HEADER HYDROLASE 04-DEC-17 6BSR TITLE CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 4 (PBP4) FROM TITLE 2 ENTEROCOCCUS FAECALIS IN THE BENZYLPENICILLIN BOUND FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PBP4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN,PENICILLIN-BINDING TRANSPEPTIDASE COMPND 5 DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 GENE: PBP4, DRJ71_03440, FKY84_09230, KUB3007_C20250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENICILLIN BINDING PROTEIN, TRANSPEPTIDASE, BETA-LACTAM, ANTIBIOTIC, KEYWDS 2 HYDROLASE, BENZYLPENICILLIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.MOON,E.D.D'ANDREA,W.PETI,R.PAGE REVDAT 7 13-MAR-24 6BSR 1 SOURCE REVDAT 6 03-NOV-21 6BSR 1 COMPND SOURCE REMARK SEQRES REVDAT 6 2 1 HET HETNAM FORMUL LINK REVDAT 6 3 1 SITE ATOM REVDAT 5 11-DEC-19 6BSR 1 REMARK REVDAT 4 20-FEB-19 6BSR 1 REMARK REVDAT 3 26-DEC-18 6BSR 1 JRNL REVDAT 2 07-NOV-18 6BSR 1 JRNL REVDAT 1 31-OCT-18 6BSR 0 JRNL AUTH T.M.MOON,E.D.D'ANDREA,C.W.LEE,A.SOARES,J.JAKONCIC, JRNL AUTH 2 C.DESBONNET,M.GARCIA-SOLACHE,L.B.RICE,R.PAGE,W.PETI JRNL TITL THE STRUCTURES OF PENICILLIN-BINDING PROTEIN 4 (PBP4) AND JRNL TITL 2 PBP5 FROMENTEROCOCCIPROVIDE STRUCTURAL INSIGHTS INTO JRNL TITL 3 BETA-LACTAM RESISTANCE. JRNL REF J. BIOL. CHEM. V. 293 18574 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30355734 JRNL DOI 10.1074/JBC.RA118.006052 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.6482 - 5.4518 1.00 2590 135 0.2447 0.2355 REMARK 3 2 5.4518 - 4.3485 1.00 2554 125 0.1777 0.1874 REMARK 3 3 4.3485 - 3.8051 1.00 2548 130 0.1673 0.1974 REMARK 3 4 3.8051 - 3.4601 1.00 2508 148 0.1743 0.2080 REMARK 3 5 3.4601 - 3.2137 1.00 2539 126 0.1741 0.1837 REMARK 3 6 3.2137 - 3.0252 1.00 2487 147 0.1862 0.2279 REMARK 3 7 3.0252 - 2.8744 1.00 2509 145 0.2007 0.2402 REMARK 3 8 2.8744 - 2.7497 1.00 2514 144 0.2071 0.2462 REMARK 3 9 2.7497 - 2.6442 1.00 2516 146 0.2159 0.2285 REMARK 3 10 2.6442 - 2.5533 1.00 2503 144 0.2263 0.3060 REMARK 3 11 2.5533 - 2.4737 1.00 2492 124 0.2267 0.2407 REMARK 3 12 2.4737 - 2.4031 1.00 2516 138 0.2447 0.2548 REMARK 3 13 2.4031 - 2.3400 1.00 2483 126 0.2727 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3250 REMARK 3 ANGLE : 0.478 4396 REMARK 3 CHIRALITY : 0.041 498 REMARK 3 PLANARITY : 0.003 574 REMARK 3 DIHEDRAL : 13.505 1936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 17.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 18% PEG8000, 22% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.65300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.73450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.65300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.73450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 990 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 ILE A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 LEU A 29 REMARK 465 TYR A 30 REMARK 465 PHE A 31 REMARK 465 GLN A 32 REMARK 465 GLY A 33 REMARK 465 HIS A 34 REMARK 465 MET A 35 REMARK 465 SER A 36 REMARK 465 GLN A 37 REMARK 465 TRP A 38 REMARK 465 GLN A 39 REMARK 465 ALA A 40 REMARK 465 LYS A 41 REMARK 465 GLN A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 GLU A 46 REMARK 465 ALA A 47 REMARK 465 LYS A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 ALA A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 PHE A 54 REMARK 465 LEU A 55 REMARK 465 ASN A 56 REMARK 465 VAL A 57 REMARK 465 LEU A 58 REMARK 465 SER A 59 REMARK 465 LYS A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 PHE A 63 REMARK 465 ASP A 64 REMARK 465 LYS A 65 REMARK 465 LEU A 66 REMARK 465 PRO A 67 REMARK 465 SER A 68 REMARK 465 VAL A 69 REMARK 465 VAL A 70 REMARK 465 GLN A 71 REMARK 465 GLU A 72 REMARK 465 ALA A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 77 REMARK 465 ASN A 78 REMARK 465 GLY A 79 REMARK 465 TYR A 80 REMARK 465 ASP A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 SER A 84 REMARK 465 VAL A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 TYR A 89 REMARK 465 GLN A 90 REMARK 465 ALA A 91 REMARK 465 ILE A 92 REMARK 465 TYR A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 ILE A 96 REMARK 465 GLN A 97 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 GLY A 100 REMARK 465 VAL A 101 REMARK 465 LYS A 102 REMARK 465 ALA A 103 REMARK 465 SER A 104 REMARK 465 ASP A 105 REMARK 465 VAL A 106 REMARK 465 GLN A 107 REMARK 465 VAL A 108 REMARK 465 LYS A 109 REMARK 465 LYS A 110 REMARK 465 ALA A 111 REMARK 465 LYS A 112 REMARK 465 ASP A 113 REMARK 465 ASN A 114 REMARK 465 GLN A 115 REMARK 465 TYR A 116 REMARK 465 THR A 117 REMARK 465 PHE A 118 REMARK 465 THR A 119 REMARK 465 TYR A 120 REMARK 465 LYS A 121 REMARK 465 LEU A 122 REMARK 465 SER A 123 REMARK 465 MET A 124 REMARK 465 SER A 125 REMARK 465 THR A 126 REMARK 465 PRO A 127 REMARK 465 LEU A 128 REMARK 465 GLY A 129 REMARK 465 GLU A 130 REMARK 465 MET A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 LEU A 134 REMARK 465 SER A 135 REMARK 465 TYR A 136 REMARK 465 GLN A 137 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 ILE A 140 REMARK 465 ALA A 141 REMARK 465 LYS A 142 REMARK 465 LYS A 143 REMARK 465 GLY A 144 REMARK 465 ASP A 145 REMARK 465 THR A 146 REMARK 465 TYR A 147 REMARK 465 GLN A 148 REMARK 465 ILE A 149 REMARK 465 ALA A 150 REMARK 465 TRP A 151 REMARK 465 LYS A 152 REMARK 465 PRO A 153 REMARK 465 SER A 154 REMARK 465 LEU A 155 REMARK 465 ILE A 156 REMARK 465 PHE A 157 REMARK 465 PRO A 158 REMARK 465 ASP A 159 REMARK 465 MET A 160 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 ASN A 163 REMARK 465 ASP A 164 REMARK 465 LYS A 165 REMARK 465 ILE A 166 REMARK 465 SER A 167 REMARK 465 ILE A 168 REMARK 465 GLN A 169 REMARK 465 VAL A 170 REMARK 465 ASP A 171 REMARK 465 ASN A 172 REMARK 465 GLY A 196 REMARK 465 VAL A 197 REMARK 465 VAL A 198 REMARK 465 PRO A 199 REMARK 465 GLY A 200 REMARK 465 LYS A 201 REMARK 465 LEU A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 ALA A 206 REMARK 465 GLU A 207 REMARK 465 LYS A 208 REMARK 465 THR A 209 REMARK 465 ALA A 210 REMARK 465 ASN A 211 REMARK 465 ILE A 212 REMARK 465 LYS A 213 REMARK 465 ALA A 214 REMARK 465 PHE A 215 REMARK 465 SER A 216 REMARK 465 ASP A 217 REMARK 465 LYS A 218 REMARK 465 PHE A 219 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 ASP A 224 REMARK 465 GLU A 225 REMARK 465 ILE A 226 REMARK 465 ASN A 227 REMARK 465 GLN A 228 REMARK 465 LYS A 229 REMARK 465 LEU A 230 REMARK 465 SER A 231 REMARK 465 GLN A 232 REMARK 465 GLY A 233 REMARK 465 TRP A 234 REMARK 465 VAL A 235 REMARK 465 GLN A 236 REMARK 465 ALA A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 SER A 247 REMARK 465 GLU A 248 REMARK 465 PRO A 249 REMARK 465 VAL A 250 REMARK 465 THR A 251 REMARK 465 GLU A 252 REMARK 465 LEU A 253 REMARK 465 PRO A 254 REMARK 465 THR A 255 REMARK 465 GLY A 256 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 PRO A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 SER A 296 REMARK 465 THR A 297 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 LEU A 321 REMARK 465 VAL A 322 REMARK 465 ILE A 323 REMARK 465 LEU A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 LYS A 327 REMARK 465 GLU A 328 REMARK 465 ASN A 329 REMARK 465 VAL A 330 REMARK 465 LYS A 331 REMARK 465 LYS A 332 REMARK 465 ALA A 333 REMARK 465 LEU A 334 REMARK 465 GLN A 335 REMARK 465 THR A 336 REMARK 465 LYS A 337 REMARK 465 GLU A 338 REMARK 465 LYS A 339 REMARK 465 ASP A 627 REMARK 465 LYS A 628 REMARK 465 GLN A 629 REMARK 465 ASP A 630 REMARK 465 THR A 631 REMARK 465 ASP A 632 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 VAL A 241 CG1 CG2 REMARK 470 ILE A 243 CG1 CG2 CD1 REMARK 470 THR A 259 OG1 CG2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ILE A 288 CG1 CG2 CD1 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 ASN A 291 CG OD1 ND2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLN A 343 CG CD OE1 NE2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 GLU A 624 CG CD OE1 OE2 REMARK 470 ILE A 625 CG1 CG2 CD1 REMARK 470 LYS A 626 CG CD CE NZ REMARK 470 LYS A 634 CG CD CE NZ REMARK 470 GLU A 660 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 462 OD1 ASP A 537 2.09 REMARK 500 O HOH A 801 O HOH A 992 2.16 REMARK 500 O HOH A 992 O HOH A 1081 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 243 -75.74 -116.24 REMARK 500 LYS A 290 62.67 -100.16 REMARK 500 SER A 386 -165.70 -129.54 REMARK 500 LEU A 410 76.91 56.22 REMARK 500 ASP A 456 -168.94 -161.11 REMARK 500 ILE A 507 33.23 -94.71 REMARK 500 PRO A 515 34.06 -75.57 REMARK 500 SER A 531 125.25 -171.88 REMARK 500 GLN A 542 -132.64 -98.67 REMARK 500 THR A 678 -73.00 -94.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1170 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1171 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1172 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1173 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1174 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1175 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A1176 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A1177 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH A1178 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A1179 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH A1180 DISTANCE = 9.21 ANGSTROMS REMARK 525 HOH A1181 DISTANCE = 9.54 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 9.90 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 10.32 ANGSTROMS REMARK 525 HOH A1184 DISTANCE = 10.77 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 10.97 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 12.98 ANGSTROMS REMARK 525 HOH A1187 DISTANCE = 13.03 ANGSTROMS REMARK 525 HOH A1188 DISTANCE = 13.19 ANGSTROMS REMARK 525 HOH A1189 DISTANCE = 14.52 ANGSTROMS REMARK 525 HOH A1190 DISTANCE = 15.08 ANGSTROMS REMARK 525 HOH A1191 DISTANCE = 15.41 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BSQ RELATED DB: PDB REMARK 900 6BSQ IS THE SAME PROTEIN, BUT IN THE APO STATE DBREF 6BSR A 36 680 UNP Q9K3C9 Q9K3C9_ENTFL 36 680 SEQADV 6BSR MET A 15 UNP Q9K3C9 INITIATING METHIONINE SEQADV 6BSR GLY A 16 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR SER A 17 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR ASP A 18 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR LYS A 19 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR ILE A 20 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 21 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 22 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 23 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 24 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 25 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 26 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR GLU A 27 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR ASN A 28 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR LEU A 29 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR TYR A 30 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR PHE A 31 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR GLN A 32 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR GLY A 33 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR HIS A 34 UNP Q9K3C9 EXPRESSION TAG SEQADV 6BSR MET A 35 UNP Q9K3C9 EXPRESSION TAG SEQRES 1 A 666 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 666 ASN LEU TYR PHE GLN GLY HIS MET SER GLN TRP GLN ALA SEQRES 3 A 666 LYS GLN GLU LEU ALA GLU ALA LYS LYS THR ALA THR THR SEQRES 4 A 666 PHE LEU ASN VAL LEU SER LYS GLN GLU PHE ASP LYS LEU SEQRES 5 A 666 PRO SER VAL VAL GLN GLU ALA SER LEU LYS LYS ASN GLY SEQRES 6 A 666 TYR ASP THR LYS SER VAL VAL GLU LYS TYR GLN ALA ILE SEQRES 7 A 666 TYR SER GLY ILE GLN ALA GLU GLY VAL LYS ALA SER ASP SEQRES 8 A 666 VAL GLN VAL LYS LYS ALA LYS ASP ASN GLN TYR THR PHE SEQRES 9 A 666 THR TYR LYS LEU SER MET SER THR PRO LEU GLY GLU MET SEQRES 10 A 666 LYS ASP LEU SER TYR GLN SER SER ILE ALA LYS LYS GLY SEQRES 11 A 666 ASP THR TYR GLN ILE ALA TRP LYS PRO SER LEU ILE PHE SEQRES 12 A 666 PRO ASP MET SER GLY ASN ASP LYS ILE SER ILE GLN VAL SEQRES 13 A 666 ASP ASN ALA LYS ARG GLY GLU ILE VAL ASP ARG ASN GLY SEQRES 14 A 666 SER GLY LEU ALA ILE ASN LYS VAL PHE ASP GLU VAL GLY SEQRES 15 A 666 VAL VAL PRO GLY LYS LEU GLY SER GLY ALA GLU LYS THR SEQRES 16 A 666 ALA ASN ILE LYS ALA PHE SER ASP LYS PHE GLY VAL SER SEQRES 17 A 666 VAL ASP GLU ILE ASN GLN LYS LEU SER GLN GLY TRP VAL SEQRES 18 A 666 GLN ALA ASP SER PHE VAL PRO ILE THR VAL ALA SER GLU SEQRES 19 A 666 PRO VAL THR GLU LEU PRO THR GLY ALA ALA THR LYS ASP SEQRES 20 A 666 THR GLU SER ARG TYR TYR PRO LEU GLY GLU ALA ALA ALA SEQRES 21 A 666 GLN LEU ILE GLY TYR THR GLY THR ILE THR ALA GLU ASP SEQRES 22 A 666 ILE GLU LYS ASN PRO GLU LEU SER SER THR GLY VAL ILE SEQRES 23 A 666 GLY LYS THR GLY LEU GLU ARG ALA PHE ASP LYS GLU LEU SEQRES 24 A 666 ARG GLY GLN ASP GLY GLY SER LEU VAL ILE LEU ASP ASP SEQRES 25 A 666 LYS GLU ASN VAL LYS LYS ALA LEU GLN THR LYS GLU LYS SEQRES 26 A 666 LYS ASP GLY GLN THR ILE LYS LEU THR ILE ASP SER GLY SEQRES 27 A 666 VAL GLN GLN GLN ALA PHE ALA ILE PHE ASP LYS ARG PRO SEQRES 28 A 666 GLY SER ALA VAL ILE THR ASP PRO GLN LYS GLY ASP LEU SEQRES 29 A 666 LEU ALA THR VAL SER SER PRO SER TYR ASP PRO ASN LYS SEQRES 30 A 666 MET ALA ASN GLY ILE SER GLN LYS GLU TYR ASP ALA TYR SEQRES 31 A 666 ASN ASN ASN LYS ASP LEU PRO PHE THR ALA ARG PHE ALA SEQRES 32 A 666 THR GLY TYR ALA PRO GLY SER THR PHE LYS THR ILE THR SEQRES 33 A 666 GLY ALA ILE GLY LEU ASP ALA GLY THR LEU LYS PRO ASP SEQRES 34 A 666 GLU GLU LEU GLU ILE ASN GLY LEU LYS TRP GLN LYS ASP SEQRES 35 A 666 LYS SER TRP GLY GLY TYR PHE ALA THR ARG VAL LYS GLU SEQRES 36 A 666 ALA SER PRO VAL ASN LEU ARG THR ALA LEU VAL ASN SER SEQRES 37 A 666 ASP ASN ILE TYR PHE ALA GLN GLN THR LEU ARG MET GLY SEQRES 38 A 666 GLU ASP LYS PHE ARG ALA GLY LEU ASN LYS PHE ILE PHE SEQRES 39 A 666 GLY GLU GLU LEU ASP LEU PRO ILE ALA MET THR PRO ALA SEQRES 40 A 666 GLN ILE SER ASN GLU ASP LYS PHE ASN SER GLU ILE LEU SEQRES 41 A 666 LEU ALA ASP THR GLY TYR GLY GLN GLY GLN LEU LEU ILE SEQRES 42 A 666 SER PRO ILE GLN GLN ALA THR MET TYR SER VAL PHE GLN SEQRES 43 A 666 ASN ASN GLY THR LEU VAL TYR PRO LYS LEU VAL LEU ASP SEQRES 44 A 666 LYS GLU THR LYS LYS LYS ASP ASN VAL ILE SER ALA ASN SEQRES 45 A 666 ALA ALA ASN THR ILE ALA THR ASP LEU LEU GLY SER VAL SEQRES 46 A 666 GLU ASP PRO SER GLY TYR VAL TYR ASN MET TYR ASN PRO SEQRES 47 A 666 ASN PHE SER LEU ALA ALA LYS THR GLY THR ALA GLU ILE SEQRES 48 A 666 LYS ASP LYS GLN ASP THR ASP GLY LYS GLU ASN SER PHE SEQRES 49 A 666 LEU LEU THR LEU ASP ARG SER ASN ASN LYS PHE LEU THR SEQRES 50 A 666 MET ILE MET VAL GLU ASN SER GLY GLU ASN GLY SER ALA SEQRES 51 A 666 THR ASP ILE SER LYS PRO LEU ILE ASP TYR LEU GLU ALA SEQRES 52 A 666 THR ILE LYS HET GOL A 701 6 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET CL A 706 1 HET CL A 707 1 HET PEG A 708 7 HET PNM A 709 23 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PNM OPEN FORM - PENICILLIN G HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 CL 2(CL 1-) FORMUL 9 PEG C4 H10 O3 FORMUL 10 PNM C16 H20 N2 O4 S FORMUL 11 HOH *391(H2 O) HELIX 1 AA1 LEU A 269 ALA A 272 5 4 HELIX 2 AA2 ALA A 273 GLY A 278 1 6 HELIX 3 AA3 GLU A 286 ASN A 291 5 6 HELIX 4 AA4 THR A 303 PHE A 309 1 7 HELIX 5 AA5 PHE A 309 GLY A 315 1 7 HELIX 6 AA6 ASP A 350 ILE A 360 1 11 HELIX 7 AA7 ASP A 388 GLY A 395 1 8 HELIX 8 AA8 SER A 397 ASN A 406 1 10 HELIX 9 AA9 ALA A 414 THR A 418 5 5 HELIX 10 AB1 PRO A 422 THR A 425 5 4 HELIX 11 AB2 PHE A 426 GLY A 438 1 13 HELIX 12 AB3 ASP A 456 GLY A 460 5 5 HELIX 13 AB4 ASN A 474 SER A 482 1 9 HELIX 14 AB5 ASP A 483 ASN A 504 1 22 HELIX 15 AB6 SER A 531 TYR A 540 1 10 HELIX 16 AB7 SER A 548 TYR A 556 1 9 HELIX 17 AB8 SER A 557 ASN A 561 5 5 HELIX 18 AB9 SER A 584 LEU A 595 1 12 HELIX 19 AC1 LEU A 596 ASP A 601 1 6 HELIX 20 AC2 VAL A 606 TYR A 610 5 5 HELIX 21 AC3 ASN A 657 GLY A 662 1 6 HELIX 22 AC4 SER A 668 THR A 678 1 11 SHEET 1 AA1 3 THR A 244 ALA A 246 0 SHEET 2 AA1 3 GLY A 185 VAL A 195 -1 N ASP A 193 O ALA A 246 SHEET 3 AA1 3 LYS A 260 TYR A 266 -1 O TYR A 266 N ILE A 188 SHEET 1 AA2 4 THR A 244 ALA A 246 0 SHEET 2 AA2 4 GLY A 185 VAL A 195 -1 N ASP A 193 O ALA A 246 SHEET 3 AA2 4 ILE A 178 VAL A 179 -1 N ILE A 178 O LEU A 186 SHEET 4 AA2 4 ILE A 345 LYS A 346 1 O ILE A 345 N VAL A 179 SHEET 1 AA3 2 THR A 280 THR A 282 0 SHEET 2 AA3 2 VAL A 299 GLY A 301 -1 O ILE A 300 N GLY A 281 SHEET 1 AA4 5 LEU A 378 SER A 384 0 SHEET 2 AA4 5 GLY A 366 THR A 371 -1 N GLY A 366 O SER A 384 SHEET 3 AA4 5 LEU A 650 VAL A 655 -1 O MET A 654 N SER A 367 SHEET 4 AA4 5 LYS A 634 ASP A 643 -1 N LEU A 639 O ILE A 653 SHEET 5 AA4 5 LEU A 616 ILE A 625 -1 N ALA A 617 O LEU A 642 SHEET 1 AA5 2 LYS A 452 TRP A 453 0 SHEET 2 AA5 2 ALA A 464 THR A 465 -1 O ALA A 464 N TRP A 453 SHEET 1 AA6 2 LEU A 565 VAL A 566 0 SHEET 2 AA6 2 LYS A 578 LYS A 579 -1 O LYS A 579 N LEU A 565 LINK OG SER A 424 C7 PNM A 709 1555 1555 1.40 CISPEP 1 SER A 384 PRO A 385 0 -0.33 CISPEP 2 SER A 471 PRO A 472 0 -0.05 CRYST1 123.306 85.469 83.685 90.00 109.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008110 0.000000 0.002865 0.00000 SCALE2 0.000000 0.011700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012673 0.00000