HEADER TRANSPORT PROTEIN 08-DEC-17 6BU5 OBSLTE 03-MAY-23 6BU5 8E6N TITLE CRYSTAL STRUCTURE OF THE DEINOCOCCUS RADIODURANS NRAMP/MNTH DIVALENT TITLE 2 TRANSITION METAL TRANSPORTER IN THE OUTWARD-OPEN, MANGANESE-BOUND TITLE 3 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIVALENT METAL CATION TRANSPORTER MNTH; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: MNTH, DR_1709; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS DIVALENT TRANSITION METAL TRANSPORTER, LEUT-FOLD, MANGANESE IMPORTER, KEYWDS 2 PROTON-COUPLED SECONDARY TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.BOZZI,C.M.ZIMANYI,J.M.NICOLUDIS,R.GAUDET REVDAT 4 03-MAY-23 6BU5 1 OBSLTE LINK REVDAT 3 01-JAN-20 6BU5 1 REMARK REVDAT 2 20-FEB-19 6BU5 1 AUTHOR JRNL REVDAT 1 12-DEC-18 6BU5 0 JRNL AUTH A.T.BOZZI,C.M.ZIMANYI,J.M.NICOLUDIS,B.K.LEE,C.H.ZHANG, JRNL AUTH 2 R.GAUDET JRNL TITL STRUCTURES IN MULTIPLE CONFORMATIONS REVEAL DISTINCT JRNL TITL 2 TRANSITION METAL AND PROTON PATHWAYS IN AN NRAMP JRNL TITL 3 TRANSPORTER. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 30714568 JRNL DOI 10.7554/ELIFE.41124 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 13963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2001 - 4.1028 0.98 3187 168 0.2202 0.2519 REMARK 3 2 4.1028 - 3.2570 0.98 3177 163 0.2417 0.3099 REMARK 3 3 3.2570 - 2.8455 0.92 2946 149 0.2563 0.2836 REMARK 3 4 2.8455 - 2.5854 0.76 2431 135 0.2858 0.3246 REMARK 3 5 2.5854 - 2.4001 0.47 1521 86 0.2602 0.3299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3210 REMARK 3 ANGLE : 0.419 4338 REMARK 3 CHIRALITY : 0.036 518 REMARK 3 PLANARITY : 0.004 527 REMARK 3 DIHEDRAL : 14.736 1876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5236 -49.3619 11.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.3317 T22: 0.5608 REMARK 3 T33: 0.3372 T12: 0.0131 REMARK 3 T13: -0.0080 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.8726 L22: 1.3889 REMARK 3 L33: 1.6314 L12: 1.4297 REMARK 3 L13: 1.8366 L23: 0.5768 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.0444 S13: 0.0265 REMARK 3 S21: 0.1746 S22: -0.1145 S23: -0.0555 REMARK 3 S31: -0.0667 S32: 0.0437 S33: 0.0369 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4198 -48.9689 28.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.5306 T22: 0.5604 REMARK 3 T33: 0.4748 T12: 0.0212 REMARK 3 T13: -0.1425 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.7189 L22: 1.8695 REMARK 3 L33: 1.4228 L12: 2.0403 REMARK 3 L13: 0.4416 L23: 0.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.6899 S12: -0.6018 S13: 0.0507 REMARK 3 S21: 0.8555 S22: -0.3427 S23: -0.1116 REMARK 3 S31: 0.2644 S32: 0.0634 S33: -0.1165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7064 -54.9992 9.1279 REMARK 3 T TENSOR REMARK 3 T11: 0.3376 T22: 0.3886 REMARK 3 T33: 0.2100 T12: 0.0284 REMARK 3 T13: -0.0041 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 3.5656 L22: 2.4269 REMARK 3 L33: 2.6234 L12: 0.7431 REMARK 3 L13: 0.9801 L23: -0.3237 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.1446 S13: 0.1037 REMARK 3 S21: 0.0379 S22: -0.0060 S23: 0.0343 REMARK 3 S31: 0.1626 S32: 0.2220 S33: 0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2346 -53.7058 19.4946 REMARK 3 T TENSOR REMARK 3 T11: 0.4225 T22: 0.5619 REMARK 3 T33: 0.3752 T12: 0.0658 REMARK 3 T13: -0.0363 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.2649 L22: 2.6820 REMARK 3 L33: 2.7495 L12: 2.4820 REMARK 3 L13: 0.2893 L23: -0.0710 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: -0.4038 S13: -0.1839 REMARK 3 S21: -0.1381 S22: -0.0308 S23: 0.2089 REMARK 3 S31: 0.1869 S32: -0.4895 S33: -0.0070 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2627 -43.3728 30.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.7993 REMARK 3 T33: 0.5247 T12: 0.0436 REMARK 3 T13: -0.0755 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.5726 L22: 6.1470 REMARK 3 L33: 5.1098 L12: 4.1992 REMARK 3 L13: -1.4677 L23: 0.2545 REMARK 3 S TENSOR REMARK 3 S11: 0.6209 S12: 0.7127 S13: 0.0260 REMARK 3 S21: -0.0175 S22: -0.2639 S23: 0.9974 REMARK 3 S31: 0.1690 S32: -0.2524 S33: -0.2962 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8504 -37.5324 7.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.4952 T22: 0.4322 REMARK 3 T33: 0.3174 T12: -0.1453 REMARK 3 T13: -0.0632 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 7.1820 L22: 3.7809 REMARK 3 L33: 3.7500 L12: -3.0727 REMARK 3 L13: 0.5532 L23: -0.2635 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.8606 S13: 0.0333 REMARK 3 S21: -0.1670 S22: -0.0233 S23: -0.0938 REMARK 3 S31: -0.7281 S32: 0.5983 S33: -0.0085 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.18590 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48240 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SUCCINIC ACID, 10 MM SPERMIDINE, REMARK 280 5 MM MNCL2, 100 MM MES, 28% PEG400, PH 6.0, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.87900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.19450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.87900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.19450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 MET A 34 REMARK 465 ARG A 35 REMARK 465 GLY A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 124 NH1 ARG A 352 2.12 REMARK 500 OD2 ASP A 56 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 73 0.33 -65.62 REMARK 500 PRO A 210 81.13 -63.42 REMARK 500 THR A 228 -51.50 -140.03 REMARK 500 ASN A 290 79.00 56.51 REMARK 500 ASN A 293 74.49 55.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 504 REMARK 610 OLC A 505 REMARK 610 OLC A 506 REMARK 610 OLC A 507 REMARK 610 OLC A 508 REMARK 610 OLC A 509 REMARK 610 OLC A 510 REMARK 610 OLC A 511 REMARK 610 OLC A 512 REMARK 610 OLC A 513 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 53 O REMARK 620 2 HOH A 624 O 159.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 287 NE2 REMARK 620 2 HIS A 287 NE2 0.0 REMARK 620 3 HOH A 629 O 72.6 72.6 REMARK 620 4 HOH A 629 O 94.8 94.8 102.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 513 DBREF 6BU5 A 35 436 UNP Q9RTP8 MNTH_DEIRA 35 436 SEQADV 6BU5 MET A 25 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 26 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 27 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 28 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 29 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 30 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 31 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 32 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 HIS A 33 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 MET A 34 UNP Q9RTP8 EXPRESSION TAG SEQADV 6BU5 TRP A 223 UNP Q9RTP8 GLY 223 ENGINEERED MUTATION SEQRES 1 A 412 MET HIS HIS HIS HIS HIS HIS HIS HIS MET ARG GLY VAL SEQRES 2 A 412 ARG ARG ILE LEU PRO PHE LEU GLY PRO ALA VAL ILE ALA SEQRES 3 A 412 SER ILE ALA TYR MET ASP PRO GLY ASN PHE ALA THR ASN SEQRES 4 A 412 ILE GLU GLY GLY ALA ARG TYR GLY TYR SER LEU LEU TRP SEQRES 5 A 412 VAL ILE LEU ALA ALA ASN LEU MET ALA MET VAL ILE GLN SEQRES 6 A 412 ASN LEU SER ALA ASN LEU GLY ILE ALA SER GLY ARG ASN SEQRES 7 A 412 LEU PRO GLU LEU ILE ARG GLU ARG TRP PRO ARG PRO LEU SEQRES 8 A 412 VAL TRP PHE TYR TRP ILE GLN ALA GLU LEU VAL ALA MET SEQRES 9 A 412 ALA THR ASP LEU ALA GLU PHE LEU GLY ALA ALA LEU ALA SEQRES 10 A 412 ILE GLN LEU LEU THR GLY LEU PRO MET PHE TRP GLY ALA SEQRES 11 A 412 VAL VAL THR GLY VAL VAL THR PHE TRP LEU LEU ASN LEU SEQRES 12 A 412 GLN LYS ARG GLY THR ARG PRO LEU GLU LEU ALA VAL GLY SEQRES 13 A 412 ALA PHE VAL LEU MET ILE GLY VAL ALA TYR LEU VAL GLN SEQRES 14 A 412 VAL VAL LEU ALA ARG PRO ASP LEU ALA ALA VAL GLY ALA SEQRES 15 A 412 GLY PHE VAL PRO ARG LEU GLN GLY PRO GLY SER ALA TYR SEQRES 16 A 412 LEU ALA VAL TRP ILE ILE GLY ALA THR VAL MET PRO HIS SEQRES 17 A 412 VAL ILE TYR LEU HIS SER ALA LEU THR GLN GLY ARG ILE SEQRES 18 A 412 GLN THR ASP THR THR GLU GLU LYS ARG ARG LEU VAL ARG SEQRES 19 A 412 LEU ASN ARG VAL ASP VAL ILE ALA ALA MET GLY LEU ALA SEQRES 20 A 412 GLY LEU ILE ASN MET SER MET LEU ALA VAL ALA ALA ALA SEQRES 21 A 412 THR PHE HIS GLY LYS ASN VAL GLU ASN ALA GLY ASP LEU SEQRES 22 A 412 THR THR ALA TYR GLN THR LEU THR PRO LEU LEU GLY PRO SEQRES 23 A 412 ALA ALA SER VAL LEU PHE ALA VAL ALA LEU LEU ALA SER SEQRES 24 A 412 GLY LEU SER SER SER ALA VAL GLY THR MET ALA GLY ASP SEQRES 25 A 412 VAL ILE MET GLN GLY PHE MET GLY PHE HIS ILE PRO LEU SEQRES 26 A 412 TRP LEU ARG ARG LEU ILE THR MET LEU PRO ALA PHE ILE SEQRES 27 A 412 VAL ILE LEU LEU GLY MET ASP PRO SER SER VAL LEU ILE SEQRES 28 A 412 LEU SER GLN VAL ILE LEU CYS PHE GLY VAL PRO PHE ALA SEQRES 29 A 412 LEU VAL PRO LEU LEU LEU PHE THR ALA ARG ARG ASP VAL SEQRES 30 A 412 MET GLY ALA LEU VAL THR ARG ARG SER PHE THR VAL ILE SEQRES 31 A 412 GLY TRP VAL ILE ALA VAL ILE ILE ILE ALA LEU ASN GLY SEQRES 32 A 412 TYR LEU LEU TRP GLU LEU LEU GLY GLY HET MN A 501 1 HET MN A 502 1 HET SPD A 503 10 HET OLC A 504 18 HET OLC A 505 17 HET OLC A 506 7 HET OLC A 507 8 HET OLC A 508 15 HET OLC A 509 11 HET OLC A 510 14 HET OLC A 511 16 HET OLC A 512 9 HET OLC A 513 16 HETNAM MN MANGANESE (II) ION HETNAM SPD SPERMIDINE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 MN 2(MN 2+) FORMUL 4 SPD C7 H19 N3 FORMUL 5 OLC 10(C21 H40 O4) FORMUL 15 HOH *64(H2 O) HELIX 1 AA1 PHE A 43 ILE A 52 1 10 HELIX 2 AA2 ALA A 53 MET A 55 5 3 HELIX 3 AA3 ASP A 56 GLY A 71 1 16 HELIX 4 AA4 LEU A 74 GLY A 100 1 27 HELIX 5 AA5 ASN A 102 TRP A 111 1 10 HELIX 6 AA6 PRO A 112 GLY A 147 1 36 HELIX 7 AA7 PRO A 149 GLY A 171 1 23 HELIX 8 AA8 GLY A 171 ARG A 198 1 28 HELIX 9 AA9 ASP A 200 GLY A 207 1 8 HELIX 10 AB1 GLN A 213 ALA A 227 1 15 HELIX 11 AB2 MET A 230 GLN A 242 1 13 HELIX 12 AB3 THR A 250 HIS A 287 1 38 HELIX 13 AB4 ASP A 296 LEU A 308 1 13 HELIX 14 AB5 GLY A 309 GLY A 344 1 36 HELIX 15 AB6 PRO A 348 MET A 357 1 10 HELIX 16 AB7 MET A 357 GLY A 367 1 11 HELIX 17 AB8 ASP A 369 THR A 396 1 28 HELIX 18 AB9 ARG A 398 GLY A 403 1 6 HELIX 19 AC1 ARG A 408 LEU A 434 1 27 LINK O ALA A 53 MN MN A 501 1555 1555 2.03 LINK NE2 HIS A 287 MN MN A 502 1555 1555 2.48 LINK NE2 HIS A 287 MN MN A 502 1555 2455 2.48 LINK MN MN A 501 O HOH A 624 1555 1555 2.66 LINK MN MN A 502 O HOH A 629 1555 1555 2.23 LINK MN MN A 502 O HOH A 629 1555 2455 2.23 SITE 1 AC1 7 ALA A 53 TYR A 54 ASP A 56 ASN A 59 SITE 2 AC1 7 MET A 230 HOH A 624 HOH A 633 SITE 1 AC2 2 HIS A 287 HOH A 629 SITE 1 AC3 4 GLU A 65 TRP A 223 GLY A 295 SER A 371 SITE 1 AC4 7 ARG A 409 THR A 412 VAL A 413 TRP A 416 SITE 2 AC4 7 VAL A 420 OLC A 510 OLC A 513 SITE 1 AC5 8 PRO A 114 PHE A 118 LEU A 144 LEU A 145 SITE 2 AC5 8 TYR A 301 VAL A 314 OLC A 508 HOH A 613 SITE 1 AC6 3 LEU A 44 GLU A 176 LEU A 177 SITE 1 AC7 2 VAL A 159 TRP A 163 SITE 1 AC8 5 ALA A 181 PHE A 182 MET A 185 LEU A 376 SITE 2 AC8 5 OLC A 505 SITE 1 AC9 2 LEU A 433 GLY A 436 SITE 1 AD1 4 LEU A 394 OLC A 504 HOH A 602 HOH A 642 SITE 1 AD2 4 ARG A 409 SER A 410 VAL A 413 OLC A 513 SITE 1 AD3 2 MET A 357 PHE A 361 SITE 1 AD4 4 VAL A 195 ARG A 409 OLC A 504 OLC A 511 CRYST1 105.758 80.389 51.754 90.00 94.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009456 0.000000 0.000781 0.00000 SCALE2 0.000000 0.012440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019388 0.00000