HEADER TRANSFERASE 04-DEC-17 6BSV TITLE CRYSTAL STRUCTURE OF XYLOGLUCAN XYLOSYLTRANSFERASE BINARY FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOGLUCAN 6-XYLOSYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATXT1; COMPND 5 EC: 2.4.2.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: XXT1, XT1, AT3G62720, F26K9_150; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS XYLOGLUCAN, XYLOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ZABOTINA,A.T.CULBERTSON,J.J.EHRLICH,J.CHOE,R.B.HONZATKO REVDAT 4 23-MAR-22 6BSV 1 REMARK LINK REVDAT 3 20-JUN-18 6BSV 1 JRNL REVDAT 2 06-JUN-18 6BSV 1 JRNL REVDAT 1 23-MAY-18 6BSV 0 JRNL AUTH A.T.CULBERTSON,J.J.EHRLICH,J.Y.CHOE,R.B.HONZATKO, JRNL AUTH 2 O.A.ZABOTINA JRNL TITL STRUCTURE OF XYLOGLUCAN XYLOSYLTRANSFERASE 1 REVEALS SIMPLE JRNL TITL 2 STERIC RULES THAT DEFINE BIOLOGICAL PATTERNS OF XYLOGLUCAN JRNL TITL 3 POLYMERS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 6064 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29784804 JRNL DOI 10.1073/PNAS.1801105115 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 32041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3350 - 5.8602 1.00 2456 164 0.1682 0.1934 REMARK 3 2 5.8602 - 4.6526 1.00 2331 156 0.1495 0.1709 REMARK 3 3 4.6526 - 4.0649 1.00 2310 153 0.1357 0.1598 REMARK 3 4 4.0649 - 3.6933 1.00 2286 151 0.1669 0.1913 REMARK 3 5 3.6933 - 3.4287 0.99 2265 151 0.1889 0.2475 REMARK 3 6 3.4287 - 3.2266 0.99 2265 151 0.2037 0.2348 REMARK 3 7 3.2266 - 3.0650 1.00 2270 151 0.2118 0.2447 REMARK 3 8 3.0650 - 2.9316 0.99 2227 149 0.2059 0.2361 REMARK 3 9 2.9316 - 2.8188 0.99 2246 150 0.2081 0.2478 REMARK 3 10 2.8188 - 2.7215 0.98 2218 147 0.2230 0.3104 REMARK 3 11 2.7215 - 2.6364 0.95 2152 143 0.2586 0.2961 REMARK 3 12 2.6364 - 2.5611 0.88 1973 132 0.2445 0.2875 REMARK 3 13 2.5611 - 2.4937 0.79 1770 117 0.2564 0.2526 REMARK 3 14 2.4937 - 2.4328 0.56 1272 85 0.2580 0.2932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5822 REMARK 3 ANGLE : 0.543 7894 REMARK 3 CHIRALITY : 0.038 778 REMARK 3 PLANARITY : 0.003 1008 REMARK 3 DIHEDRAL : 10.604 3414 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.433 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.12750 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48910 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, NA-NITRATE, PEG3350, TREHALOSE, REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.46450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.35800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.27450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.35800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.46450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.27450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 453 REMARK 465 ALA B 453 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 647 O HOH B 653 2.05 REMARK 500 O HOH A 633 O HOH A 643 2.08 REMARK 500 O ALA B 158 O HOH B 601 2.13 REMARK 500 O HOH B 641 O HOH B 644 2.13 REMARK 500 OG SER A 139 O HOH A 601 2.13 REMARK 500 OE1 GLN A 261 O HOH A 602 2.15 REMARK 500 O ILE B 296 O HOH B 602 2.15 REMARK 500 OD2 ASP A 197 O HOH A 603 2.16 REMARK 500 ND2 ASN A 431 O HOH A 604 2.17 REMARK 500 OH TYR A 348 OH TYR A 390 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 200 59.38 -100.95 REMARK 500 SER A 271 97.15 -161.88 REMARK 500 PRO A 312 -164.23 -65.75 REMARK 500 GLU A 315 153.37 -48.12 REMARK 500 GLU A 329 50.05 -145.43 REMARK 500 SER A 341 13.96 -143.93 REMARK 500 ASP A 369 -144.90 -113.11 REMARK 500 TRP A 372 87.91 -172.74 REMARK 500 PHE A 378 55.89 -92.72 REMARK 500 MET B 200 70.08 -105.92 REMARK 500 ASP B 260 -74.18 -96.09 REMARK 500 SER B 271 99.84 -161.22 REMARK 500 GLU B 329 44.89 -104.07 REMARK 500 SER B 341 15.83 -142.68 REMARK 500 ASP B 369 -154.75 -112.14 REMARK 500 TRP B 372 87.28 -169.92 REMARK 500 LYS B 451 72.44 -106.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 TRS A 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 227 OD2 REMARK 620 2 ASP A 229 OD1 116.5 REMARK 620 3 HIS A 377 NE2 89.1 86.3 REMARK 620 4 UDP A 502 O2B 91.6 98.6 174.1 REMARK 620 5 NO3 A 504 O3 96.0 147.0 88.6 85.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 227 OD2 REMARK 620 2 ASP B 229 OD1 101.9 REMARK 620 3 ASP B 229 OD2 159.5 60.2 REMARK 620 4 HIS B 377 NE2 94.0 72.4 89.9 REMARK 620 5 UDP B 502 O3B 95.5 112.2 83.6 168.2 REMARK 620 6 NO3 B 504 O2 108.4 145.4 91.7 89.1 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 504 DBREF 6BSV A 116 453 UNP Q9LZJ3 XXT1_ARATH 116 453 DBREF 6BSV B 116 453 UNP Q9LZJ3 XXT1_ARATH 116 453 SEQRES 1 A 338 PRO TYR SER LEU GLY PRO LYS ILE SER ASP TRP ASP GLU SEQRES 2 A 338 GLN ARG ARG ASP TRP LEU LYS GLN ASN PRO SER PHE PRO SEQRES 3 A 338 ASN PHE VAL ALA PRO ASN LYS PRO ARG VAL LEU LEU VAL SEQRES 4 A 338 THR GLY SER ALA PRO LYS PRO CYS GLU ASN PRO VAL GLY SEQRES 5 A 338 ASP HIS TYR LEU LEU LYS SER ILE LYS ASN LYS ILE ASP SEQRES 6 A 338 TYR CYS ARG ILE HIS GLY ILE GLU ILE PHE TYR ASN MET SEQRES 7 A 338 ALA LEU LEU ASP ALA GLU MET ALA GLY PHE TRP ALA LYS SEQRES 8 A 338 LEU PRO LEU ILE ARG LYS LEU LEU LEU SER HIS PRO GLU SEQRES 9 A 338 ILE GLU PHE LEU TRP TRP MET ASP SER ASP ALA MET PHE SEQRES 10 A 338 THR ASP MET VAL PHE GLU LEU PRO TRP GLU ARG TYR LYS SEQRES 11 A 338 ASP TYR ASN LEU VAL MET HIS GLY TRP ASN GLU MET VAL SEQRES 12 A 338 TYR ASP GLN LYS ASN TRP ILE GLY LEU ASN THR GLY SER SEQRES 13 A 338 PHE LEU LEU ARG ASN SER GLN TRP SER LEU ASP LEU LEU SEQRES 14 A 338 ASP ALA TRP ALA PRO MET GLY PRO LYS GLY LYS ILE ARG SEQRES 15 A 338 GLU GLU ALA GLY LYS VAL LEU THR ARG GLU LEU LYS ASP SEQRES 16 A 338 ARG PRO ALA PHE GLU ALA ASP ASP GLN SER ALA MET VAL SEQRES 17 A 338 TYR LEU LEU ALA THR GLU ARG GLU LYS TRP GLY GLY LYS SEQRES 18 A 338 VAL TYR LEU GLU SER GLY TYR TYR LEU HIS GLY TYR TRP SEQRES 19 A 338 GLY ILE LEU VAL ASP ARG TYR GLU GLU MET ILE GLU ASN SEQRES 20 A 338 HIS LYS PRO GLY PHE GLY ASP HIS ARG TRP PRO LEU VAL SEQRES 21 A 338 THR HIS PHE VAL GLY CYS LYS PRO CYS GLY LYS PHE GLY SEQRES 22 A 338 ASP TYR PRO VAL GLU ARG CYS LEU ARG GLN MET ASP ARG SEQRES 23 A 338 ALA PHE ASN PHE GLY ASP ASN GLN ILE LEU GLN MET TYR SEQRES 24 A 338 GLY PHE THR HIS LYS SER LEU GLY SER ARG ARG VAL LYS SEQRES 25 A 338 PRO THR ARG ASN GLN THR ASP ARG PRO LEU ASP ALA LYS SEQRES 26 A 338 ASP GLU PHE GLY LEU LEU HIS PRO PRO PHE LYS ALA ALA SEQRES 1 B 338 PRO TYR SER LEU GLY PRO LYS ILE SER ASP TRP ASP GLU SEQRES 2 B 338 GLN ARG ARG ASP TRP LEU LYS GLN ASN PRO SER PHE PRO SEQRES 3 B 338 ASN PHE VAL ALA PRO ASN LYS PRO ARG VAL LEU LEU VAL SEQRES 4 B 338 THR GLY SER ALA PRO LYS PRO CYS GLU ASN PRO VAL GLY SEQRES 5 B 338 ASP HIS TYR LEU LEU LYS SER ILE LYS ASN LYS ILE ASP SEQRES 6 B 338 TYR CYS ARG ILE HIS GLY ILE GLU ILE PHE TYR ASN MET SEQRES 7 B 338 ALA LEU LEU ASP ALA GLU MET ALA GLY PHE TRP ALA LYS SEQRES 8 B 338 LEU PRO LEU ILE ARG LYS LEU LEU LEU SER HIS PRO GLU SEQRES 9 B 338 ILE GLU PHE LEU TRP TRP MET ASP SER ASP ALA MET PHE SEQRES 10 B 338 THR ASP MET VAL PHE GLU LEU PRO TRP GLU ARG TYR LYS SEQRES 11 B 338 ASP TYR ASN LEU VAL MET HIS GLY TRP ASN GLU MET VAL SEQRES 12 B 338 TYR ASP GLN LYS ASN TRP ILE GLY LEU ASN THR GLY SER SEQRES 13 B 338 PHE LEU LEU ARG ASN SER GLN TRP SER LEU ASP LEU LEU SEQRES 14 B 338 ASP ALA TRP ALA PRO MET GLY PRO LYS GLY LYS ILE ARG SEQRES 15 B 338 GLU GLU ALA GLY LYS VAL LEU THR ARG GLU LEU LYS ASP SEQRES 16 B 338 ARG PRO ALA PHE GLU ALA ASP ASP GLN SER ALA MET VAL SEQRES 17 B 338 TYR LEU LEU ALA THR GLU ARG GLU LYS TRP GLY GLY LYS SEQRES 18 B 338 VAL TYR LEU GLU SER GLY TYR TYR LEU HIS GLY TYR TRP SEQRES 19 B 338 GLY ILE LEU VAL ASP ARG TYR GLU GLU MET ILE GLU ASN SEQRES 20 B 338 HIS LYS PRO GLY PHE GLY ASP HIS ARG TRP PRO LEU VAL SEQRES 21 B 338 THR HIS PHE VAL GLY CYS LYS PRO CYS GLY LYS PHE GLY SEQRES 22 B 338 ASP TYR PRO VAL GLU ARG CYS LEU ARG GLN MET ASP ARG SEQRES 23 B 338 ALA PHE ASN PHE GLY ASP ASN GLN ILE LEU GLN MET TYR SEQRES 24 B 338 GLY PHE THR HIS LYS SER LEU GLY SER ARG ARG VAL LYS SEQRES 25 B 338 PRO THR ARG ASN GLN THR ASP ARG PRO LEU ASP ALA LYS SEQRES 26 B 338 ASP GLU PHE GLY LEU LEU HIS PRO PRO PHE LYS ALA ALA HET MN A 501 1 HET UDP A 502 36 HET TRS A 503 20 HET NO3 A 504 4 HET MN B 501 1 HET UDP B 502 35 HET TRS B 503 20 HET NO3 B 504 4 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NO3 NITRATE ION HETSYN TRS TRIS BUFFER FORMUL 3 MN 2(MN 2+) FORMUL 4 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 6 NO3 2(N O3 1-) FORMUL 11 HOH *101(H2 O) HELIX 1 AA1 ASP A 125 ASN A 137 1 13 HELIX 2 AA2 VAL A 166 HIS A 185 1 20 HELIX 3 AA3 ASP A 197 TRP A 204 5 8 HELIX 4 AA4 ALA A 205 HIS A 217 1 13 HELIX 5 AA5 TRP A 241 LYS A 245 5 5 HELIX 6 AA6 TRP A 254 ASP A 260 1 7 HELIX 7 AA7 SER A 277 ALA A 288 1 12 HELIX 8 AA8 PRO A 289 GLY A 291 5 3 HELIX 9 AA9 GLY A 294 LEU A 308 1 15 HELIX 10 AB1 ASP A 317 GLU A 329 1 13 HELIX 11 AB2 GLU A 329 GLY A 334 1 6 HELIX 12 AB3 TYR A 348 ASP A 354 5 7 HELIX 13 AB4 ARG A 355 HIS A 363 1 9 HELIX 14 AB5 PRO A 391 GLN A 412 1 22 HELIX 15 AB6 PRO A 448 ALA A 452 5 5 HELIX 16 AB7 ASP B 125 ASN B 137 1 13 HELIX 17 AB8 PRO B 165 GLY B 186 1 22 HELIX 18 AB9 ALA B 201 TRP B 204 5 4 HELIX 19 AC1 ALA B 205 HIS B 217 1 13 HELIX 20 AC2 PRO B 240 LYS B 245 5 6 HELIX 21 AC3 TRP B 254 ASP B 260 1 7 HELIX 22 AC4 SER B 277 ALA B 288 1 12 HELIX 23 AC5 PRO B 289 GLY B 291 5 3 HELIX 24 AC6 GLY B 294 LEU B 308 1 15 HELIX 25 AC7 ASP B 317 GLU B 329 1 13 HELIX 26 AC8 GLU B 329 GLY B 334 1 6 HELIX 27 AC9 TYR B 348 VAL B 353 1 6 HELIX 28 AD1 ARG B 355 HIS B 363 1 9 HELIX 29 AD2 PRO B 391 TYR B 414 1 24 HELIX 30 AD3 ARG B 435 ALA B 439 5 5 SHEET 1 AA1 2 PHE A 143 ALA A 145 0 SHEET 2 AA1 2 LYS A 148 PRO A 149 -1 O LYS A 148 N ALA A 145 SHEET 1 AA2 6 GLU A 188 ASN A 192 0 SHEET 2 AA2 6 VAL A 151 GLY A 156 1 N LEU A 153 O GLU A 188 SHEET 3 AA2 6 PHE A 222 MET A 226 1 O TRP A 224 N LEU A 152 SHEET 4 AA2 6 LEU A 267 ARG A 275 -1 O LEU A 274 N LEU A 223 SHEET 5 AA2 6 LEU A 249 GLY A 253 -1 N VAL A 250 O LEU A 273 SHEET 6 AA2 6 VAL A 337 GLU A 340 1 O GLU A 340 N MET A 251 SHEET 1 AA3 2 ALA A 230 PHE A 232 0 SHEET 2 AA3 2 VAL A 375 HIS A 377 -1 O THR A 376 N MET A 231 SHEET 1 AA4 2 PHE A 416 HIS A 418 0 SHEET 2 AA4 2 VAL A 426 PRO A 428 -1 O LYS A 427 N THR A 417 SHEET 1 AA5 2 PHE B 143 ALA B 145 0 SHEET 2 AA5 2 LYS B 148 PRO B 149 -1 O LYS B 148 N ALA B 145 SHEET 1 AA6 6 GLU B 188 ASN B 192 0 SHEET 2 AA6 6 VAL B 151 GLY B 156 1 N THR B 155 O ASN B 192 SHEET 3 AA6 6 PHE B 222 MET B 226 1 O TRP B 224 N VAL B 154 SHEET 4 AA6 6 LEU B 267 ARG B 275 -1 O LEU B 274 N LEU B 223 SHEET 5 AA6 6 LEU B 249 GLY B 253 -1 N VAL B 250 O LEU B 273 SHEET 6 AA6 6 VAL B 337 GLU B 340 1 O TYR B 338 N LEU B 249 SHEET 1 AA7 2 ALA B 230 PHE B 232 0 SHEET 2 AA7 2 VAL B 375 HIS B 377 -1 O THR B 376 N MET B 231 SHEET 1 AA8 2 PHE B 416 HIS B 418 0 SHEET 2 AA8 2 VAL B 426 PRO B 428 -1 O LYS B 427 N THR B 417 SSBOND 1 CYS A 162 CYS A 384 1555 1555 2.03 SSBOND 2 CYS A 381 CYS A 395 1555 1555 2.03 SSBOND 3 CYS B 162 CYS B 384 1555 1555 2.03 SSBOND 4 CYS B 381 CYS B 395 1555 1555 2.03 LINK OD2 ASP A 227 MN MN A 501 1555 1555 1.95 LINK OD1 ASP A 229 MN MN A 501 1555 1555 2.22 LINK NE2 HIS A 377 MN MN A 501 1555 1555 2.04 LINK MN MN A 501 O2B UDP A 502 1555 1555 2.45 LINK MN MN A 501 O3 NO3 A 504 1555 1555 2.68 LINK OD2 ASP B 227 MN MN B 501 1555 1555 2.18 LINK OD1 ASP B 229 MN MN B 501 1555 1555 2.22 LINK OD2 ASP B 229 MN MN B 501 1555 1555 2.15 LINK NE2 HIS B 377 MN MN B 501 1555 1555 2.24 LINK MN MN B 501 O3B UDP B 502 1555 1555 2.24 LINK MN MN B 501 O2 NO3 B 504 1555 1555 2.36 SITE 1 AC1 5 ASP A 227 ASP A 229 HIS A 377 UDP A 502 SITE 2 AC1 5 NO3 A 504 SITE 1 AC2 9 GLY A 156 PHE A 203 TRP A 225 ASP A 227 SITE 2 AC2 9 SER A 228 ASP A 229 LYS A 382 MN A 501 SITE 3 AC2 9 NO3 A 504 SITE 1 AC3 4 ASN A 255 VAL A 337 TYR A 338 LEU A 339 SITE 1 AC4 7 ASP A 227 HIS A 377 VAL A 379 GLY A 380 SITE 2 AC4 7 LYS A 382 MN A 501 UDP A 502 SITE 1 AC5 5 ASP B 227 ASP B 229 HIS B 377 UDP B 502 SITE 2 AC5 5 NO3 B 504 SITE 1 AC6 11 GLY B 156 SER B 157 PHE B 203 TRP B 225 SITE 2 AC6 11 ASP B 227 SER B 228 ASP B 229 LYS B 382 SITE 3 AC6 11 MN B 501 NO3 B 504 HOH B 632 SITE 1 AC7 5 ASN B 255 VAL B 337 TYR B 338 LEU B 339 SITE 2 AC7 5 HOH B 614 SITE 1 AC8 7 ASP B 227 ASP B 229 HIS B 377 VAL B 379 SITE 2 AC8 7 GLY B 380 MN B 501 UDP B 502 CRYST1 64.929 94.549 144.716 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006910 0.00000