HEADER TRANSLATION 27-NOV-17 6BQI TITLE STRUCTURE OF TWO-DOMAIN TRANSLATIONAL REGULATOR YIH1 REVEALS A TITLE 2 POSSIBLE MECHANISM OF ACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN IMPACT HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YIH1, YCR059C, YCR59C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSLATIONAL REGULATION, TRANSLATION EXPDTA SOLUTION NMR; SOLUTION SCATTERING NUMMDL 10 AUTHOR E.HARJES,G.B.JAMESON,P.J.B.EDWARDS,A.K.GORONCY,T.LOO,G.E.NORRIS REVDAT 3 14-JUN-23 6BQI 1 REMARK REVDAT 2 10-FEB-21 6BQI 1 KEYWDS JRNL REMARK HELIX REVDAT 2 2 1 SHEET ATOM REVDAT 1 28-NOV-18 6BQI 0 JRNL AUTH E.HARJES,G.B.JAMESON,Y.H.TU,N.BURR,T.S.LOO,A.K.GORONCY, JRNL AUTH 2 P.J.B.EDWARDS,S.HARJES,B.MUNRO,C.GOBL,E.SATTLEGGER, JRNL AUTH 3 G.E.NORRIS JRNL TITL EXPERIMENTALLY BASED STRUCTURAL MODEL OF YIH1 PROVIDES JRNL TITL 2 INSIGHT INTO ITS FUNCTION IN CONTROLLING THE KEY JRNL TITL 3 TRANSLATIONAL REGULATOR GCN2. JRNL REF FEBS LETT. 2020 JRNL REFN ISSN 0014-5793 JRNL PMID 33156522 JRNL DOI 10.1002/1873-3468.13990 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231210. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] YIH1 (YEAST REMARK 210 IMPACT HOMOLOGUE), 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D 1H-15N REMARK 210 NOESY; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, CARA, ATNOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE AUTHORS STATE THAT CLUSTER 2 (AS IN VALIDATION REPORT, REMARK 210 3 STRUCTURES) IS CONSISTENT WITH SPRE AND MASS SPECTROMETRY DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 106 HZ1 LYS A 173 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -77.44 -101.56 REMARK 500 1 ASP A 29 -92.50 -109.28 REMARK 500 1 SER A 31 -71.98 -13.44 REMARK 500 1 GLN A 39 -36.20 72.15 REMARK 500 1 GLU A 41 78.56 29.63 REMARK 500 1 TYR A 42 -42.01 -164.22 REMARK 500 1 HIS A 52 51.94 -104.95 REMARK 500 1 TYR A 53 153.90 -41.26 REMARK 500 1 PRO A 54 -29.51 -35.83 REMARK 500 1 GLU A 57 -79.37 -128.28 REMARK 500 1 THR A 68 74.78 65.87 REMARK 500 1 SER A 69 -76.79 -105.02 REMARK 500 1 LEU A 70 -85.12 52.98 REMARK 500 1 PHE A 93 -27.17 -27.42 REMARK 500 1 GLU A 114 63.94 61.26 REMARK 500 1 GLU A 116 -158.82 -141.95 REMARK 500 1 GLU A 120 109.46 -58.60 REMARK 500 1 SER A 138 17.55 -168.67 REMARK 500 1 THR A 156 -143.56 -76.33 REMARK 500 1 SER A 191 -167.64 -100.68 REMARK 500 1 ASP A 197 121.09 -177.54 REMARK 500 1 ASN A 221 -2.74 69.54 REMARK 500 1 ILE A 235 -70.22 68.21 REMARK 500 2 ASP A 2 -87.33 -106.32 REMARK 500 2 GLN A 39 -30.54 80.98 REMARK 500 2 TYR A 42 -30.73 -138.53 REMARK 500 2 HIS A 52 59.20 -103.60 REMARK 500 2 TYR A 53 160.20 -37.19 REMARK 500 2 PRO A 54 -27.19 -37.73 REMARK 500 2 GLU A 57 -91.64 -108.58 REMARK 500 2 ALA A 58 160.44 168.03 REMARK 500 2 THR A 68 -57.37 -165.65 REMARK 500 2 SER A 69 11.43 57.84 REMARK 500 2 VAL A 98 21.92 -79.64 REMARK 500 2 CYS A 99 -8.24 72.04 REMARK 500 2 VAL A 113 -168.75 -75.83 REMARK 500 2 GLU A 117 15.00 -147.72 REMARK 500 2 GLN A 123 98.77 -69.50 REMARK 500 2 SER A 138 18.11 -176.60 REMARK 500 2 ARG A 144 107.32 -53.39 REMARK 500 2 THR A 156 -142.97 -77.63 REMARK 500 2 THR A 170 17.66 -66.03 REMARK 500 2 ASP A 200 -84.32 44.53 REMARK 500 2 ASP A 201 -7.33 71.13 REMARK 500 2 ASN A 221 62.88 61.42 REMARK 500 2 ILE A 235 -73.02 64.90 REMARK 500 3 ASP A 2 -61.41 -103.27 REMARK 500 3 GLN A 27 -167.54 -120.50 REMARK 500 3 ASP A 29 -100.02 -112.98 REMARK 500 3 SER A 31 -47.28 -11.34 REMARK 500 REMARK 500 THIS ENTRY HAS 304 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30375 RELATED DB: BMRB REMARK 900 STRUCTURE OF TWO-DOMAIN TRANSLATIONAL REGULATOR YIH1 REVEALS A REMARK 900 POSSIBLE MECHANISM OF ACTION DBREF 6BQI A 1 258 UNP P25637 YIH1_YEAST 1 258 SEQRES 1 A 258 MET ASP ASP ASP HIS GLU GLN LEU VAL GLU GLU LEU GLU SEQRES 2 A 258 ALA VAL GLU ALA ILE TYR PRO ASP LEU LEU SER LYS LYS SEQRES 3 A 258 GLN GLU ASP GLY SER ILE ILE VAL VAL LYS VAL PRO GLN SEQRES 4 A 258 HIS GLU TYR MET THR LEU GLN ILE SER PHE PRO THR HIS SEQRES 5 A 258 TYR PRO SER GLU GLU ALA PRO ASN VAL ILE GLU VAL GLY SEQRES 6 A 258 VAL CYS THR SER LEU ALA LYS ARG ASP LEU TYR ASP THR SEQRES 7 A 258 LYS TYR LEU GLN HIS LEU PHE GLN GLU VAL MET ASP SER SEQRES 8 A 258 VAL PHE HIS ARG GLY SER VAL CYS LEU PHE ASP PHE LEU SEQRES 9 A 258 THR GLU LEU ASP GLY VAL LEU TYR VAL GLU PRO GLU GLU SEQRES 10 A 258 GLU THR GLU PRO VAL GLN GLN SER ASP ILE PRO THR ASP SEQRES 11 A 258 PRO PHE GLU GLY TRP THR ALA SER ASP PRO ILE THR ASP SEQRES 12 A 258 ARG GLY SER THR PHE MET ALA PHE ALA ALA HIS VAL THR SEQRES 13 A 258 SER GLU GLU GLN ALA PHE ALA MET LEU ASP LEU LEU LYS SEQRES 14 A 258 THR ASP SER LYS MET ARG LYS ALA ASN HIS VAL MET SER SEQRES 15 A 258 ALA TRP ARG ILE LYS GLN ASP GLY SER ALA ALA THR TYR SEQRES 16 A 258 GLN ASP SER ASP ASP ASP GLY GLU THR ALA ALA GLY SER SEQRES 17 A 258 ARG MET LEU HIS LEU ILE THR ILE MET ASP VAL TRP ASN SEQRES 18 A 258 VAL ILE VAL VAL VAL ALA ARG TRP PHE GLY GLY ALA HIS SEQRES 19 A 258 ILE GLY PRO ASP ARG PHE LYS HIS ILE ASN SER THR ALA SEQRES 20 A 258 ARG GLU ALA VAL VAL ARG ALA GLY PHE ASP SER HELIX 1 AA1 ASP A 2 TYR A 19 1 18 HELIX 2 AA2 SER A 69 LEU A 75 5 7 HELIX 3 AA3 ASP A 77 SER A 91 1 15 HELIX 4 AA4 CYS A 99 LEU A 111 1 13 HELIX 5 AA5 SER A 157 THR A 170 1 14 HELIX 6 AA6 ASP A 171 LYS A 176 1 6 HELIX 7 AA7 GLU A 203 ASP A 218 1 16 HELIX 8 AA8 GLY A 236 ALA A 254 1 19 SHEET 1 AA1 4 LEU A 23 LYS A 25 0 SHEET 2 AA1 4 ILE A 33 LYS A 36 -1 O VAL A 34 N SER A 24 SHEET 3 AA1 4 MET A 43 SER A 48 -1 O LEU A 45 N VAL A 35 SHEET 4 AA1 4 ASN A 60 VAL A 66 -1 O GLU A 63 N GLN A 46 SHEET 1 AA2 4 THR A 136 THR A 142 0 SHEET 2 AA2 4 SER A 146 HIS A 154 -1 O PHE A 148 N ILE A 141 SHEET 3 AA2 4 VAL A 222 PHE A 230 -1 O ALA A 227 N MET A 149 SHEET 4 AA2 4 HIS A 179 ALA A 183 -1 N HIS A 179 O ARG A 228 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1