HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-NOV-17 6BRJ TITLE DDR1 BOUND TO VX-680 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN, RESIDUES 526-876; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1711 KEYWDS KINASE, INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.GEORGHIOU,M.A.SEELIGER REVDAT 6 25-OCT-23 6BRJ 1 REMARK REVDAT 5 12-APR-23 6BRJ 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQRES HELIX SHEET SITE REVDAT 5 3 1 ATOM REVDAT 4 23-MAR-22 6BRJ 1 REMARK REVDAT 3 06-NOV-19 6BRJ 1 REMARK REVDAT 2 19-JUN-19 6BRJ 1 JRNL REVDAT 1 05-DEC-18 6BRJ 0 JRNL AUTH S.M.HANSON,G.GEORGHIOU,M.K.THAKUR,W.T.MILLER,J.S.REST, JRNL AUTH 2 J.D.CHODERA,M.A.SEELIGER JRNL TITL WHAT MAKES A KINASE PROMISCUOUS FOR INHIBITORS? JRNL REF CELL CHEM BIOL V. 26 390 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30612951 JRNL DOI 10.1016/J.CHEMBIOL.2018.11.005 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1225 - 5.2437 1.00 1354 154 0.2038 0.2392 REMARK 3 2 5.2437 - 4.1628 1.00 1278 144 0.1594 0.1892 REMARK 3 3 4.1628 - 3.6368 1.00 1254 136 0.1600 0.1995 REMARK 3 4 3.6368 - 3.3044 1.00 1267 143 0.1734 0.1846 REMARK 3 5 3.3044 - 3.0676 1.00 1249 133 0.1764 0.2389 REMARK 3 6 3.0676 - 2.8867 1.00 1231 142 0.1977 0.2624 REMARK 3 7 2.8867 - 2.7422 1.00 1246 139 0.1827 0.2161 REMARK 3 8 2.7422 - 2.6228 1.00 1232 142 0.1928 0.2188 REMARK 3 9 2.6228 - 2.5219 1.00 1226 142 0.1962 0.2393 REMARK 3 10 2.5219 - 2.4348 1.00 1225 130 0.2056 0.2480 REMARK 3 11 2.4348 - 2.3587 1.00 1225 143 0.2214 0.2572 REMARK 3 12 2.3587 - 2.2913 0.99 1221 131 0.2191 0.2679 REMARK 3 13 2.2913 - 2.2310 0.91 1121 127 0.2465 0.3083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2235 REMARK 3 ANGLE : 1.042 3032 REMARK 3 CHIRALITY : 0.089 335 REMARK 3 PLANARITY : 0.004 388 REMARK 3 DIHEDRAL : 15.809 812 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 568 THROUGH 584 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7064 -7.1502 6.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.4643 T22: 0.3119 REMARK 3 T33: 0.3672 T12: -0.0436 REMARK 3 T13: -0.0344 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 5.2496 L22: 6.8117 REMARK 3 L33: 6.2335 L12: 1.0944 REMARK 3 L13: 1.7777 L23: 4.7193 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: -0.1453 S13: 0.0874 REMARK 3 S21: 0.6174 S22: -0.3239 S23: 0.3371 REMARK 3 S31: 0.4611 S32: -0.0917 S33: 0.2350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 585 THROUGH 625 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8553 -5.3741 6.2527 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.2359 REMARK 3 T33: 0.2355 T12: 0.0252 REMARK 3 T13: -0.0436 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 8.7846 L22: 5.6957 REMARK 3 L33: 5.2464 L12: -5.1764 REMARK 3 L13: -2.8404 L23: 1.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: -0.3438 S13: 0.0186 REMARK 3 S21: 0.1625 S22: 0.2648 S23: -0.2464 REMARK 3 S31: 0.0338 S32: 0.3803 S33: -0.0503 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 626 THROUGH 641 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0315 4.0961 3.5906 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.2771 REMARK 3 T33: 0.3387 T12: 0.0645 REMARK 3 T13: -0.0352 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 8.6235 L22: 5.8682 REMARK 3 L33: 3.0530 L12: -2.8379 REMARK 3 L13: -4.4173 L23: 3.3813 REMARK 3 S TENSOR REMARK 3 S11: -0.6302 S12: -0.1497 S13: 0.2533 REMARK 3 S21: 0.5796 S22: 0.3295 S23: 0.2106 REMARK 3 S31: 0.6735 S32: -0.0167 S33: 0.3353 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 642 THROUGH 745 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5468 4.1837 -8.3176 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.2217 REMARK 3 T33: 0.2491 T12: 0.0318 REMARK 3 T13: -0.0136 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.2947 L22: 1.4747 REMARK 3 L33: 2.3675 L12: 0.6196 REMARK 3 L13: -0.2795 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.1201 S13: -0.3169 REMARK 3 S21: 0.0362 S22: 0.0042 S23: 0.0226 REMARK 3 S31: 0.2281 S32: 0.0832 S33: 0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 746 THROUGH 769 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7686 14.2994 6.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.2634 T22: 0.3108 REMARK 3 T33: 0.1709 T12: -0.0399 REMARK 3 T13: 0.0153 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.8720 L22: 5.6391 REMARK 3 L33: 1.4577 L12: 0.7043 REMARK 3 L13: 1.3303 L23: 1.7218 REMARK 3 S TENSOR REMARK 3 S11: 0.1949 S12: -0.1511 S13: -0.0279 REMARK 3 S21: 0.5891 S22: -0.1182 S23: 0.0177 REMARK 3 S31: 0.3747 S32: -0.1082 S33: -0.0528 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 770 THROUGH 840 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4907 24.4983 -4.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.1873 REMARK 3 T33: 0.2194 T12: -0.0323 REMARK 3 T13: 0.0383 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.4981 L22: 3.3542 REMARK 3 L33: 3.1692 L12: 0.4772 REMARK 3 L13: -0.4562 L23: 1.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: -0.2023 S13: 0.3490 REMARK 3 S21: 0.1056 S22: 0.0039 S23: 0.1731 REMARK 3 S31: -0.2037 S32: 0.0849 S33: -0.0850 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 841 THROUGH 860 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5317 25.7901 -15.7292 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.2580 REMARK 3 T33: 0.2125 T12: 0.0040 REMARK 3 T13: 0.0179 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 7.0931 L22: 3.9334 REMARK 3 L33: 4.3798 L12: -0.7566 REMARK 3 L13: 0.7049 L23: 2.3084 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.4592 S13: 0.6017 REMARK 3 S21: -0.3796 S22: 0.0235 S23: 0.0371 REMARK 3 S31: -0.4369 S32: 0.0821 S33: -0.0606 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 861 THROUGH 876 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8790 14.5611 -23.8669 REMARK 3 T TENSOR REMARK 3 T11: 0.4307 T22: 0.3784 REMARK 3 T33: 0.2640 T12: 0.0443 REMARK 3 T13: -0.0338 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 8.7437 L22: 6.1933 REMARK 3 L33: 3.9381 L12: -1.3030 REMARK 3 L13: -5.8391 L23: 1.2395 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: 0.6892 S13: -0.2713 REMARK 3 S21: -0.8322 S22: -0.2842 S23: -0.1312 REMARK 3 S31: -0.2528 S32: -0.0311 S33: 0.1248 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.231 REMARK 200 RESOLUTION RANGE LOW (A) : 48.111 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350 AND 0.1 M BIS-TRIS PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.61850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.61850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 526 REMARK 465 ASN A 527 REMARK 465 SER A 528 REMARK 465 VAL A 529 REMARK 465 PRO A 530 REMARK 465 HIS A 531 REMARK 465 TYR A 532 REMARK 465 ALA A 533 REMARK 465 GLU A 534 REMARK 465 ALA A 535 REMARK 465 ASP A 536 REMARK 465 ILE A 537 REMARK 465 VAL A 538 REMARK 465 THR A 539 REMARK 465 LEU A 540 REMARK 465 GLN A 541 REMARK 465 GLY A 542 REMARK 465 VAL A 543 REMARK 465 THR A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 546 REMARK 465 ASN A 547 REMARK 465 THR A 548 REMARK 465 TYR A 549 REMARK 465 ALA A 550 REMARK 465 VAL A 551 REMARK 465 PRO A 552 REMARK 465 ALA A 553 REMARK 465 LEU A 554 REMARK 465 PRO A 555 REMARK 465 PRO A 556 REMARK 465 GLY A 557 REMARK 465 ALA A 558 REMARK 465 VAL A 559 REMARK 465 GLY A 560 REMARK 465 ASP A 561 REMARK 465 GLY A 562 REMARK 465 PRO A 563 REMARK 465 PRO A 564 REMARK 465 ARG A 565 REMARK 465 VAL A 566 REMARK 465 ASP A 567 REMARK 465 ASP A 593 REMARK 465 SER A 594 REMARK 465 PRO A 595 REMARK 465 GLN A 596 REMARK 465 ASP A 597 REMARK 465 LEU A 598 REMARK 465 VAL A 599 REMARK 465 SER A 600 REMARK 465 LEU A 601 REMARK 465 ASP A 602 REMARK 465 PHE A 603 REMARK 465 PRO A 604 REMARK 465 LEU A 605 REMARK 465 ASN A 606 REMARK 465 VAL A 607 REMARK 465 ARG A 608 REMARK 465 LYS A 609 REMARK 465 GLY A 610 REMARK 465 HIS A 611 REMARK 465 PRO A 612 REMARK 465 LYS A 684 REMARK 465 ALA A 685 REMARK 465 ALA A 686 REMARK 465 GLU A 687 REMARK 465 GLY A 688 REMARK 465 ALA A 689 REMARK 465 PRO A 690 REMARK 465 GLY A 691 REMARK 465 ASP A 692 REMARK 465 GLY A 693 REMARK 465 GLN A 694 REMARK 465 ALA A 695 REMARK 465 ALA A 696 REMARK 465 GLN A 697 REMARK 465 GLY A 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 572 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 574 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 576 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 GLN A 674 CG CD OE1 NE2 REMARK 470 GLN A 680 CG CD OE1 NE2 REMARK 470 GLU A 682 CG CD OE1 OE2 REMARK 470 GLU A 739 CG CD OE1 OE2 REMARK 470 LYS A 782 CD CE NZ REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 ARG A 825 NE CZ NH1 NH2 REMARK 470 GLN A 827 CG CD OE1 NE2 REMARK 470 ARG A 829 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 856 CG CD OE1 OE2 REMARK 470 VAL A 876 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 728 -9.43 76.50 REMARK 500 ASP A 729 49.59 -146.21 REMARK 500 GLU A 870 -63.57 -127.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VX6 A 901 DBREF 6BRJ A 526 876 UNP Q08345 DDR1_HUMAN 526 876 SEQRES 1 A 351 GLN ASN SER VAL PRO HIS TYR ALA GLU ALA ASP ILE VAL SEQRES 2 A 351 THR LEU GLN GLY VAL THR GLY GLY ASN THR TYR ALA VAL SEQRES 3 A 351 PRO ALA LEU PRO PRO GLY ALA VAL GLY ASP GLY PRO PRO SEQRES 4 A 351 ARG VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU SEQRES 5 A 351 LYS LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS SEQRES 6 A 351 GLU VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE SEQRES 7 A 351 PRO LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA SEQRES 8 A 351 VAL LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG SEQRES 9 A 351 ASN ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU SEQRES 10 A 351 LYS ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL SEQRES 11 A 351 GLN ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU SEQRES 12 A 351 ASN GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU SEQRES 13 A 351 GLU ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN SEQRES 14 A 351 ALA ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU SEQRES 15 A 351 HIS VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU SEQRES 16 A 351 ALA THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG SEQRES 17 A 351 ASN CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA SEQRES 18 A 351 ASP PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR SEQRES 19 A 351 TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP SEQRES 20 A 351 MET ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR SEQRES 21 A 351 ALA SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU SEQRES 22 A 351 VAL LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU SEQRES 23 A 351 THR ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE SEQRES 24 A 351 ARG ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO SEQRES 25 A 351 ALA CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS SEQRES 26 A 351 TRP SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN SEQRES 27 A 351 LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET VX6 A 901 33 HETNAM VX6 CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN- HETNAM 2 VX6 1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2- HETNAM 3 VX6 YLSULFANYL]-PHENYL}-AMIDE FORMUL 2 VX6 C23 H28 N8 O S FORMUL 3 HOH *104(H2 O) HELIX 1 AA1 PRO A 569 LEU A 573 5 5 HELIX 2 AA2 THR A 625 SER A 640 1 16 HELIX 3 AA3 ASP A 671 ALA A 678 1 8 HELIX 4 AA4 SER A 702 LEU A 723 1 22 HELIX 5 AA5 ALA A 731 ARG A 733 5 3 HELIX 6 AA6 GLU A 739 PHE A 741 5 3 HELIX 7 AA7 ARG A 752 TYR A 759 5 8 HELIX 8 AA8 PRO A 769 MET A 773 5 5 HELIX 9 AA9 ALA A 774 GLY A 781 1 8 HELIX 10 AB1 THR A 784 MET A 801 1 18 HELIX 11 AB2 THR A 812 ASP A 826 1 15 HELIX 12 AB3 PRO A 840 TRP A 851 1 12 HELIX 13 AB4 GLU A 854 ARG A 858 5 5 HELIX 14 AB5 PRO A 860 GLU A 870 1 11 HELIX 15 AB6 ASP A 871 THR A 875 5 5 SHEET 1 AA1 5 ARG A 574 GLU A 581 0 SHEET 2 AA1 5 GLY A 585 GLU A 591 -1 O GLU A 591 N ARG A 574 SHEET 3 AA1 5 VAL A 615 LEU A 620 -1 O VAL A 617 N HIS A 588 SHEET 4 AA1 5 CYS A 661 ASP A 665 -1 O THR A 664 N ALA A 616 SHEET 5 AA1 5 LEU A 650 CYS A 654 -1 N GLY A 652 O ILE A 663 SHEET 1 AA2 2 GLN A 680 LEU A 681 0 SHEET 2 AA2 2 THR A 700 ILE A 701 1 O ILE A 701 N GLN A 680 SHEET 1 AA3 2 CYS A 735 VAL A 737 0 SHEET 2 AA3 2 ILE A 743 ILE A 745 -1 O LYS A 744 N LEU A 736 CISPEP 1 ASP A 658 PRO A 659 0 -2.51 SITE 1 AC1 12 LEU A 579 ALA A 616 ASP A 665 TYR A 666 SITE 2 AC1 12 MET A 667 GLU A 668 GLY A 670 ASN A 734 SITE 3 AC1 12 LEU A 736 MET A 750 ARG A 752 HOH A1019 CRYST1 61.500 75.400 77.237 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012947 0.00000