HEADER SIGNALING PROTEIN 04-DEC-17 6BT0 TITLE CRYSTAL STRUCTURE OF RHEB IN COMPLEX WITH COMPOUND NR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RHEB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RAS HOMOLOG ENRICHED IN BRAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RHEB, RHEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MTORC1 G-PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MAHONEY REVDAT 3 04-OCT-23 6BT0 1 REMARK REVDAT 2 21-OCT-20 6BT0 1 REMARK LINK REVDAT 1 28-FEB-18 6BT0 0 JRNL AUTH S.J.MAHONEY,S.NARAYAN,L.MOLZ,L.A.BERSTLER,S.A.KANG, JRNL AUTH 2 G.P.VLASUK,E.SAIAH JRNL TITL A SMALL MOLECULE INHIBITOR OF RHEB SELECTIVELY TARGETS JRNL TITL 2 MTORC1 SIGNALING. JRNL REF NAT COMMUN V. 9 548 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29416044 JRNL DOI 10.1038/S41467-018-03035-Z REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 17913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : -0.70000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.55000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.477 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.818 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5594 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5376 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7582 ; 1.619 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12384 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 669 ; 8.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;41.590 ;25.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1018 ;17.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 869 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6157 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1231 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6BT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 1.989 REMARK 200 R MERGE (I) : 0.31200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.96 REMARK 200 R MERGE FOR SHELL (I) : 1.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 1500, 0.1M NA ACETATE PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 GLU C 171 REMARK 465 HIS C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 GLU D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 465 HIS D 176 REMARK 465 HIS D 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 14 -83.68 -67.83 REMARK 500 ARG A 15 118.52 -177.53 REMARK 500 SER A 68 158.72 -49.09 REMARK 500 ILE A 76 -83.56 17.13 REMARK 500 LYS A 120 30.65 74.20 REMARK 500 SER A 140 -37.07 -35.09 REMARK 500 LYS A 169 -39.71 -39.20 REMARK 500 ASP B 33 -48.19 116.87 REMARK 500 GLN B 72 13.53 -69.11 REMARK 500 THR B 73 -90.68 -144.94 REMARK 500 TYR B 74 -85.79 42.02 REMARK 500 ILE B 76 -31.21 53.19 REMARK 500 ASP B 77 -77.55 -135.96 REMARK 500 ILE B 78 104.08 12.86 REMARK 500 SER C 4 141.15 178.69 REMARK 500 THR C 73 -107.57 -104.93 REMARK 500 TYR C 74 -159.90 56.43 REMARK 500 ILE C 76 -99.07 97.49 REMARK 500 VAL C 110 95.06 -53.64 REMARK 500 SER D 4 118.66 -28.80 REMARK 500 ASP D 33 -49.87 -29.71 REMARK 500 ASP D 36 101.59 -34.33 REMARK 500 PRO D 37 32.84 -87.16 REMARK 500 THR D 38 -63.85 -121.89 REMARK 500 PRO D 71 101.88 -51.22 REMARK 500 THR D 73 85.58 -66.38 REMARK 500 ILE D 76 48.40 -91.66 REMARK 500 MET D 106 -54.45 -176.83 REMARK 500 VAL D 107 -85.72 -66.14 REMARK 500 LYS D 109 -61.38 66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR C 74 SER C 75 -32.71 REMARK 500 VAL C 110 GLN C 111 -146.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 OG REMARK 620 2 GDP A 202 O1B 87.1 REMARK 620 3 HOH A 301 O 75.3 92.5 REMARK 620 4 HOH A 302 O 92.0 87.9 167.2 REMARK 620 5 HOH A 303 O 87.2 174.0 87.6 90.7 REMARK 620 6 HOH A 304 O 161.3 99.4 86.8 105.7 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 20 OG REMARK 620 2 GDP B 202 O3B 62.6 REMARK 620 3 HOH B 302 O 78.1 71.6 REMARK 620 4 HOH B 303 O 87.8 63.3 134.3 REMARK 620 5 HOH B 305 O 108.4 159.7 89.0 136.6 REMARK 620 6 HOH B 306 O 128.6 68.1 73.2 83.0 112.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 20 OG REMARK 620 2 GDP C 202 O1B 81.1 REMARK 620 3 HOH C 301 O 77.8 68.8 REMARK 620 4 HOH C 303 O 176.5 98.4 105.3 REMARK 620 5 HOH C 304 O 85.0 158.6 123.9 94.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 20 OG REMARK 620 2 GDP D 202 O3B 73.3 REMARK 620 3 GDP D 202 O2B 128.1 56.9 REMARK 620 4 HOH D 302 O 83.3 87.1 80.6 REMARK 620 5 HOH D 303 O 77.5 149.9 153.2 96.7 REMARK 620 6 HOH D 304 O 77.0 87.8 112.1 160.3 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E7V B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BSX RELATED DB: PDB DBREF 6BT0 A 1 169 UNP Q15382 RHEB_HUMAN 1 169 DBREF 6BT0 B 1 169 UNP Q15382 RHEB_HUMAN 1 169 DBREF 6BT0 C 1 169 UNP Q15382 RHEB_HUMAN 1 169 DBREF 6BT0 D 1 169 UNP Q15382 RHEB_HUMAN 1 169 SEQADV 6BT0 SER A 0 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 LEU A 170 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 GLU A 171 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 172 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 173 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 174 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 175 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 176 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS A 177 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 SER B 0 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 LEU B 170 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 GLU B 171 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 172 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 173 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 174 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 175 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 176 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS B 177 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 SER C 0 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 LEU C 170 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 GLU C 171 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 172 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 173 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 174 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 175 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 176 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS C 177 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 SER D 0 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 LEU D 170 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 GLU D 171 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 172 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 173 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 174 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 175 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 176 UNP Q15382 EXPRESSION TAG SEQADV 6BT0 HIS D 177 UNP Q15382 EXPRESSION TAG SEQRES 1 A 178 SER MET PRO GLN SER LYS SER ARG LYS ILE ALA ILE LEU SEQRES 2 A 178 GLY TYR ARG SER VAL GLY LYS SER SER LEU THR ILE GLN SEQRES 3 A 178 PHE VAL GLU GLY GLN PHE VAL ASP SER TYR ASP PRO THR SEQRES 4 A 178 ILE GLU ASN THR PHE THR LYS LEU ILE THR VAL ASN GLY SEQRES 5 A 178 GLN GLU TYR HIS LEU GLN LEU VAL ASP THR ALA GLY GLN SEQRES 6 A 178 ASP GLU TYR SER ILE PHE PRO GLN THR TYR SER ILE ASP SEQRES 7 A 178 ILE ASN GLY TYR ILE LEU VAL TYR SER VAL THR SER ILE SEQRES 8 A 178 LYS SER PHE GLU VAL ILE LYS VAL ILE HIS GLY LYS LEU SEQRES 9 A 178 LEU ASP MET VAL GLY LYS VAL GLN ILE PRO ILE MET LEU SEQRES 10 A 178 VAL GLY ASN LYS LYS ASP LEU HIS MET GLU ARG VAL ILE SEQRES 11 A 178 SER TYR GLU GLU GLY LYS ALA LEU ALA GLU SER TRP ASN SEQRES 12 A 178 ALA ALA PHE LEU GLU SER SER ALA LYS GLU ASN GLN THR SEQRES 13 A 178 ALA VAL ASP VAL PHE ARG ARG ILE ILE LEU GLU ALA GLU SEQRES 14 A 178 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 178 SER MET PRO GLN SER LYS SER ARG LYS ILE ALA ILE LEU SEQRES 2 B 178 GLY TYR ARG SER VAL GLY LYS SER SER LEU THR ILE GLN SEQRES 3 B 178 PHE VAL GLU GLY GLN PHE VAL ASP SER TYR ASP PRO THR SEQRES 4 B 178 ILE GLU ASN THR PHE THR LYS LEU ILE THR VAL ASN GLY SEQRES 5 B 178 GLN GLU TYR HIS LEU GLN LEU VAL ASP THR ALA GLY GLN SEQRES 6 B 178 ASP GLU TYR SER ILE PHE PRO GLN THR TYR SER ILE ASP SEQRES 7 B 178 ILE ASN GLY TYR ILE LEU VAL TYR SER VAL THR SER ILE SEQRES 8 B 178 LYS SER PHE GLU VAL ILE LYS VAL ILE HIS GLY LYS LEU SEQRES 9 B 178 LEU ASP MET VAL GLY LYS VAL GLN ILE PRO ILE MET LEU SEQRES 10 B 178 VAL GLY ASN LYS LYS ASP LEU HIS MET GLU ARG VAL ILE SEQRES 11 B 178 SER TYR GLU GLU GLY LYS ALA LEU ALA GLU SER TRP ASN SEQRES 12 B 178 ALA ALA PHE LEU GLU SER SER ALA LYS GLU ASN GLN THR SEQRES 13 B 178 ALA VAL ASP VAL PHE ARG ARG ILE ILE LEU GLU ALA GLU SEQRES 14 B 178 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 178 SER MET PRO GLN SER LYS SER ARG LYS ILE ALA ILE LEU SEQRES 2 C 178 GLY TYR ARG SER VAL GLY LYS SER SER LEU THR ILE GLN SEQRES 3 C 178 PHE VAL GLU GLY GLN PHE VAL ASP SER TYR ASP PRO THR SEQRES 4 C 178 ILE GLU ASN THR PHE THR LYS LEU ILE THR VAL ASN GLY SEQRES 5 C 178 GLN GLU TYR HIS LEU GLN LEU VAL ASP THR ALA GLY GLN SEQRES 6 C 178 ASP GLU TYR SER ILE PHE PRO GLN THR TYR SER ILE ASP SEQRES 7 C 178 ILE ASN GLY TYR ILE LEU VAL TYR SER VAL THR SER ILE SEQRES 8 C 178 LYS SER PHE GLU VAL ILE LYS VAL ILE HIS GLY LYS LEU SEQRES 9 C 178 LEU ASP MET VAL GLY LYS VAL GLN ILE PRO ILE MET LEU SEQRES 10 C 178 VAL GLY ASN LYS LYS ASP LEU HIS MET GLU ARG VAL ILE SEQRES 11 C 178 SER TYR GLU GLU GLY LYS ALA LEU ALA GLU SER TRP ASN SEQRES 12 C 178 ALA ALA PHE LEU GLU SER SER ALA LYS GLU ASN GLN THR SEQRES 13 C 178 ALA VAL ASP VAL PHE ARG ARG ILE ILE LEU GLU ALA GLU SEQRES 14 C 178 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 178 SER MET PRO GLN SER LYS SER ARG LYS ILE ALA ILE LEU SEQRES 2 D 178 GLY TYR ARG SER VAL GLY LYS SER SER LEU THR ILE GLN SEQRES 3 D 178 PHE VAL GLU GLY GLN PHE VAL ASP SER TYR ASP PRO THR SEQRES 4 D 178 ILE GLU ASN THR PHE THR LYS LEU ILE THR VAL ASN GLY SEQRES 5 D 178 GLN GLU TYR HIS LEU GLN LEU VAL ASP THR ALA GLY GLN SEQRES 6 D 178 ASP GLU TYR SER ILE PHE PRO GLN THR TYR SER ILE ASP SEQRES 7 D 178 ILE ASN GLY TYR ILE LEU VAL TYR SER VAL THR SER ILE SEQRES 8 D 178 LYS SER PHE GLU VAL ILE LYS VAL ILE HIS GLY LYS LEU SEQRES 9 D 178 LEU ASP MET VAL GLY LYS VAL GLN ILE PRO ILE MET LEU SEQRES 10 D 178 VAL GLY ASN LYS LYS ASP LEU HIS MET GLU ARG VAL ILE SEQRES 11 D 178 SER TYR GLU GLU GLY LYS ALA LEU ALA GLU SER TRP ASN SEQRES 12 D 178 ALA ALA PHE LEU GLU SER SER ALA LYS GLU ASN GLN THR SEQRES 13 D 178 ALA VAL ASP VAL PHE ARG ARG ILE ILE LEU GLU ALA GLU SEQRES 14 D 178 LYS LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 201 1 HET GDP A 202 28 HET MG B 201 1 HET GDP B 202 28 HET E7V B 203 34 HET MG C 201 1 HET GDP C 202 28 HET MG D 201 1 HET GDP D 202 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM E7V 4-BROMO-6-[(3,4-DICHLOROPHENYL)SULFANYL]-1-{[4- HETNAM 2 E7V (DIMETHYLCARBAMOYL)PHENYL]METHYL}-1H-INDOLE-2- HETNAM 3 E7V CARBOXYLIC ACID FORMUL 5 MG 4(MG 2+) FORMUL 6 GDP 4(C10 H15 N5 O11 P2) FORMUL 9 E7V C25 H19 BR CL2 N2 O3 S FORMUL 14 HOH *18(H2 O) HELIX 1 AA1 GLY A 18 GLY A 29 1 12 HELIX 2 AA2 PRO A 71 SER A 75 5 5 HELIX 3 AA3 SER A 89 GLY A 108 1 20 HELIX 4 AA4 SER A 130 TRP A 141 1 12 HELIX 5 AA5 GLU A 152 LYS A 169 1 18 HELIX 6 AA6 GLY B 18 GLY B 29 1 12 HELIX 7 AA7 SER B 89 GLY B 108 1 20 HELIX 8 AA8 LEU B 123 ARG B 127 5 5 HELIX 9 AA9 SER B 130 SER B 140 1 11 HELIX 10 AB1 GLU B 152 LYS B 169 1 18 HELIX 11 AB2 GLY C 18 GLY C 29 1 12 HELIX 12 AB3 SER C 89 GLY C 108 1 20 HELIX 13 AB4 SER C 130 TRP C 141 1 12 HELIX 14 AB5 GLU C 152 LYS C 169 1 18 HELIX 15 AB6 GLY D 18 GLY D 29 1 12 HELIX 16 AB7 SER D 89 ASP D 105 1 17 HELIX 17 AB8 SER D 130 SER D 140 1 11 HELIX 18 AB9 GLU D 152 LYS D 169 1 18 SHEET 1 AA1 6 ASN A 41 VAL A 49 0 SHEET 2 AA1 6 GLN A 52 ASP A 60 -1 O LEU A 58 N PHE A 43 SHEET 3 AA1 6 LYS A 5 GLY A 13 1 N ILE A 9 O VAL A 59 SHEET 4 AA1 6 GLY A 80 SER A 86 1 O ILE A 82 N LEU A 12 SHEET 5 AA1 6 ILE A 114 ASN A 119 1 O VAL A 117 N LEU A 83 SHEET 6 AA1 6 ALA A 144 GLU A 147 1 O ALA A 144 N LEU A 116 SHEET 1 AA2 6 ASN B 41 VAL B 49 0 SHEET 2 AA2 6 GLN B 52 ASP B 60 -1 O LEU B 58 N PHE B 43 SHEET 3 AA2 6 LYS B 5 GLY B 13 1 N ILE B 11 O VAL B 59 SHEET 4 AA2 6 GLY B 80 SER B 86 1 O VAL B 84 N LEU B 12 SHEET 5 AA2 6 ILE B 114 ASN B 119 1 O MET B 115 N LEU B 83 SHEET 6 AA2 6 ALA B 144 GLU B 147 1 O ALA B 144 N LEU B 116 SHEET 1 AA3 6 ASN C 41 VAL C 49 0 SHEET 2 AA3 6 GLN C 52 ASP C 60 -1 O LEU C 58 N PHE C 43 SHEET 3 AA3 6 LYS C 5 LEU C 12 1 N ILE C 9 O VAL C 59 SHEET 4 AA3 6 GLY C 80 SER C 86 1 O ILE C 82 N ALA C 10 SHEET 5 AA3 6 ILE C 114 ASN C 119 1 O MET C 115 N LEU C 83 SHEET 6 AA3 6 ALA C 144 GLU C 147 1 O ALA C 144 N LEU C 116 SHEET 1 AA4 6 ASN D 41 VAL D 49 0 SHEET 2 AA4 6 GLN D 52 ASP D 60 -1 O LEU D 58 N PHE D 43 SHEET 3 AA4 6 LYS D 5 GLY D 13 1 N ARG D 7 O HIS D 55 SHEET 4 AA4 6 GLY D 80 SER D 86 1 O GLY D 80 N ALA D 10 SHEET 5 AA4 6 ILE D 114 ASN D 119 1 O ASN D 119 N TYR D 85 SHEET 6 AA4 6 ALA D 144 GLU D 147 1 O ALA D 144 N LEU D 116 LINK OG SER A 20 MG MG A 201 1555 1555 2.11 LINK MG MG A 201 O1B GDP A 202 1555 1555 1.96 LINK MG MG A 201 O HOH A 301 1555 1555 1.98 LINK MG MG A 201 O HOH A 302 1555 1555 2.08 LINK MG MG A 201 O HOH A 303 1555 1555 2.21 LINK MG MG A 201 O HOH A 304 1555 1555 2.01 LINK OG SER B 20 MG MG B 201 1555 1555 2.07 LINK MG MG B 201 O3B GDP B 202 1555 1555 2.65 LINK MG MG B 201 O HOH B 302 1555 1555 1.98 LINK MG MG B 201 O HOH B 303 1555 1555 2.28 LINK MG MG B 201 O HOH B 305 1555 1555 2.62 LINK MG MG B 201 O HOH B 306 1555 1555 2.30 LINK OG SER C 20 MG MG C 201 1555 1555 2.04 LINK MG MG C 201 O1B GDP C 202 1555 1555 2.25 LINK MG MG C 201 O HOH C 301 1555 1555 2.20 LINK MG MG C 201 O HOH C 303 1555 1555 1.91 LINK MG MG C 201 O HOH C 304 1555 1555 2.76 LINK OG SER D 20 MG MG D 201 1555 1555 2.29 LINK MG MG D 201 O3B GDP D 202 1555 1555 2.07 LINK MG MG D 201 O2B GDP D 202 1555 1555 2.97 LINK MG MG D 201 O HOH D 302 1555 1555 1.93 LINK MG MG D 201 O HOH D 303 1555 1555 1.92 LINK MG MG D 201 O HOH D 304 1555 1555 2.30 SITE 1 AC1 6 SER A 20 GDP A 202 HOH A 301 HOH A 302 SITE 2 AC1 6 HOH A 303 HOH A 304 SITE 1 AC2 18 SER A 16 VAL A 17 GLY A 18 LYS A 19 SITE 2 AC2 18 SER A 20 SER A 21 PHE A 31 ASP A 33 SITE 3 AC2 18 ASN A 119 LYS A 120 ASP A 122 LEU A 123 SITE 4 AC2 18 SER A 149 ALA A 150 MG A 201 HOH A 301 SITE 5 AC2 18 HOH A 302 HOH A 304 SITE 1 AC3 8 SER B 20 ASP B 36 ASP B 60 GDP B 202 SITE 2 AC3 8 HOH B 302 HOH B 303 HOH B 305 HOH B 306 SITE 1 AC4 19 SER B 16 VAL B 17 GLY B 18 LYS B 19 SITE 2 AC4 19 SER B 20 SER B 21 PHE B 31 ASP B 33 SITE 3 AC4 19 ASN B 119 LYS B 120 ASP B 122 LEU B 123 SITE 4 AC4 19 SER B 149 ALA B 150 LYS B 151 MG B 201 SITE 5 AC4 19 HOH B 302 HOH B 303 HOH B 306 SITE 1 AC5 10 GLU B 40 ALA B 62 GLY B 63 PHE B 70 SITE 2 AC5 10 TYR B 74 LYS C 8 GLU C 40 THR C 42 SITE 3 AC5 10 GLN C 57 VAL C 59 SITE 1 AC6 5 SER C 20 GDP C 202 HOH C 301 HOH C 303 SITE 2 AC6 5 HOH C 304 SITE 1 AC7 18 SER C 16 VAL C 17 GLY C 18 LYS C 19 SITE 2 AC7 18 SER C 20 SER C 21 PHE C 31 VAL C 32 SITE 3 AC7 18 ASP C 33 ASN C 119 LYS C 120 ASP C 122 SITE 4 AC7 18 LEU C 123 SER C 149 ALA C 150 MG C 201 SITE 5 AC7 18 HOH C 301 HOH C 303 SITE 1 AC8 5 SER D 20 GDP D 202 HOH D 302 HOH D 303 SITE 2 AC8 5 HOH D 304 SITE 1 AC9 19 SER D 16 VAL D 17 GLY D 18 LYS D 19 SITE 2 AC9 19 SER D 20 SER D 21 PHE D 31 VAL D 32 SITE 3 AC9 19 ASP D 33 ASN D 119 LYS D 120 ASP D 122 SITE 4 AC9 19 LEU D 123 SER D 149 ALA D 150 LYS D 151 SITE 5 AC9 19 MG D 201 HOH D 302 HOH D 304 CRYST1 49.150 60.140 66.320 68.35 90.01 72.05 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020346 -0.006591 0.002776 0.00000 SCALE2 0.000000 0.017479 -0.007354 0.00000 SCALE3 0.000000 0.000000 0.016359 0.00000