HEADER OXIDOREDUCTASE 29-NOV-17 6BR4 TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DSBA IN COMPLEX WITH {N}-METHYL- TITLE 2 1-(3-THIOPHEN-2-YLPHENYL)METHANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DISULPHIDE CATALYSTS, THIOL OXIDASE, VIRULENCE FACTOR FOLDASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.HERAS,M.TOTSIKA,J.J.PAXMAN,G.WANG,M.J.SCANLON,J.L.MARTIN REVDAT 4 01-JAN-20 6BR4 1 REMARK REVDAT 3 08-AUG-18 6BR4 1 JRNL REVDAT 2 14-FEB-18 6BR4 1 JRNL REVDAT 1 27-DEC-17 6BR4 0 JRNL AUTH M.TOTSIKA,D.VAGENAS,J.J.PAXMAN,G.WANG,R.DHOUIB,P.SHARMA, JRNL AUTH 2 J.L.MARTIN,M.J.SCANLON,B.HERAS JRNL TITL INHIBITION OF DIVERSE DSBA ENZYMES IN MULTI-DSBA ENCODING JRNL TITL 2 PATHOGENS. JRNL REF ANTIOXID. REDOX SIGNAL. V. 29 653 2018 JRNL REFN ESSN 1557-7716 JRNL PMID 29237285 JRNL DOI 10.1089/ARS.2017.7104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.A.ADAMS,P.SHARMA,B.MOHANTY,O.V.ILYICHOVA,M.D.MULCAIR, REMARK 1 AUTH 2 M.L.WILLIAMS,E.C.GLEESON,M.TOTSIKA,B.C.DOAK,S.CARIA, REMARK 1 AUTH 3 K.RIMMER,J.HORNE,S.R.SHOULDICE,M.VAZIRANI,S.J.HEADEY, REMARK 1 AUTH 4 B.R.PLUMB,J.L.MARTIN,B.HERAS,J.S.SIMPSON,M.J.SCANLON REMARK 1 TITL APPLICATION OF FRAGMENT-BASED SCREENING TO THE DESIGN OF REMARK 1 TITL 2 INHIBITORS OF ESCHERICHIA COLI DSBA. REMARK 1 REF ANGEW. CHEM. INT. ED. ENGL. V. 54 2179 2015 REMARK 1 REFN ESSN 1521-3773 REMARK 1 PMID 25556635 REMARK 1 DOI 10.1002/ANIE.201410341 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.130 REMARK 3 FREE R VALUE TEST SET COUNT : 3020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.8588 - 5.5740 0.99 1290 136 0.1691 0.1869 REMARK 3 2 5.5740 - 4.4250 1.00 1254 146 0.1541 0.1713 REMARK 3 3 4.4250 - 3.8658 1.00 1233 156 0.1368 0.1870 REMARK 3 4 3.8658 - 3.5125 1.00 1262 131 0.1391 0.1750 REMARK 3 5 3.5125 - 3.2607 1.00 1240 138 0.1596 0.1886 REMARK 3 6 3.2607 - 3.0685 0.99 1235 144 0.1703 0.2245 REMARK 3 7 3.0685 - 2.9149 0.99 1230 140 0.1742 0.2522 REMARK 3 8 2.9149 - 2.7880 0.99 1227 125 0.1800 0.2473 REMARK 3 9 2.7880 - 2.6807 0.99 1234 143 0.1664 0.2437 REMARK 3 10 2.6807 - 2.5882 0.98 1222 134 0.1822 0.2342 REMARK 3 11 2.5882 - 2.5072 0.99 1246 120 0.1733 0.2460 REMARK 3 12 2.5072 - 2.4356 0.98 1219 142 0.1730 0.2675 REMARK 3 13 2.4356 - 2.3714 0.98 1184 135 0.1665 0.2291 REMARK 3 14 2.3714 - 2.3136 0.98 1213 143 0.1594 0.2060 REMARK 3 15 2.3136 - 2.2610 0.98 1223 139 0.1633 0.2210 REMARK 3 16 2.2610 - 2.2129 0.97 1190 133 0.1789 0.2285 REMARK 3 17 2.2129 - 2.1686 0.97 1190 157 0.1830 0.2351 REMARK 3 18 2.1686 - 2.1277 0.97 1175 143 0.1843 0.2261 REMARK 3 19 2.1277 - 2.0897 0.97 1209 133 0.1949 0.2406 REMARK 3 20 2.0897 - 2.0543 0.96 1194 124 0.2328 0.3384 REMARK 3 21 2.0543 - 2.0211 0.96 1195 125 0.3656 0.3947 REMARK 3 22 2.0211 - 1.9900 0.91 1115 133 0.4650 0.5497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3037 REMARK 3 ANGLE : 0.879 4107 REMARK 3 CHIRALITY : 0.045 444 REMARK 3 PLANARITY : 0.004 534 REMARK 3 DIHEDRAL : 5.264 1809 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6717 -12.7935 -13.4038 REMARK 3 T TENSOR REMARK 3 T11: 0.7137 T22: 0.3860 REMARK 3 T33: 0.3793 T12: 0.0847 REMARK 3 T13: -0.1984 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 1.2127 L22: 8.6202 REMARK 3 L33: 3.2686 L12: -0.4777 REMARK 3 L13: 1.1962 L23: 3.7744 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.5454 S13: 0.0235 REMARK 3 S21: -1.4636 S22: -0.2257 S23: 0.6100 REMARK 3 S31: -0.4386 S32: -0.1719 S33: -0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6652 -2.4707 -9.7211 REMARK 3 T TENSOR REMARK 3 T11: 0.6858 T22: 0.7737 REMARK 3 T33: 0.4359 T12: -0.2583 REMARK 3 T13: 0.1433 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 2.3746 L22: 3.4470 REMARK 3 L33: 3.9514 L12: 2.4949 REMARK 3 L13: -0.1794 L23: 1.3067 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.9778 S13: 0.2815 REMARK 3 S21: -1.3282 S22: 0.1334 S23: -0.4646 REMARK 3 S31: -0.3802 S32: 0.8994 S33: 0.0090 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6119 -9.2427 5.7755 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2939 REMARK 3 T33: 0.2584 T12: -0.0440 REMARK 3 T13: -0.0269 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.5014 L22: 4.3322 REMARK 3 L33: 2.5900 L12: 1.0970 REMARK 3 L13: 0.9397 L23: 0.7807 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: 0.1677 S13: -0.1703 REMARK 3 S21: -0.0604 S22: 0.0307 S23: -0.0868 REMARK 3 S31: 0.1494 S32: 0.1704 S33: -0.1564 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0176 -3.2190 15.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2342 REMARK 3 T33: 0.2494 T12: -0.0561 REMARK 3 T13: 0.0015 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.1816 L22: 0.6368 REMARK 3 L33: 2.5529 L12: -0.1042 REMARK 3 L13: 0.6078 L23: 0.1751 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.1429 S13: -0.1222 REMARK 3 S21: 0.0187 S22: 0.0207 S23: 0.0091 REMARK 3 S31: 0.0516 S32: 0.0152 S33: -0.0153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1125 -1.0086 24.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.2563 REMARK 3 T33: 0.2326 T12: -0.0635 REMARK 3 T13: 0.0051 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 3.5790 L22: 0.9374 REMARK 3 L33: 2.6523 L12: 0.9217 REMARK 3 L13: 1.5389 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.2592 S13: -0.0107 REMARK 3 S21: 0.1037 S22: -0.0060 S23: 0.1425 REMARK 3 S31: 0.1036 S32: -0.2064 S33: 0.0232 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7514 -0.7010 23.1381 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.3021 REMARK 3 T33: 0.2473 T12: -0.0022 REMARK 3 T13: -0.0182 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.7482 L22: 4.0260 REMARK 3 L33: 4.1513 L12: 2.5230 REMARK 3 L13: -0.9180 L23: -0.7351 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: -0.1518 S13: -0.0998 REMARK 3 S21: 0.1364 S22: 0.0401 S23: -0.4988 REMARK 3 S31: 0.0832 S32: 0.7092 S33: 0.0286 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5652 3.5000 5.1945 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.3805 REMARK 3 T33: 0.2929 T12: -0.1501 REMARK 3 T13: 0.0444 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.5798 L22: 1.2740 REMARK 3 L33: 3.3103 L12: 0.5356 REMARK 3 L13: 1.4917 L23: 0.3903 REMARK 3 S TENSOR REMARK 3 S11: -0.3479 S12: 0.6180 S13: 0.1436 REMARK 3 S21: -0.4483 S22: 0.3352 S23: -0.1389 REMARK 3 S31: -0.6308 S32: 0.8317 S33: 0.0406 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6040 -4.0854 -4.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.4461 T22: 0.4427 REMARK 3 T33: 0.2931 T12: -0.0852 REMARK 3 T13: -0.0220 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.3488 L22: 5.6817 REMARK 3 L33: 4.7593 L12: -0.2233 REMARK 3 L13: -0.6179 L23: 1.4845 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.6972 S13: 0.1836 REMARK 3 S21: -1.0404 S22: 0.1668 S23: -0.0687 REMARK 3 S31: -0.4225 S32: 0.0647 S33: -0.1717 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7440 -14.2345 -2.6616 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.3402 REMARK 3 T33: 0.7838 T12: 0.0630 REMARK 3 T13: -0.1614 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.0384 L22: 8.3162 REMARK 3 L33: 3.7780 L12: 5.0563 REMARK 3 L13: -2.9919 L23: -4.6279 REMARK 3 S TENSOR REMARK 3 S11: 0.1270 S12: 0.4868 S13: 0.1510 REMARK 3 S21: -0.7105 S22: 0.1848 S23: 1.7304 REMARK 3 S31: 0.0373 S32: -0.9023 S33: -0.1643 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7691 -17.9904 -4.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.3438 REMARK 3 T33: 0.3677 T12: 0.0640 REMARK 3 T13: -0.1240 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 3.2125 L22: 5.7625 REMARK 3 L33: 4.2208 L12: -0.0280 REMARK 3 L13: -1.0372 L23: 0.6563 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.2690 S13: -0.1676 REMARK 3 S21: -0.5781 S22: -0.0589 S23: 0.3689 REMARK 3 S31: 0.1263 S32: 0.1064 S33: -0.1161 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5780 10.0552 20.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.7631 T22: 0.4343 REMARK 3 T33: 0.6099 T12: 0.1902 REMARK 3 T13: 0.1797 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 2.3455 L22: 2.0749 REMARK 3 L33: 2.1524 L12: 1.4742 REMARK 3 L13: -0.3594 L23: 0.6823 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: 0.2831 S13: 0.5251 REMARK 3 S21: -0.4441 S22: 0.2789 S23: 0.3164 REMARK 3 S31: -1.5143 S32: -0.6831 S33: -0.1880 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8871 -6.6079 21.8556 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.2584 REMARK 3 T33: 0.3577 T12: -0.0430 REMARK 3 T13: 0.0218 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.0515 L22: 2.6065 REMARK 3 L33: 4.3477 L12: 0.3186 REMARK 3 L13: 0.4389 L23: 2.3317 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.0389 S13: 0.0885 REMARK 3 S21: 0.1193 S22: -0.0952 S23: 0.2070 REMARK 3 S31: -0.0618 S32: -0.3715 S33: -0.0931 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1574 -16.4416 10.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.2643 REMARK 3 T33: 0.2186 T12: -0.0240 REMARK 3 T13: -0.0451 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 6.2253 L22: 3.4682 REMARK 3 L33: 3.9421 L12: 0.0712 REMARK 3 L13: -1.8454 L23: 0.7495 REMARK 3 S TENSOR REMARK 3 S11: 0.1725 S12: 0.5321 S13: -0.0035 REMARK 3 S21: -0.3226 S22: -0.0534 S23: 0.1198 REMARK 3 S31: 0.1313 S32: -0.4903 S33: -0.1128 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4107 -21.8032 16.6879 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.3031 REMARK 3 T33: 0.3005 T12: -0.0526 REMARK 3 T13: -0.0072 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.2987 L22: 2.5274 REMARK 3 L33: 1.8061 L12: 1.0315 REMARK 3 L13: -2.3173 L23: -0.5138 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.2708 S13: -0.4728 REMARK 3 S21: 0.2059 S22: -0.1426 S23: -0.2614 REMARK 3 S31: 0.0468 S32: 0.1794 S33: 0.1350 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6242 -27.1374 12.1545 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.4553 REMARK 3 T33: 0.3239 T12: -0.1064 REMARK 3 T13: 0.0246 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 5.2055 L22: 4.0353 REMARK 3 L33: 5.2361 L12: 0.1883 REMARK 3 L13: 1.7771 L23: -0.4890 REMARK 3 S TENSOR REMARK 3 S11: -0.2199 S12: 0.3068 S13: -0.5782 REMARK 3 S21: -0.2166 S22: 0.0752 S23: 0.2275 REMARK 3 S31: 0.4181 S32: -0.4399 S33: 0.1208 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4743 -9.5675 8.3141 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.5032 REMARK 3 T33: 0.3534 T12: 0.0738 REMARK 3 T13: -0.0745 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 2.0327 L22: 9.3320 REMARK 3 L33: 2.3986 L12: 2.4019 REMARK 3 L13: -1.0654 L23: -1.9822 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.5014 S13: 0.5129 REMARK 3 S21: -0.4913 S22: 0.3353 S23: 1.2442 REMARK 3 S31: -0.3391 S32: -0.7740 S33: -0.1092 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2790 3.3066 15.7372 REMARK 3 T TENSOR REMARK 3 T11: 0.6016 T22: 0.3412 REMARK 3 T33: 0.5191 T12: 0.1043 REMARK 3 T13: 0.1382 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 5.0366 L22: 5.1697 REMARK 3 L33: 6.1105 L12: -1.9804 REMARK 3 L13: 0.4935 L23: 1.6171 REMARK 3 S TENSOR REMARK 3 S11: 0.4929 S12: 0.2418 S13: 1.0054 REMARK 3 S21: -0.6398 S22: -0.0740 S23: 0.3854 REMARK 3 S31: -1.6760 S32: -0.6109 S33: -0.3917 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0555 6.0621 26.5212 REMARK 3 T TENSOR REMARK 3 T11: 0.6681 T22: 0.3848 REMARK 3 T33: 0.6337 T12: -0.0659 REMARK 3 T13: 0.3201 T23: -0.0624 REMARK 3 L TENSOR REMARK 3 L11: 3.3189 L22: 5.9019 REMARK 3 L33: 4.0706 L12: -0.7378 REMARK 3 L13: -0.8526 L23: -4.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.1822 S12: -0.1340 S13: 0.0154 REMARK 3 S21: -0.7281 S22: -0.1403 S23: -0.8370 REMARK 3 S31: -0.1089 S32: 0.8599 S33: 0.2613 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2766 4.5581 29.9144 REMARK 3 T TENSOR REMARK 3 T11: 0.4830 T22: 0.2239 REMARK 3 T33: 0.4847 T12: 0.0195 REMARK 3 T13: 0.2194 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 4.0882 L22: 3.3321 REMARK 3 L33: 5.9199 L12: 1.3935 REMARK 3 L13: 1.1341 L23: -0.0734 REMARK 3 S TENSOR REMARK 3 S11: 0.4736 S12: -0.0696 S13: 0.8071 REMARK 3 S21: 0.0201 S22: -0.1455 S23: 0.1466 REMARK 3 S31: -0.4911 S32: -0.3750 S33: -0.2264 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 52.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.670 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 CUCL2, 100 MM SODIUM CACODYLATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.11200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.96850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.11200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.96850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 431 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 120 CD REMARK 480 GLN A 137 OE1 REMARK 480 GLN A 146 CD REMARK 480 ARG A 148 CD CZ REMARK 480 GLU B 13 CD REMARK 480 GLU B 52 CD REMARK 480 LYS B 140 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 120 O HOH A 301 1.86 REMARK 500 NZ LYS B 118 O HOH B 301 2.13 REMARK 500 O HOH A 368 O HOH A 433 2.16 REMARK 500 O HOH B 394 O HOH B 424 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -91.10 -103.70 REMARK 500 LYS B 7 -80.74 -96.97 REMARK 500 LYS B 98 -72.32 -104.14 REMARK 500 GLN B 146 61.45 37.53 REMARK 500 ASN B 156 15.51 58.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 4 OE2 REMARK 620 2 ASP B 44 OD2 82.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 GLU B 4 OE2 86.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 60L A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WF5 RELATED DB: PDB DBREF 6BR4 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6BR4 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET 60L A 201 14 HET CU B 201 1 HET CU B 202 1 HETNAM 60L ~{N}-METHYL-1-(3-THIOPHEN-2-YLPHENYL)METHANAMINE HETNAM CU COPPER (II) ION FORMUL 3 60L C12 H13 N S FORMUL 4 CU 2(CU 2+) FORMUL 6 HOH *291(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LYS B 48 1 8 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N VAL B 155 O TYR B 159 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N PHE B 25 O ALA B 152 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.16 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.09 LINK OE2 GLU B 4 CU CU B 202 1555 1555 2.46 LINK OD2 ASP B 44 CU CU B 201 1555 1555 2.64 LINK OE2 GLU B 4 CU CU B 201 1555 4556 2.58 LINK OD2 ASP B 44 CU CU B 202 1555 4546 1.98 CISPEP 1 VAL A 150 PRO A 151 0 -8.57 CISPEP 2 VAL B 150 PRO B 151 0 -7.25 SITE 1 AC1 7 HIS A 32 GLN A 35 GLN A 164 THR A 168 SITE 2 AC1 7 MET A 171 PHE A 174 GLY B 65 SITE 1 AC2 4 GLU B 4 HIS B 41 ASP B 44 HOH B 410 SITE 1 AC3 3 GLN B 2 GLU B 4 ASP B 44 CRYST1 116.224 63.937 74.510 90.00 126.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008604 0.000000 0.006285 0.00000 SCALE2 0.000000 0.015640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016620 0.00000