HEADER DNA BINDING PROTEIN/DNA 02-DEC-17 6BSF TITLE HUMAN GR (418-507) IN COMPLEX WITH MONOMERIC DNA BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: GR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR3C1, GRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: GOLD; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS GLUCOCORTICOID RECEPTOR MONOMERIC BINDING SITE, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.PUFALL REVDAT 3 18-AUG-21 6BSF 1 SOURCE DBREF SEQADV REVDAT 2 27-NOV-19 6BSF 1 REMARK REVDAT 1 05-DEC-18 6BSF 0 JRNL AUTH M.A.PUFALL JRNL TITL GENERAL AND SEQUENCE-SPECIFIC ROLES FOR DNA IN JRNL TITL 2 GLUCOCORTICOID RECEPTOR DNA-BINDING STOICHIOMETRY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5314 - 4.1021 1.00 2858 156 0.1649 0.1915 REMARK 3 2 4.1021 - 3.2568 0.99 2696 143 0.2024 0.2222 REMARK 3 3 3.2568 - 2.8454 1.00 2714 120 0.2614 0.3139 REMARK 3 4 2.8454 - 2.5853 1.00 2638 156 0.2838 0.3274 REMARK 3 5 2.5853 - 2.4001 1.00 2649 140 0.3205 0.3466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1847 REMARK 3 ANGLE : 1.474 2615 REMARK 3 CHIRALITY : 0.064 288 REMARK 3 PLANARITY : 0.007 226 REMARK 3 DIHEDRAL : 19.936 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 419 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.9272 -73.2393 233.7511 REMARK 3 T TENSOR REMARK 3 T11: 0.8218 T22: 0.7631 REMARK 3 T33: 0.4928 T12: 0.0996 REMARK 3 T13: -0.0009 T23: 0.1172 REMARK 3 L TENSOR REMARK 3 L11: 4.8772 L22: 8.5977 REMARK 3 L33: 2.8903 L12: -1.8985 REMARK 3 L13: 2.5441 L23: -1.7233 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.8862 S13: 0.1548 REMARK 3 S21: 1.3346 S22: 0.4295 S23: 0.3776 REMARK 3 S31: 0.5957 S32: -0.7117 S33: -0.5280 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 450 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.4324 -69.1849 219.9544 REMARK 3 T TENSOR REMARK 3 T11: 0.4939 T22: 0.4964 REMARK 3 T33: 0.3627 T12: 0.0985 REMARK 3 T13: 0.0091 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 8.8433 L22: 7.8131 REMARK 3 L33: 9.2154 L12: 3.0401 REMARK 3 L13: 0.4342 L23: -2.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.1548 S12: -0.0035 S13: -0.5381 REMARK 3 S21: 0.4203 S22: -0.1480 S23: -0.4077 REMARK 3 S31: 0.6825 S32: 0.7693 S33: 0.4344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.7334 -69.1491 227.1599 REMARK 3 T TENSOR REMARK 3 T11: 0.5282 T22: 0.3522 REMARK 3 T33: 0.4273 T12: 0.1117 REMARK 3 T13: 0.0129 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 7.0673 L22: 8.3136 REMARK 3 L33: 9.6607 L12: 2.2959 REMARK 3 L13: -1.8312 L23: -2.3083 REMARK 3 S TENSOR REMARK 3 S11: 0.4087 S12: -0.0568 S13: 0.2330 REMARK 3 S21: 0.6836 S22: -0.0876 S23: -0.0190 REMARK 3 S31: -0.5449 S32: 0.0808 S33: -0.2190 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.2650 -92.8310 213.4318 REMARK 3 T TENSOR REMARK 3 T11: 2.2468 T22: 1.2534 REMARK 3 T33: 0.9522 T12: 0.1033 REMARK 3 T13: -0.3797 T23: -0.2986 REMARK 3 L TENSOR REMARK 3 L11: 5.1531 L22: 8.0150 REMARK 3 L33: 2.1984 L12: -2.5847 REMARK 3 L13: 2.2673 L23: -0.4867 REMARK 3 S TENSOR REMARK 3 S11: 1.3815 S12: 0.1983 S13: -2.2594 REMARK 3 S21: -0.1683 S22: 1.2470 S23: -1.3971 REMARK 3 S31: 3.9618 S32: -0.5634 S33: -2.4056 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.9377 -84.9452 237.6936 REMARK 3 T TENSOR REMARK 3 T11: 0.6109 T22: 0.5423 REMARK 3 T33: 0.5227 T12: -0.0585 REMARK 3 T13: -0.1000 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 6.7669 L22: 8.8984 REMARK 3 L33: 5.7545 L12: -0.1088 REMARK 3 L13: -0.5722 L23: -6.8415 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: -0.4771 S13: -0.2820 REMARK 3 S21: -0.0004 S22: 0.5770 S23: 0.4420 REMARK 3 S31: 0.9152 S32: -1.3371 S33: -0.6636 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.0685 -83.9986 243.4527 REMARK 3 T TENSOR REMARK 3 T11: 1.0341 T22: 0.9144 REMARK 3 T33: 0.6621 T12: -0.0242 REMARK 3 T13: -0.0495 T23: 0.2403 REMARK 3 L TENSOR REMARK 3 L11: 6.3643 L22: 6.2599 REMARK 3 L33: 5.9835 L12: -2.2902 REMARK 3 L13: 2.8875 L23: 2.2204 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.3485 S13: -0.6525 REMARK 3 S21: 0.2422 S22: 0.4822 S23: 0.8350 REMARK 3 S31: 0.3632 S32: -1.6299 S33: -0.4681 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.1080 -86.2178 217.1166 REMARK 3 T TENSOR REMARK 3 T11: 1.3000 T22: 0.9419 REMARK 3 T33: 0.6635 T12: -0.1367 REMARK 3 T13: -0.3231 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 7.6227 L22: 9.5699 REMARK 3 L33: 5.3653 L12: -3.9977 REMARK 3 L13: 4.1073 L23: -6.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.9231 S12: 1.0010 S13: -0.8563 REMARK 3 S21: -0.8155 S22: 0.4525 S23: 0.2807 REMARK 3 S31: 2.1112 S32: -1.3426 S33: -1.3864 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): -61.5826 -76.5316 196.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.6238 T22: 0.6294 REMARK 3 T33: 0.6769 T12: -0.0406 REMARK 3 T13: 0.0806 T23: -0.2499 REMARK 3 L TENSOR REMARK 3 L11: 0.1964 L22: 4.6984 REMARK 3 L33: 4.1849 L12: 0.2335 REMARK 3 L13: -0.5074 L23: 0.7373 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: 0.5515 S13: -0.8992 REMARK 3 S21: -1.0555 S22: 0.9530 S23: -1.3871 REMARK 3 S31: 0.5756 S32: 1.7915 S33: -0.6143 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 439 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.0147 -79.4382 202.6851 REMARK 3 T TENSOR REMARK 3 T11: 0.9062 T22: 0.4512 REMARK 3 T33: 0.7466 T12: -0.0053 REMARK 3 T13: 0.1030 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.0661 L22: 7.1287 REMARK 3 L33: 6.5377 L12: -4.6382 REMARK 3 L13: -2.5150 L23: 4.4320 REMARK 3 S TENSOR REMARK 3 S11: 0.3830 S12: -0.6425 S13: -1.3410 REMARK 3 S21: 0.6113 S22: -0.1373 S23: 0.3284 REMARK 3 S31: 1.0006 S32: 0.1207 S33: -0.2963 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -77.7675 -73.6310 209.5377 REMARK 3 T TENSOR REMARK 3 T11: 0.5694 T22: 1.0092 REMARK 3 T33: 0.8642 T12: -0.0659 REMARK 3 T13: -0.0189 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.6455 L22: 2.8583 REMARK 3 L33: 7.9132 L12: 1.8579 REMARK 3 L13: 3.4291 L23: 4.3595 REMARK 3 S TENSOR REMARK 3 S11: -1.0980 S12: -2.1195 S13: -0.4631 REMARK 3 S21: -0.8703 S22: 0.2748 S23: 2.9319 REMARK 3 S31: 0.4073 S32: -1.5263 S33: 0.7688 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.2637 -63.6218 211.4754 REMARK 3 T TENSOR REMARK 3 T11: 0.6427 T22: 0.3909 REMARK 3 T33: 0.5024 T12: 0.0889 REMARK 3 T13: -0.0304 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 9.5668 L22: 7.7444 REMARK 3 L33: 8.5055 L12: -4.0790 REMARK 3 L13: -5.0654 L23: 2.0710 REMARK 3 S TENSOR REMARK 3 S11: -0.2296 S12: -0.0696 S13: 0.5887 REMARK 3 S21: 0.0227 S22: 0.0154 S23: 0.0363 REMARK 3 S31: -1.1913 S32: 0.0591 S33: 0.1829 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.8794 -72.8044 209.9044 REMARK 3 T TENSOR REMARK 3 T11: 0.6332 T22: 0.7270 REMARK 3 T33: 0.6129 T12: 0.1398 REMARK 3 T13: -0.0807 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.6877 L22: 7.2084 REMARK 3 L33: 7.4487 L12: -1.1729 REMARK 3 L13: -1.3819 L23: 4.1266 REMARK 3 S TENSOR REMARK 3 S11: 0.2365 S12: -0.0894 S13: -0.7497 REMARK 3 S21: 0.8005 S22: 0.1652 S23: -0.9954 REMARK 3 S31: 0.4995 S32: 1.7354 S33: -0.4969 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 474 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.5506 -70.8606 200.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.4316 REMARK 3 T33: 0.4248 T12: -0.0876 REMARK 3 T13: 0.0202 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 7.8432 L22: 8.6004 REMARK 3 L33: 9.4510 L12: -5.2625 REMARK 3 L13: -1.1120 L23: -2.2676 REMARK 3 S TENSOR REMARK 3 S11: -0.3690 S12: 0.2683 S13: -0.0879 REMARK 3 S21: -0.8820 S22: 0.1844 S23: -0.2905 REMARK 3 S31: -0.8655 S32: 0.1159 S33: 0.2014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14303 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 33.528 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07266 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MES MONOHYDRATE PH 6.0 0.005 M REMARK 280 MAGNESIUM SULFATE HEPTAHYDRATE 5% W/V POLYETHYLENE GLYCOL 4,000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.17250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.85100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.95350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.85100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.17250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.95350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 415 REMARK 465 SER B 416 REMARK 465 ALA B 490 REMARK 465 ARG B 491 REMARK 465 LYS B 492 REMARK 465 THR B 493 REMARK 465 LYS B 494 REMARK 465 LYS B 495 REMARK 465 LYS B 496 REMARK 465 ILE B 497 REMARK 465 LYS B 498 REMARK 465 GLY B 499 REMARK 465 ILE B 500 REMARK 465 GLN B 501 REMARK 465 GLN B 502 REMARK 465 ALA B 503 REMARK 465 THR B 504 REMARK 465 THR B 505 REMARK 465 GLY A 414 REMARK 465 SER A 415 REMARK 465 HIS A 416 REMARK 465 ALA A 490 REMARK 465 ARG A 491 REMARK 465 LYS A 492 REMARK 465 THR A 493 REMARK 465 LYS A 494 REMARK 465 LYS A 495 REMARK 465 LYS A 496 REMARK 465 ILE A 497 REMARK 465 LYS A 498 REMARK 465 GLY A 499 REMARK 465 ILE A 500 REMARK 465 GLN A 501 REMARK 465 GLN A 502 REMARK 465 ALA A 503 REMARK 465 THR A 504 REMARK 465 THR A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 417 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 418 CG SD CE REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 DT C 0 O5' REMARK 470 MET A 417 CG SD CE REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H22 DG C 13 O2 DC D 4 1.55 REMARK 500 O2 DC C 10 H22 DG D 7 1.55 REMARK 500 O2 DC C 14 H22 DG D 3 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 3 O3' DA C 3 C3' -0.042 REMARK 500 DA C 5 O3' DA C 5 C3' -0.049 REMARK 500 DA C 12 O3' DA C 12 C3' -0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 15 O3' - P - OP2 ANGL. DEV. = 8.4 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 425 -7.07 78.32 REMARK 500 ARG B 460 31.93 -142.65 REMARK 500 ASP B 462 16.58 -156.65 REMARK 500 ARG B 469 -7.64 -56.59 REMARK 500 GLU A 427 82.31 -68.94 REMARK 500 ALA A 428 140.18 -30.23 REMARK 500 ASN A 454 43.80 -75.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 421 SG REMARK 620 2 CYS B 424 SG 110.0 REMARK 620 3 CYS B 438 SG 122.0 98.6 REMARK 620 4 CYS B 441 SG 101.3 120.6 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 457 SG REMARK 620 2 CYS B 463 SG 111.5 REMARK 620 3 CYS B 473 SG 110.9 107.6 REMARK 620 4 CYS B 476 SG 109.0 112.8 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 CYS A 424 SG 114.0 REMARK 620 3 CYS A 438 SG 120.6 100.2 REMARK 620 4 CYS A 441 SG 106.4 115.9 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 457 SG REMARK 620 2 CYS A 463 SG 103.9 REMARK 620 3 CYS A 473 SG 116.9 114.8 REMARK 620 4 CYS A 476 SG 108.2 107.1 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 DBREF 6BSF B 419 505 UNP P04150 GCR_HUMAN 419 505 DBREF 6BSF C 0 15 PDB 6BSF 6BSF 0 15 DBREF 6BSF D 1 16 PDB 6BSF 6BSF 1 16 DBREF 6BSF A 419 505 UNP P04150 GCR_HUMAN 419 505 SEQADV 6BSF GLY B 415 UNP P04150 EXPRESSION TAG SEQADV 6BSF SER B 416 UNP P04150 EXPRESSION TAG SEQADV 6BSF HIS B 417 UNP P04150 EXPRESSION TAG SEQADV 6BSF MET B 418 UNP P04150 EXPRESSION TAG SEQADV 6BSF GLY A 414 UNP P04150 EXPRESSION TAG SEQADV 6BSF SER A 415 UNP P04150 EXPRESSION TAG SEQADV 6BSF HIS A 416 UNP P04150 EXPRESSION TAG SEQADV 6BSF MET A 417 UNP P04150 EXPRESSION TAG SEQRES 1 B 91 GLY SER HIS MET LYS LEU CYS LEU VAL CYS SER ASP GLU SEQRES 2 B 91 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 B 91 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 B 91 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 B 91 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 B 91 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 B 91 THR LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR THR SEQRES 1 C 16 DT DG DC DA DA DA DT DG DT DA DC DT DA SEQRES 2 C 16 DG DC DT SEQRES 1 D 16 DA DA DG DC DT DA DG DT DA DC DA DT DT SEQRES 2 D 16 DT DG DC SEQRES 1 A 91 GLY SER HIS MET LYS LEU CYS LEU VAL CYS SER ASP GLU SEQRES 2 A 91 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER SEQRES 3 A 91 CYS LYS VAL PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 A 91 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 A 91 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG SEQRES 6 A 91 LYS CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS SEQRES 7 A 91 THR LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR THR HET ZN B 601 1 HET ZN B 602 1 HET ZN A 601 1 HET ZN A 602 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *13(H2 O) HELIX 1 AA1 CYS B 438 GLY B 451 1 14 HELIX 2 AA2 CYS B 473 GLY B 485 1 13 HELIX 3 AA3 CYS A 438 GLY A 451 1 14 HELIX 4 AA4 ILE A 468 ASN A 472 5 5 HELIX 5 AA5 CYS A 473 GLY A 485 1 13 SHEET 1 AA1 2 GLY B 430 HIS B 432 0 SHEET 2 AA1 2 VAL B 435 THR B 437 -1 O THR B 437 N GLY B 430 SHEET 1 AA2 2 CYS A 431 HIS A 432 0 SHEET 2 AA2 2 VAL A 435 LEU A 436 -1 O VAL A 435 N HIS A 432 LINK SG CYS B 421 ZN ZN B 601 1555 1555 2.41 LINK SG CYS B 424 ZN ZN B 601 1555 1555 2.33 LINK SG CYS B 438 ZN ZN B 601 1555 1555 2.45 LINK SG CYS B 441 ZN ZN B 601 1555 1555 2.21 LINK SG CYS B 457 ZN ZN B 602 1555 1555 2.29 LINK SG CYS B 463 ZN ZN B 602 1555 1555 2.27 LINK SG CYS B 473 ZN ZN B 602 1555 1555 2.40 LINK SG CYS B 476 ZN ZN B 602 1555 1555 2.41 LINK SG CYS A 421 ZN ZN A 602 1555 1555 2.49 LINK SG CYS A 424 ZN ZN A 602 1555 1555 2.28 LINK SG CYS A 438 ZN ZN A 602 1555 1555 2.23 LINK SG CYS A 441 ZN ZN A 602 1555 1555 2.29 LINK SG CYS A 457 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 463 ZN ZN A 601 1555 1555 2.29 LINK SG CYS A 473 ZN ZN A 601 1555 1555 2.43 LINK SG CYS A 476 ZN ZN A 601 1555 1555 2.45 SITE 1 AC1 4 CYS B 421 CYS B 424 CYS B 438 CYS B 441 SITE 1 AC2 4 CYS B 457 CYS B 463 CYS B 473 CYS B 476 SITE 1 AC3 4 CYS A 457 CYS A 463 CYS A 473 CYS A 476 SITE 1 AC4 4 CYS A 421 CYS A 424 CYS A 438 CYS A 441 CRYST1 38.345 87.907 103.702 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009643 0.00000