HEADER HYDROLASE 28-NOV-17 6BQM TITLE SECRETED SERINE PROTEASE VESC FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE VESC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-522; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: VC0395_A1254; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSF-CT KEYWDS VC1649, TRYPSIN-LIKE DOMAIN, IG-LIKE DOMAIN, CBM DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.PARK,K.V.KOROTKOV,J.R.DELAROSA,S.TURLEY,F.DIMAIO,W.G.J.HOL REVDAT 5 20-NOV-24 6BQM 1 REMARK REVDAT 4 04-OCT-23 6BQM 1 REMARK REVDAT 3 30-DEC-20 6BQM 1 JRNL REVDAT 2 04-DEC-19 6BQM 1 REMARK REVDAT 1 28-NOV-18 6BQM 0 JRNL AUTH C.S.RULE,Y.J.PARK,J.R.DELAROSA,S.TURLEY,W.G.J.HOL,S.MCCOLM, JRNL AUTH 2 C.GURA,F.DIMAIO,K.V.KOROTKOV,M.SANDKVIST JRNL TITL SUPPRESSOR MUTATIONS IN TYPE II SECRETION MUTANTS OF VIBRIO JRNL TITL 2 CHOLERAE: INACTIVATION OF THE VESC PROTEASE. JRNL REF MSPHERE V. 5 2020 JRNL REFN ESSN 2379-5042 JRNL PMID 33328352 JRNL DOI 10.1128/MSPHERE.01125-20 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3527 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.750 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3607 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3285 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4904 ; 1.704 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7527 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;33.317 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;12.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.290 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4220 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 881 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5312 107.3178 47.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.0693 REMARK 3 T33: 0.1256 T12: 0.0408 REMARK 3 T13: 0.1047 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.8456 L22: 1.9223 REMARK 3 L33: 4.1264 L12: 1.1224 REMARK 3 L13: -0.5899 L23: -0.3511 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: -0.1107 S13: 0.1437 REMARK 3 S21: 0.4932 S22: -0.0156 S23: 0.4515 REMARK 3 S31: -0.2886 S32: -0.4829 S33: -0.0750 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9118 98.8945 47.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.0570 REMARK 3 T33: 0.0277 T12: -0.0037 REMARK 3 T13: -0.0212 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.3108 L22: 4.0627 REMARK 3 L33: 2.1657 L12: -0.0968 REMARK 3 L13: -0.3842 L23: -0.5570 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: -0.1593 S13: -0.0915 REMARK 3 S21: 0.5966 S22: 0.0748 S23: -0.0793 REMARK 3 S31: 0.0262 S32: 0.0489 S33: -0.0234 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1982 87.1432 43.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1103 REMARK 3 T33: 0.1124 T12: -0.0232 REMARK 3 T13: -0.0160 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.6896 L22: 4.2755 REMARK 3 L33: 3.6496 L12: -0.9283 REMARK 3 L13: -1.5771 L23: 1.4113 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.2137 S13: -0.1328 REMARK 3 S21: 0.2221 S22: -0.0343 S23: 0.3695 REMARK 3 S31: 0.2377 S32: -0.5249 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1094 105.1005 35.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.0448 REMARK 3 T33: 0.0128 T12: -0.0075 REMARK 3 T13: -0.0252 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9050 L22: 2.1994 REMARK 3 L33: 2.3993 L12: 0.1489 REMARK 3 L13: 0.2900 L23: -0.5081 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.0389 S13: -0.0366 REMARK 3 S21: 0.3607 S22: -0.0424 S23: -0.1326 REMARK 3 S31: -0.1828 S32: 0.2048 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 58.4484 113.8518 26.2684 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0533 REMARK 3 T33: 0.0492 T12: -0.0280 REMARK 3 T13: -0.0090 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.9887 L22: 1.6516 REMARK 3 L33: 3.1640 L12: -0.1498 REMARK 3 L13: 0.5537 L23: -0.9417 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.1493 S13: 0.1184 REMARK 3 S21: 0.2044 S22: -0.0527 S23: -0.2159 REMARK 3 S31: -0.3178 S32: 0.3338 S33: 0.0688 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0407 97.5163 12.4167 REMARK 3 T TENSOR REMARK 3 T11: 0.0375 T22: 0.0457 REMARK 3 T33: 0.0362 T12: 0.0042 REMARK 3 T13: 0.0214 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.4544 L22: 2.5958 REMARK 3 L33: 2.8259 L12: -0.5438 REMARK 3 L13: -0.8916 L23: 0.1171 REMARK 3 S TENSOR REMARK 3 S11: -0.1846 S12: -0.2496 S13: -0.2949 REMARK 3 S21: 0.1390 S22: 0.0582 S23: 0.1637 REMARK 3 S31: 0.2674 S32: -0.1109 S33: 0.1264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : FLAT BENT COLLIMATING RH COATED REMARK 200 MIRROR, TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 BUILT=20131111 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 11, 2013 REMARK 200 BUILT=20131111 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 69.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.240 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.99 REMARK 200 R MERGE FOR SHELL (I) : 0.96900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4LK4, 1UXX, 2C9A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.2 M CALCIUM REMARK 280 CHLORIDE, 0.6 M SODIUM CHLORIDE, 25% PEG3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.82550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.55550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.70100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.55550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.82550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.70100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 THR A 25 REMARK 465 GLU A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ARG A 32 REMARK 465 ILE A 33 REMARK 465 ILE A 34 REMARK 465 LYS A 164 REMARK 465 GLU A 165 REMARK 465 VAL A 166 REMARK 465 ASP A 167 REMARK 465 GLY A 168 REMARK 465 GLU A 169 REMARK 465 LYS A 170 REMARK 465 SER A 171 REMARK 465 ASP A 172 REMARK 465 PHE A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 ASP A 219 REMARK 465 ALA A 220 REMARK 465 ASP A 247 REMARK 465 GLY A 248 REMARK 465 CYS A 249 REMARK 465 LEU A 512 REMARK 465 PRO A 513 REMARK 465 PRO A 514 REMARK 465 PRO A 515 REMARK 465 LEU A 516 REMARK 465 ASP A 517 REMARK 465 ILE A 518 REMARK 465 ARG A 519 REMARK 465 ILE A 520 REMARK 465 GLY A 521 REMARK 465 ASP A 522 REMARK 465 GLU A 523 REMARK 465 ASN A 524 REMARK 465 LEU A 525 REMARK 465 TYR A 526 REMARK 465 PHE A 527 REMARK 465 GLN A 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 GLN A 197 CG CD OE1 NE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 SER A 384 OG REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 682 O HOH A 702 2.03 REMARK 500 OD1 ASP A 142 OD2 ASP A 145 2.10 REMARK 500 O HOH A 608 O HOH A 690 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 699 O HOH A 701 1655 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 290 CB SER A 290 OG -0.080 REMARK 500 TYR A 375 CE1 TYR A 375 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 92 -79.36 -145.69 REMARK 500 ASP A 152 6.30 80.36 REMARK 500 SER A 222 -45.89 97.41 REMARK 500 ASN A 234 -22.83 72.70 REMARK 500 SER A 354 -159.32 -143.74 REMARK 500 ASN A 429 59.54 84.17 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6BQM A 23 522 UNP A0A0H3AHB9_VIBC3 DBREF2 6BQM A A0A0H3AHB9 23 522 SEQADV 6BQM ALA A 225 UNP A0A0H3AHB SER 225 ENGINEERED MUTATION SEQADV 6BQM GLU A 523 UNP A0A0H3AHB EXPRESSION TAG SEQADV 6BQM ASN A 524 UNP A0A0H3AHB EXPRESSION TAG SEQADV 6BQM LEU A 525 UNP A0A0H3AHB EXPRESSION TAG SEQADV 6BQM TYR A 526 UNP A0A0H3AHB EXPRESSION TAG SEQADV 6BQM PHE A 527 UNP A0A0H3AHB EXPRESSION TAG SEQADV 6BQM GLN A 528 UNP A0A0H3AHB EXPRESSION TAG SEQRES 1 A 506 SER GLY THR GLU SER GLY VAL SER SER ARG ILE ILE GLY SEQRES 2 A 506 GLY GLU GLN ALA THR ALA GLY GLU TRP PRO TYR MET VAL SEQRES 3 A 506 ALA LEU THR ALA ARG ASN SER SER HIS VAL PHE CYS GLY SEQRES 4 A 506 GLY SER TYR LEU GLY GLY ARG TYR VAL LEU THR ALA ALA SEQRES 5 A 506 HIS CYS VAL ASP LYS GLU ASP PRO ALA LYS GLY ASP VAL SEQRES 6 A 506 LEU LEU GLY ALA PHE ASP MET ASN ASP VAL ASN THR ALA SEQRES 7 A 506 GLU ARG ILE HIS VAL ARG GLN ILE TYR VAL HIS ASN SER SEQRES 8 A 506 TYR ILE THR ALA SER MET GLY ASN ASP ILE ALA VAL LEU SEQRES 9 A 506 GLU LEU GLU ARG ASP PRO LEU PRO ARG ARG SER VAL GLN SEQRES 10 A 506 ILE SER ASP SER SER ASP PHE ASN GLU LEU THR LYS ASP SEQRES 11 A 506 SER PRO MET THR VAL ILE GLY PHE GLY ASN ARG LYS GLU SEQRES 12 A 506 VAL ASP GLY GLU LYS SER ASP PRO ALA THR ILE LEU HIS SEQRES 13 A 506 GLN VAL GLN VAL PRO PHE VAL PRO LEU PRO GLU CYS LYS SEQRES 14 A 506 THR LYS GLY SER ASP GLN ASP ALA LYS ASN ASN TYR SER SEQRES 15 A 506 GLN LEU THR ASN ASN ALA PHE CYS ALA GLY SER PHE GLY SEQRES 16 A 506 LYS ASP ALA CYS SER GLY ASP ALA GLY GLY PRO ILE PHE SEQRES 17 A 506 PHE ASP SER ASN ASN GLY ARG LYS GLN MET GLY VAL VAL SEQRES 18 A 506 SER TRP GLY ASP GLY CYS GLY ARG ALA ASN SER PRO GLY SEQRES 19 A 506 VAL TYR THR ASN LEU SER VAL PHE ASN ASP TRP LEU ASP SEQRES 20 A 506 ASP GLN GLN LEU GLY LEU SER TYR ARG GLN LYS ARG ASP SEQRES 21 A 506 LEU GLY VAL VAL ARG PRO GLY SER TYR THR HIS ASN LEU SEQRES 22 A 506 THR PHE THR ASN ASN GLY ASN ALA ASP ILE ASN LEU GLY SEQRES 23 A 506 ASN THR PHE VAL PHE VAL VAL GLY ILE SER ARG THR ASP SEQRES 24 A 506 ALA ALA ALA ILE VAL ASN ASN SER CYS THR GLY VAL LEU SEQRES 25 A 506 ALA SER GLY ALA SER CYS ASP VAL GLU PHE SER TYR ASN SEQRES 26 A 506 ILE THR GLU HIS LYS GLN SER TYR VAL LYS LEU ILE ILE SEQRES 27 A 506 GLY SER SER THR TYR LYS THR GLY ALA VAL HIS ALA TYR SEQRES 28 A 506 LEU TYR PHE ASP ALA LEU ASP ALA ALA PRO SER GLU THR SEQRES 29 A 506 VAL SER PHE LEU ALA ASN LEU PRO VAL HIS ASN THR HIS SEQRES 30 A 506 VAL ASN ASP HIS PRO TRP THR VAL VAL GLY ASN GLY LEU SEQRES 31 A 506 GLN THR SER ALA LEU PRO ALA GLY GLU GLU SER VAL ILE SEQRES 32 A 506 LEU LEU GLU ASN LEU PRO GLN GLY ARG LEU LYS PHE HIS SEQRES 33 A 506 TYR LYS LEU SER SER SER GLU VAL LEU ASP GLN LEU PHE SEQRES 34 A 506 VAL TYR VAL ASN ASP LYS PHE LYS GLY LYS TYR PHE ASN SEQRES 35 A 506 ASN THR GLU ASN LEU ALA THR LEU ASP MET TYR GLY THR SEQRES 36 A 506 ASN ASN LYS VAL ARG PHE VAL TYR ARG ARG HIS SER GLY SEQRES 37 A 506 SER THR ASP ASP GLN SER ARG ALA ILE LEU SER GLN ILE SEQRES 38 A 506 SER TYR ASP PRO LYS PHE PHE ASP LEU PRO PRO PRO LEU SEQRES 39 A 506 ASP ILE ARG ILE GLY ASP GLU ASN LEU TYR PHE GLN FORMUL 2 HOH *124(H2 O) HELIX 1 AA1 ALA A 73 ASP A 78 1 6 HELIX 2 AA2 ASP A 81 ALA A 83 5 3 HELIX 3 AA3 THR A 116 GLY A 120 5 5 HELIX 4 AA4 ASP A 142 GLU A 148 1 7 HELIX 5 AA5 PRO A 186 LYS A 191 1 6 HELIX 6 AA6 ASP A 196 GLN A 205 1 10 HELIX 7 AA7 LEU A 261 VAL A 263 5 3 HELIX 8 AA8 PHE A 264 GLN A 272 1 9 HELIX 9 AA9 PRO A 383 LEU A 390 1 8 SHEET 1 AA1 8 GLY A 36 GLN A 38 0 SHEET 2 AA1 8 HIS A 178 VAL A 185 -1 O GLN A 179 N GLU A 37 SHEET 3 AA1 8 ALA A 210 ALA A 213 -1 O CYS A 212 N VAL A 185 SHEET 4 AA1 8 GLY A 256 THR A 259 -1 O TYR A 258 N PHE A 211 SHEET 5 AA1 8 ARG A 237 TRP A 245 -1 N TRP A 245 O VAL A 257 SHEET 6 AA1 8 PRO A 228 ASP A 232 -1 N PHE A 231 O LYS A 238 SHEET 7 AA1 8 PRO A 154 GLY A 159 -1 N THR A 156 O PHE A 230 SHEET 8 AA1 8 HIS A 178 VAL A 185 -1 O VAL A 182 N MET A 155 SHEET 1 AA2 7 MET A 47 ALA A 52 0 SHEET 2 AA2 7 VAL A 58 GLY A 66 -1 O CYS A 60 N LEU A 50 SHEET 3 AA2 7 TYR A 69 THR A 72 -1 O LEU A 71 N SER A 63 SHEET 4 AA2 7 ALA A 124 LEU A 128 -1 O LEU A 126 N VAL A 70 SHEET 5 AA2 7 GLU A 101 VAL A 110 -1 N ARG A 106 O GLU A 127 SHEET 6 AA2 7 GLY A 85 LEU A 89 -1 N VAL A 87 O ILE A 103 SHEET 7 AA2 7 MET A 47 ALA A 52 -1 N THR A 51 O ASP A 86 SHEET 1 AA3 4 LEU A 275 SER A 276 0 SHEET 2 AA3 4 GLY A 289 ASN A 299 -1 O THR A 298 N SER A 276 SHEET 3 AA3 4 SER A 339 ILE A 348 -1 O TYR A 346 N TYR A 291 SHEET 4 AA3 4 ALA A 322 ASN A 328 -1 N ALA A 322 O ASN A 347 SHEET 1 AA4 4 LYS A 280 VAL A 286 0 SHEET 2 AA4 4 ALA A 369 ALA A 378 1 O TYR A 375 N ARG A 281 SHEET 3 AA4 4 GLN A 353 GLY A 361 -1 N ILE A 360 O VAL A 370 SHEET 4 AA4 4 THR A 310 VAL A 314 -1 N PHE A 313 O LYS A 357 SHEET 1 AA5 2 ILE A 305 LEU A 307 0 SHEET 2 AA5 2 GLY A 332 LEU A 334 -1 O LEU A 334 N ILE A 305 SHEET 1 AA6 6 ASP A 380 ALA A 381 0 SHEET 2 AA6 6 ASN A 397 VAL A 400 -1 O VAL A 400 N ASP A 380 SHEET 3 AA6 6 GLU A 421 LEU A 430 -1 O GLU A 428 N ASN A 397 SHEET 4 AA6 6 ASN A 479 ARG A 487 -1 O VAL A 481 N LEU A 427 SHEET 5 AA6 6 GLN A 449 VAL A 454 -1 N TYR A 453 O ARG A 482 SHEET 6 AA6 6 LYS A 457 TYR A 462 -1 O LYS A 459 N VAL A 452 SHEET 1 AA7 5 THR A 406 VAL A 408 0 SHEET 2 AA7 5 GLY A 411 GLN A 413 -1 O GLN A 413 N THR A 406 SHEET 3 AA7 5 ARG A 497 ASP A 506 -1 O LEU A 500 N LEU A 412 SHEET 4 AA7 5 GLY A 433 SER A 442 -1 N HIS A 438 O SER A 501 SHEET 5 AA7 5 GLU A 467 MET A 474 -1 O MET A 474 N GLY A 433 SSBOND 1 CYS A 60 CYS A 76 1555 1555 2.03 SSBOND 2 CYS A 190 CYS A 212 1555 1555 2.00 SSBOND 3 CYS A 330 CYS A 340 1555 1555 2.05 CRYST1 41.651 83.402 123.111 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008123 0.00000