALA A 223 -60.35 -96.59 REMARK 500 LEU A 253 -61.77 -96.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 GLU A 144 OE1 88.6 REMARK 620 3 GLN A 157 OE1 97.0 90.2 REMARK 620 4 GLU A 208 OE1 99.6 169.2 81.9 REMARK 620 5 HOH A 497 O 165.1 87.0 97.3 86.7 REMARK 620 6 HOH A 532 O 94.9 93.5 167.6 92.8 71.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D7Z RELATED DB: PDB REMARK 900 WT PROTEIN DBREF 6BNN A 1 290 UNP B6TPH0 B6TPH0_MAIZE 26 315 SEQADV 6BNN GLY A -5 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN SER A -4 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN HIS A -3 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN MET A -2 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN ALA A -1 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN SER A 0 UNP B6TPH0 EXPRESSION TAG SEQADV 6BNN GLU A 278 UNP B6TPH0 VAL 303 ENGINEERED MUTATION SEQRES 1 A 296 GLY SER HIS MET ALA SER MET ALA THR GLY SER GLU ALA SEQRES 2 A 296 SER LYS ALA ALA GLU ALA VAL VAL ASP TRP HIS LYS HIS SEQRES 3 A 296 ASP SER LYS ARG MET LEU HIS ALA VAL TYR ARG VAL GLY SEQRES 4 A 296 ASP LEU ASP ARG THR ILE LYS TYR TYR THR GLU CYS PHE SEQRES 5 A 296 GLY MET LYS LEU LEU ARG LYS ARG ASP VAL PRO ASP GLU SEQRES 6 A 296 LYS TYR THR ASN ALA PHE LEU GLY PHE GLY PRO GLU ASN SEQRES 7 A 296 THR ASN PHE ALA VAL GLU LEU THR TYR ASN TYR GLY VAL SEQRES 8 A 296 ASP LYS TYR ASP ILE GLY THR GLY PHE GLY HIS PHE ALA SEQRES 9 A 296 ILE ALA ASN ASP ASP VAL TYR LYS LEU ALA GLU ASN ILE SEQRES 10 A 296 LYS SER LYS GLY GLY LYS ILE THR ARG GLU PRO GLY PRO SEQRES 11 A 296 VAL LYS GLY GLY SER THR VAL ILE ALA PHE ALA GLN ASP SEQRES 12 A 296 PRO ASP GLY TYR MET PHE GLU LEU ILE GLN ARG ALA ASP SEQRES 13 A 296 THR PRO GLU PRO LEU CYS GLN VAL MET LEU ARG VAL GLY SEQRES 14 A 296 ASP LEU GLU ARG SER ILE LYS PHE TYR GLU LYS ALA LEU SEQRES 15 A 296 GLY MET LYS LEU LEU ARG LYS LYS ASP VAL PRO ASP TYR SEQRES 16 A 296 LYS TYR THR ILE ALA MET LEU GLY TYR ALA ASP GLU ASP SEQRES 17 A 296 LYS THR THR VAL LEU GLU LEU THR TYR ASN TYR GLY VAL SEQRES 18 A 296 THR GLU TYR SER LYS GLY ASN ALA TYR ALA GLN VAL ALA SEQRES 19 A 296 ILE GLY THR ASN ASP VAL TYR LYS SER ALA GLU ALA VAL SEQRES 20 A 296 ASP LEU ALA THR LYS GLU LEU GLY GLY LYS ILE LEU ARG SEQRES 21 A 296 GLN PRO GLY PRO LEU PRO GLY ILE ASN THR LYS ILE ALA SEQRES 22 A 296 SER PHE VAL ASP PRO ASP GLY TRP LYS VAL GLU LEU VAL SEQRES 23 A 296 ASP ASN THR ASP PHE LEU LYS GLU LEU HIS HET GSH A 301 20 HET CO A 302 1 HET FMT A 303 3 HET FMT A 304 3 HETNAM GSH GLUTATHIONE HETNAM CO COBALT (II) ION HETNAM FMT FORMIC ACID FORMUL 2 GSH C10 H17 N3 O6 S FORMUL 3 CO CO 2+ FORMUL 4 FMT 2(C H2 O2) FORMUL 6 HOH *223(H2 O) HELIX 1 AA1 LYS A 9 ASP A 21 1 13 HELIX 2 AA2 ASP A 34 CYS A 45 1 12 HELIX 3 AA3 PRO A 57 GLU A 59 5 3 HELIX 4 AA4 ASP A 103 LYS A 114 1 12 HELIX 5 AA5 ASP A 164 GLY A 177 1 14 HELIX 6 AA6 PRO A 187 TYR A 189 5 3 HELIX 7 AA7 ASP A 200 THR A 204 5 5 HELIX 8 AA8 ASP A 233 GLY A 249 1 17 HELIX 9 AA9 THR A 283 LEU A 289 5 7 SHEET 1 AA1 8 LYS A 49 VAL A 56 0 SHEET 2 AA1 8 TYR A 61 GLY A 67 -1 O GLY A 67 N LYS A 49 SHEET 3 AA1 8 ALA A 76 ASN A 82 -1 O LEU A 79 N ALA A 64 SHEET 4 AA1 8 ARG A 24 ARG A 31 1 N ALA A 28 O GLU A 78 SHEET 5 AA1 8 TYR A 224 THR A 231 -1 O GLY A 230 N ARG A 24 SHEET 6 AA1 8 LYS A 276 ASP A 281 1 O GLU A 278 N ILE A 229 SHEET 7 AA1 8 LYS A 265 VAL A 270 -1 N ALA A 267 O LEU A 279 SHEET 8 AA1 8 LYS A 251 PRO A 258 -1 N LYS A 251 O VAL A 270 SHEET 1 AA2 8 LYS A 117 PRO A 124 0 SHEET 2 AA2 8 VAL A 131 GLN A 136 -1 O ILE A 132 N GLY A 123 SHEET 3 AA2 8 MET A 142 GLN A 147 -1 O PHE A 143 N ALA A 135 SHEET 4 AA2 8 PHE A 94 ASN A 101 1 N ILE A 99 O GLU A 144 SHEET 5 AA2 8 LEU A 155 ARG A 161 -1 O MET A 159 N HIS A 96 SHEET 6 AA2 8 VAL A 206 ASN A 212 1 O GLU A 208 N VAL A 158 SHEET 7 AA2 8 TYR A 191 GLY A 197 -1 N LEU A 196 O LEU A 207 SHEET 8 AA2 8 LYS A 179 VAL A 186 -1 N VAL A 186 O TYR A 191 LINK NE2 HIS A 96 CO CO A 302 1555 1555 2.15 LINK OE1 GLU A 144 CO CO A 302 1555 1555 2.04 LINK OE1 GLN A 157 CO CO A 302 1555 1555 2.09 LINK OE1 GLU A 208 CO CO A 302 1555 1555 2.07 LINK CO CO A 302 O HOH A 497 1555 1555 1.99 LINK CO CO A 302 O HOH A 532 1555 1555 2.12 SITE 1 AC1 8 ARG A 120 VAL A 125 LYS A 126 MET A 159 SITE 2 AC1 8 ARG A 161 TYR A 191 ASN A 212 FMT A 303 SITE 1 AC2 6 HIS A 96 GLU A 144 GLN A 157 GLU A 208 SITE 2 AC2 6 HOH A 497 HOH A 532 SITE 1 AC3 6 ASN A 72 ARG A 161 GSH A 301 HOH A 454 SITE 2 AC3 6 HOH A 467 HOH A 496 SITE 1 AC4 6 LYS A 49 GLY A 69 PRO A 70 ASP A 89 SITE 2 AC4 6 ILE A 90 GLY A 91 CRYST1 69.950 69.950 119.440 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008372 0.00000