HEADER ISOMERASE 27-NOV-17 6BQ9 TITLE 2.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF N-TERMINAL FRAGMENT TITLE 2 (RESIDUES 1-493) OF DNA TOPOISOMERASE IV SUBUNIT A FROM PSEUDOMONAS TITLE 3 PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 4 SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 5 SYNONYM: TOPOISOMERASE IV SUBUNIT A; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA (STRAIN ATCC 47054 / DSM SOURCE 3 6125 / NCIMB 11950 / KT2440); SOURCE 4 ORGANISM_TAXID: 160488; SOURCE 5 STRAIN: ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440; SOURCE 6 GENE: PARC, PP_4912; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, DNA TOPOISOMERASE IV, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW,K.KWON, AUTHOR 2 W.F.ANDERSON,K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 04-OCT-23 6BQ9 1 REMARK REVDAT 1 06-DEC-17 6BQ9 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,S.GRIMSHAW, JRNL AUTH 2 K.KWON,W.F.ANDERSON,K.J.F.SATCHELL,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF N-TERMINAL JRNL TITL 2 FRAGMENT (RESIDUES 1-493) OF DNA TOPOISOMERASE IV SUBUNIT A JRNL TITL 3 FROM PSEUDOMONAS PUTIDA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 28738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4190 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.40000 REMARK 3 B22 (A**2) : -8.77000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3688 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3550 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4993 ; 1.410 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8207 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 2.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;21.992 ;23.446 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ; 9.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;10.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4081 ; 0.023 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 727 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 3.021 ; 7.023 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1826 ; 3.003 ; 7.020 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 4.814 ;10.531 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2283 ; 4.814 ;10.534 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1861 ; 3.091 ; 7.296 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1862 ; 3.090 ; 7.299 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2712 ; 4.965 ;10.820 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4092 ; 7.329 ;82.993 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4089 ; 7.326 ;82.971 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7599 -33.1745 16.6466 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0471 REMARK 3 T33: 0.1665 T12: 0.0546 REMARK 3 T13: -0.0916 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.0235 L22: 0.5983 REMARK 3 L33: 5.9441 L12: 1.3308 REMARK 3 L13: 2.2294 L23: 1.1975 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: -0.0083 S13: 0.0199 REMARK 3 S21: 0.0422 S22: 0.0122 S23: 0.0194 REMARK 3 S31: 0.4317 S32: 0.2536 S33: -0.0907 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2927 -30.9777 14.7055 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0794 REMARK 3 T33: 0.1110 T12: 0.0118 REMARK 3 T13: -0.0786 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 3.6584 L22: 2.0108 REMARK 3 L33: 6.4417 L12: -0.8333 REMARK 3 L13: 0.8408 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: 0.1146 S13: -0.0869 REMARK 3 S21: -0.1628 S22: 0.0324 S23: 0.1364 REMARK 3 S31: 0.2595 S32: 0.6199 S33: -0.2045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6841 -33.5516 6.7232 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1078 REMARK 3 T33: 0.1948 T12: 0.0074 REMARK 3 T13: -0.0665 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.6338 L22: 0.3564 REMARK 3 L33: 3.4769 L12: -0.2214 REMARK 3 L13: 0.5024 L23: -0.3169 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: 0.2098 S13: -0.0175 REMARK 3 S21: -0.1555 S22: 0.0555 S23: 0.1171 REMARK 3 S31: -0.2407 S32: 0.0149 S33: 0.0703 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4551 -46.9674 -7.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.2299 REMARK 3 T33: 0.1261 T12: -0.0026 REMARK 3 T13: -0.0619 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 4.0722 L22: 3.0984 REMARK 3 L33: 0.3617 L12: -2.7876 REMARK 3 L13: 0.0316 L23: 0.4073 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.4326 S13: -0.1537 REMARK 3 S21: -0.5243 S22: -0.1821 S23: 0.2067 REMARK 3 S31: -0.2004 S32: 0.0494 S33: 0.1830 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6781 -56.3165 -10.0271 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1673 REMARK 3 T33: 0.1053 T12: -0.0308 REMARK 3 T13: 0.0057 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 5.9604 L22: 4.8212 REMARK 3 L33: 3.6337 L12: -4.8858 REMARK 3 L13: -1.5368 L23: 1.5031 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: 0.3650 S13: -0.2011 REMARK 3 S21: -0.4190 S22: -0.3127 S23: 0.1020 REMARK 3 S31: -0.2359 S32: -0.0209 S33: 0.2191 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9547 -2.2926 15.6603 REMARK 3 T TENSOR REMARK 3 T11: 0.6236 T22: 0.1224 REMARK 3 T33: 0.2545 T12: 0.1552 REMARK 3 T13: -0.0657 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.8732 L22: 5.2999 REMARK 3 L33: 1.8860 L12: 1.4352 REMARK 3 L13: 0.6322 L23: 2.5342 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0780 S13: 0.1204 REMARK 3 S21: -0.0659 S22: -0.2251 S23: 0.7725 REMARK 3 S31: -0.5104 S32: -0.3163 S33: 0.2256 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 464 A 491 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7854 -25.5727 -6.3092 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.0639 REMARK 3 T33: 0.1079 T12: 0.0359 REMARK 3 T13: -0.0953 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 1.8975 L22: 10.2433 REMARK 3 L33: 1.3587 L12: -0.8490 REMARK 3 L13: -0.4977 L23: 2.5079 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: 0.2729 S13: 0.2012 REMARK 3 S21: -0.9932 S22: -0.2798 S23: -0.0268 REMARK 3 S31: -0.4119 S32: -0.0116 S33: 0.1899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : BE REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.78500 REMARK 200 R SYM FOR SHELL (I) : 0.78500 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5EIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 9.5 MG/ML, 0.01M TRIS HCL (PH REMARK 280 8.3); SCREEN: CLASSICS II (C1), 3.5M SODIUM FORMATE PH (7.0); REMARK 280 CRYO: 4.0M SODIUM FORMATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.87350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.87350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.74700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 112.02850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.74700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.02850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.87350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.74700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 112.02850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.87350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.74700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 112.02850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.87350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 PHE A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 GLN A 23 REMARK 465 ALA A 24 REMARK 465 TYR A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 TYR A 28 REMARK 465 SER A 29 REMARK 465 MET A 30 REMARK 465 TYR A 31 REMARK 465 VAL A 32 REMARK 465 ILE A 33 REMARK 465 MET A 34 REMARK 465 GLU A 492 REMARK 465 ALA A 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 58.25 -92.48 REMARK 500 PRO A 83 43.49 -83.09 REMARK 500 HIS A 84 -64.93 -106.57 REMARK 500 PRO A 119 1.90 -59.30 REMARK 500 SER A 121 33.30 -83.51 REMARK 500 ASN A 153 -168.95 -75.24 REMARK 500 ILE A 179 97.14 -63.48 REMARK 500 ASP A 297 -168.76 -124.31 REMARK 500 ARG A 303 87.77 -159.47 REMARK 500 ASN A 335 82.93 -162.44 REMARK 500 ARG A 490 -74.44 -137.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 180 O REMARK 620 2 MET A 183 O 75.3 REMARK 620 3 ASP A 186 OD2 106.4 106.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP07285 RELATED DB: TARGETTRACK DBREF 6BQ9 A 1 493 UNP Q88DB5 Q88DB5_PSEPK 1 493 SEQADV 6BQ9 SER A -2 UNP Q88DB5 EXPRESSION TAG SEQADV 6BQ9 ASN A -1 UNP Q88DB5 EXPRESSION TAG SEQADV 6BQ9 ALA A 0 UNP Q88DB5 EXPRESSION TAG SEQRES 1 A 496 SER ASN ALA MET SER ASP SER LEU GLU LEU SER LEU ASP SEQRES 2 A 496 GLY VAL GLU ARG ARG SER LEU ALA ASP PHE THR GLU GLN SEQRES 3 A 496 ALA TYR LEU ASN TYR SER MET TYR VAL ILE MET ASP ARG SEQRES 4 A 496 ALA LEU PRO HIS ILE GLY ASP GLY LEU LYS PRO VAL GLN SEQRES 5 A 496 ARG ARG ILE VAL TYR ALA MET SER GLU LEU GLY LEU ASP SEQRES 6 A 496 ALA ASP ALA LYS HIS LYS LYS SER ALA ARG THR VAL GLY SEQRES 7 A 496 ASP VAL LEU GLY LYS PHE HIS PRO HIS GLY ASP SER ALA SEQRES 8 A 496 CYS TYR GLU ALA MET VAL LEU MET ALA GLN PRO PHE SER SEQRES 9 A 496 TYR ARG TYR THR LEU VAL ASP GLY GLN GLY ASN TRP GLY SEQRES 10 A 496 ALA PRO ASP ASP PRO LYS SER PHE ALA ALA MET ARG TYR SEQRES 11 A 496 THR GLU ALA ARG LEU SER ARG TYR ALA GLU VAL LEU LEU SEQRES 12 A 496 SER GLU VAL GLY GLN GLY THR VAL ASP TRP VAL PRO ASN SEQRES 13 A 496 PHE ASP GLY THR LEU GLN GLU PRO ALA VAL LEU PRO ALA SEQRES 14 A 496 ARG LEU PRO ASN ILE LEU LEU ASN GLY THR THR GLY ILE SEQRES 15 A 496 ALA VAL GLY MET ALA THR ASP VAL PRO PRO HIS ASN LEU SEQRES 16 A 496 ARG GLU VAL ALA SER ALA CYS VAL ARG LEU LEU ASP GLU SEQRES 17 A 496 PRO LYS ALA THR ILE GLU GLN LEU CYS GLU HIS ILE GLN SEQRES 18 A 496 GLY PRO ASP TYR PRO THR GLU ALA GLU ILE VAL THR PRO SEQRES 19 A 496 ARG ALA GLU ILE LEU LYS MET TYR GLU SER GLY ARG GLY SEQRES 20 A 496 SER ILE ARG MET ARG ALA VAL TYR ARG VAL GLU ASP GLY SEQRES 21 A 496 ASP ILE VAL VAL THR ALA LEU PRO HIS GLN VAL SER GLY SEQRES 22 A 496 ALA LYS VAL LEU GLU GLN ILE ALA ALA GLN MET GLN ALA SEQRES 23 A 496 LYS LYS LEU PRO MET VAL ALA ASP LEU ARG ASP GLU SER SEQRES 24 A 496 ASP HIS GLU ASN PRO CYS ARG ILE VAL ILE ILE PRO ARG SEQRES 25 A 496 SER ASN ARG VAL ASP VAL ASP GLU LEU MET GLN HIS LEU SEQRES 26 A 496 PHE ALA THR THR ASP LEU GLU SER THR TYR ARG VAL ASN SEQRES 27 A 496 VAL ASN ILE ILE GLY LEU ASP GLY ARG PRO GLN LEU LYS SEQRES 28 A 496 ASN LEU ARG THR LEU LEU VAL GLU TRP LEU GLU PHE ARG SEQRES 29 A 496 THR ASN THR VAL ARG ARG ARG LEU GLN HIS ARG LEU ASP SEQRES 30 A 496 LYS VAL GLU LYS ARG LEU HIS LEU LEU ASP GLY LEU LEU SEQRES 31 A 496 THR ALA PHE LEU ASN LEU ASP GLU VAL ILE HIS ILE ILE SEQRES 32 A 496 ARG THR GLU GLU TYR PRO LYS GLN ALA LEU ILE GLU ARG SEQRES 33 A 496 PHE GLU LEU THR GLU ILE GLN ALA ASP TYR ILE LEU GLU SEQRES 34 A 496 THR ARG LEU ARG GLN LEU ALA ARG LEU GLU GLU MET LYS SEQRES 35 A 496 ILE ARG GLY GLU GLN ASP GLU LEU LEU LYS GLU GLN ALA SEQRES 36 A 496 LYS LEU GLN ALA LEU LEU GLY SER GLU ALA LYS LEU ARG SEQRES 37 A 496 LYS LEU VAL ARG SER GLU LEU ILE LYS ASP ALA GLU THR SEQRES 38 A 496 TYR GLY ASP ASP ARG ARG SER PRO ILE VAL ALA ARG ALA SEQRES 39 A 496 GLU ALA HET NA A 501 1 HET CL A 502 2 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 HOH *76(H2 O) HELIX 1 AA1 LYS A 46 LEU A 59 1 14 HELIX 2 AA2 SER A 70 PHE A 81 1 12 HELIX 3 AA3 GLY A 85 ALA A 97 1 13 HELIX 4 AA4 ALA A 136 SER A 141 1 6 HELIX 5 AA5 PRO A 169 GLY A 175 1 7 HELIX 6 AA6 ASN A 191 GLU A 205 1 15 HELIX 7 AA7 THR A 209 CYS A 214 1 6 HELIX 8 AA8 PRO A 231 GLY A 242 1 12 HELIX 9 AA9 SER A 269 ALA A 283 1 15 HELIX 10 AB1 ASP A 314 THR A 326 1 13 HELIX 11 AB2 ASN A 349 ASN A 392 1 44 HELIX 12 AB3 ASN A 392 THR A 402 1 11 HELIX 13 AB4 TYR A 405 PHE A 414 1 10 HELIX 14 AB5 THR A 417 THR A 427 1 11 HELIX 15 AB6 ARG A 428 ARG A 434 1 7 HELIX 16 AB7 GLU A 436 GLY A 459 1 24 HELIX 17 AB8 SER A 460 GLY A 480 1 21 SHEET 1 AA1 3 LYS A 68 LYS A 69 0 SHEET 2 AA1 3 GLU A 129 LEU A 132 -1 O ALA A 130 N LYS A 68 SHEET 3 AA1 3 VAL A 107 GLN A 110 -1 N GLN A 110 O GLU A 129 SHEET 1 AA2 2 TRP A 113 ALA A 115 0 SHEET 2 AA2 2 ASP A 118 PHE A 122 -1 O ASP A 118 N ALA A 115 SHEET 1 AA3 2 TRP A 150 PRO A 152 0 SHEET 2 AA3 2 GLN A 159 PRO A 161 -1 O GLU A 160 N VAL A 151 SHEET 1 AA4 3 GLU A 227 ILE A 228 0 SHEET 2 AA4 3 ARG A 243 ARG A 249 -1 O ARG A 249 N GLU A 227 SHEET 3 AA4 3 GLU A 329 ASN A 335 -1 O TYR A 332 N ILE A 246 SHEET 1 AA5 4 VAL A 251 GLU A 255 0 SHEET 2 AA5 4 ASP A 258 ALA A 263 -1 O VAL A 260 N ARG A 253 SHEET 3 AA5 4 ILE A 304 PRO A 308 -1 O ILE A 304 N VAL A 261 SHEET 4 AA5 4 VAL A 289 ASP A 294 -1 N ALA A 290 O ILE A 307 SHEET 1 AA6 2 ASN A 337 ILE A 339 0 SHEET 2 AA6 2 PRO A 345 LEU A 347 -1 O GLN A 346 N ILE A 338 LINK O ALA A 180 NA NA A 501 1555 1555 2.58 LINK O MET A 183 NA NA A 501 1555 1555 2.90 LINK OD2 ASP A 186 NA NA A 501 1555 1555 2.36 SITE 1 AC1 4 ALA A 180 MET A 183 ASP A 186 ARG A 293 SITE 1 AC2 6 ARG A 36 ALA A 37 LYS A 46 MET A 183 SITE 2 AC2 6 ALA A 184 THR A 185 CRYST1 71.494 224.057 115.747 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008640 0.00000