HEADER OXIDOREDUCTASE 29-NOV-17 6BQX TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DSBA IN COMPLEX WITH N-METHYL-1- TITLE 2 (4-PHENOXYPHENYL)METHANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DISULPHIDE CATALYSTS, THIOL OXIDASE, VIRULENCE FACTOR FOLDASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.HERAS,M.TOTSIKA,J.J.PAXMAN,G.WANG,M.J.SCANLON REVDAT 4 01-JAN-20 6BQX 1 REMARK REVDAT 3 08-AUG-18 6BQX 1 JRNL REVDAT 2 14-FEB-18 6BQX 1 JRNL REVDAT 1 27-DEC-17 6BQX 0 JRNL AUTH M.TOTSIKA,D.VAGENAS,J.J.PAXMAN,G.WANG,R.DHOUIB,P.SHARMA, JRNL AUTH 2 J.L.MARTIN,M.J.SCANLON,B.HERAS JRNL TITL INHIBITION OF DIVERSE DSBA ENZYMES IN MULTI-DSBA ENCODING JRNL TITL 2 PATHOGENS. JRNL REF ANTIOXID. REDOX SIGNAL. V. 29 653 2018 JRNL REFN ESSN 1557-7716 JRNL PMID 29237285 JRNL DOI 10.1089/ARS.2017.7104 REMARK 0 REMARK 0 ;THIS ENTRY 1ZET REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 ORIGINAL DATA IN 4WF5 , DETERMINED BY ADAMS, L.A., SHARMA, P., REMARK 0 MOHANTY, B., ILYICHOVA, O.V., MULCAIR, M.D., WILLIAMS, M.L., REMARK 0 GLEESON, E.C., TOTSIKA, M., DOAK, B.C., CARIA, S., RIMMER, K., REMARK 0 SHOULDICE, S.R., VAZIRANI, M., HEADEY, S.J., PLUMB, B.R., MARTIN, REMARK 0 J.L., HERAS, B., SIMPSON, J.S., SCANLON, M.J. REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.A.ADAMS,P.SHARMA,B.MOHANTY,O.V.ILYICHOVA,M.D.MULCAIR, REMARK 1 AUTH 2 M.L.WILLIAMS,E.C.GLEESON,M.TOTSIKA,B.C.DOAK,S.CARIA, REMARK 1 AUTH 3 K.RIMMER,J.HORNE,S.R.SHOULDICE,M.VAZIRANI,S.J.HEADEY, REMARK 1 AUTH 4 B.R.PLUMB,J.L.MARTIN,B.HERAS,J.S.SIMPSON,M.J.SCANLON REMARK 1 TITL APPLICATION OF FRAGMENT-BASED SCREENING TO THE DESIGN OF REMARK 1 TITL 2 INHIBITORS OF ESCHERICHIA COLI DSBA. REMARK 1 REF ANGEW. CHEM. INT. ED. ENGL. V. 54 2179 2015 REMARK 1 REFN ESSN 1521-3773 REMARK 1 PMID 25556635 REMARK 1 DOI 10.1002/ANIE.201410341 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 27019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2913 - 5.3065 0.89 1378 140 0.1724 0.2219 REMARK 3 2 5.3065 - 4.2155 0.92 1357 166 0.1367 0.1872 REMARK 3 3 4.2155 - 3.6837 0.91 1326 164 0.1423 0.2119 REMARK 3 4 3.6837 - 3.3474 0.90 1351 137 0.1621 0.2406 REMARK 3 5 3.3474 - 3.1077 0.90 1343 154 0.1735 0.2712 REMARK 3 6 3.1077 - 2.9246 0.89 1302 141 0.1850 0.2851 REMARK 3 7 2.9246 - 2.7783 0.88 1317 142 0.1985 0.2645 REMARK 3 8 2.7783 - 2.6574 0.88 1284 162 0.1871 0.2426 REMARK 3 9 2.6574 - 2.5552 0.87 1292 127 0.1915 0.2844 REMARK 3 10 2.5552 - 2.4670 0.86 1277 140 0.1898 0.2811 REMARK 3 11 2.4670 - 2.3899 0.86 1272 133 0.1947 0.2717 REMARK 3 12 2.3899 - 2.3216 0.86 1260 146 0.1949 0.2596 REMARK 3 13 2.3216 - 2.2605 0.85 1243 134 0.2281 0.3073 REMARK 3 14 2.2605 - 2.2054 0.85 1240 154 0.2159 0.2714 REMARK 3 15 2.2054 - 2.1553 0.84 1226 142 0.2075 0.2957 REMARK 3 16 2.1553 - 2.1094 0.84 1228 143 0.2279 0.2873 REMARK 3 17 2.1094 - 2.0672 0.85 1268 129 0.2578 0.2944 REMARK 3 18 2.0672 - 2.0282 0.82 1182 133 0.2312 0.2951 REMARK 3 19 2.0282 - 1.9920 0.78 1172 114 0.2476 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3034 REMARK 3 ANGLE : 0.853 4102 REMARK 3 CHIRALITY : 0.045 443 REMARK 3 PLANARITY : 0.005 533 REMARK 3 DIHEDRAL : 5.225 1802 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8783 -9.1956 0.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.2972 REMARK 3 T33: 0.2625 T12: -0.0728 REMARK 3 T13: 0.0349 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.2059 L22: 4.5290 REMARK 3 L33: 2.2075 L12: 0.4444 REMARK 3 L13: 1.4481 L23: 2.2491 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.2165 S13: -0.1911 REMARK 3 S21: -0.5540 S22: 0.1084 S23: -0.2191 REMARK 3 S31: -0.0989 S32: 0.2058 S33: -0.0918 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5413 -0.6149 16.8485 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.1648 REMARK 3 T33: 0.1959 T12: -0.0548 REMARK 3 T13: -0.0239 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.8032 L22: 2.2415 REMARK 3 L33: 3.2521 L12: 0.5799 REMARK 3 L13: 0.3363 L23: 0.5727 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.1145 S13: 0.0861 REMARK 3 S21: 0.0412 S22: 0.0208 S23: -0.2540 REMARK 3 S31: 0.0102 S32: 0.1634 S33: -0.0065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2981 -12.5794 -4.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.3631 T22: 0.3523 REMARK 3 T33: 0.2866 T12: -0.0545 REMARK 3 T13: -0.0417 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 0.8126 L22: 4.0817 REMARK 3 L33: 2.2723 L12: -1.1817 REMARK 3 L13: 0.0297 L23: 1.2793 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.4624 S13: -0.1267 REMARK 3 S21: -0.7806 S22: 0.2714 S23: 0.2688 REMARK 3 S31: -0.2062 S32: 0.1325 S33: -0.1126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3659 9.9908 18.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.7066 T22: 0.5849 REMARK 3 T33: 0.9629 T12: 0.1347 REMARK 3 T13: -0.1209 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.6565 L22: 1.9706 REMARK 3 L33: 5.1554 L12: -0.5626 REMARK 3 L13: 0.3721 L23: -0.6990 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: -0.2798 S13: 0.6628 REMARK 3 S21: 0.1183 S22: -0.0413 S23: 0.4101 REMARK 3 S31: -1.4268 S32: -0.6671 S33: -0.0107 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6110 -6.5045 21.5615 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.3614 REMARK 3 T33: 0.3152 T12: -0.0813 REMARK 3 T13: 0.0223 T23: -0.0544 REMARK 3 L TENSOR REMARK 3 L11: 2.1430 L22: 2.7209 REMARK 3 L33: 3.0129 L12: 0.5314 REMARK 3 L13: 1.1496 L23: 1.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.3086 S13: 0.3191 REMARK 3 S21: 0.1241 S22: -0.1427 S23: 0.2099 REMARK 3 S31: 0.0651 S32: -0.5325 S33: 0.0558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9273 -19.9958 15.0354 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2706 REMARK 3 T33: 0.2175 T12: -0.0722 REMARK 3 T13: 0.0174 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 3.8069 L22: 2.9416 REMARK 3 L33: 0.7907 L12: 0.1651 REMARK 3 L13: -0.4817 L23: -0.1582 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: -0.0857 S13: -0.2874 REMARK 3 S21: 0.0668 S22: -0.1854 S23: 0.0254 REMARK 3 S31: 0.0241 S32: 0.0110 S33: 0.0569 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2201 -4.2627 18.0055 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.4125 REMARK 3 T33: 0.3622 T12: 0.0436 REMARK 3 T13: 0.0208 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.1240 L22: 2.9950 REMARK 3 L33: 2.7668 L12: 1.0358 REMARK 3 L13: 0.8369 L23: 1.1694 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: -0.2263 S13: 0.4799 REMARK 3 S21: -0.3901 S22: -0.0214 S23: 0.3457 REMARK 3 S31: -0.5820 S32: -0.3339 S33: 0.1201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953732 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 4WF5 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 CUCL2, 100 MM SODIUM CACODYLATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.57500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.45050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.57500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.45050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 ALA B 1 REMARK 465 LYS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 49 OD1 ASP A 180 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 233 O HOH B 233 2555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -78.86 -106.24 REMARK 500 LYS A 98 -63.05 -95.87 REMARK 500 LYS B 7 -84.96 -107.35 REMARK 500 PRO B 51 -172.11 -69.02 REMARK 500 LYS B 98 -72.43 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9AG A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WF5 RELATED DB: PDB REMARK 900 APPLICATION OF FRAGMENT-BASED SCREENING TO THE DESIGN OF INHIBITORS REMARK 900 OF ESCHERICHIA COLI DSBA DBREF 6BQX A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6BQX B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET 9AG A 201 16 HETNAM 9AG N-METHYL-1-(4-PHENOXYPHENYL)METHANAMINE FORMUL 3 9AG C14 H15 N O FORMUL 4 HOH *230(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LYS B 49 1 9 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O TYR B 59 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.22 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.11 CISPEP 1 VAL A 150 PRO A 151 0 -2.08 CISPEP 2 VAL B 150 PRO B 151 0 -3.16 SITE 1 AC1 6 HIS A 32 PHE A 36 LEU A 40 PRO A 163 SITE 2 AC1 6 GLY B 65 HOH B 240 CRYST1 117.150 64.901 75.416 90.00 126.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008536 0.000000 0.006324 0.00000 SCALE2 0.000000 0.015408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016502 0.00000