HEADER TRANSFERASE 11-DEC-17 6BUU TITLE CRYSTAL STRUCTURE OF AKT1 (AA 144-480) WITH A BISUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-ALPHA SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE B,PKB,PROTEIN KINASE B ALPHA,PKB ALPHA,PROTO- COMPND 5 ONCOGENE C-AKT,RAC-PK-ALPHA; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLY-ARG-PRO-ARG-THR-THR-ZXW-PHE-ALA-GLU; COMPND 10 CHAIN: F, G; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKT1, PKB, RAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA AFF. FRUGIPERDA 2 RZ-2014; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1491790; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS AKT1, RAC-ALPHA SERINE/THERONINE-PROTEIN KINASE, KINASE, KEYWDS 2 PHOSPHORYLATED TAIL, SEMI-SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CHU,S.B.GABELLI,P.A.COLE REVDAT 5 15-NOV-23 6BUU 1 LINK REVDAT 4 04-OCT-23 6BUU 1 REMARK REVDAT 3 04-DEC-19 6BUU 1 REMARK REVDAT 2 05-SEP-18 6BUU 1 REMARK REVDAT 1 22-AUG-18 6BUU 0 JRNL AUTH N.CHU,A.L.SALGUERO,A.Z.LIU,Z.CHEN,D.R.DEMPSEY,S.B.FICARRO, JRNL AUTH 2 W.M.ALEXANDER,J.A.MARTO,Y.LI,L.M.AMZEL,S.B.GABELLI,P.A.COLE JRNL TITL AKT KINASE ACTIVATION MECHANISMS REVEALED USING PROTEIN JRNL TITL 2 SEMISYNTHESIS. JRNL REF CELL V. 174 897 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30078705 JRNL DOI 10.1016/J.CELL.2018.07.003 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 28033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.510 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5687 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5347 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7679 ; 1.961 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12330 ; 1.039 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 7.986 ; 5.015 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;34.426 ;23.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1011 ;16.100 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6284 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1346 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6BUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0135 REMARK 200 STARTING MODEL: 4EKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3000, 0.1M HEPES HCL, 0.2M REMARK 280 AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.13350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 451 REMARK 465 PRO A 452 REMARK 465 ASP A 453 REMARK 465 GLN A 454 REMARK 465 ASP A 455 REMARK 465 ASP A 456 REMARK 465 SER A 457 REMARK 465 MET A 458 REMARK 465 GLU A 459 REMARK 465 CYS A 460 REMARK 465 VAL A 461 REMARK 465 ASP A 462 REMARK 465 THR A 479 REMARK 465 ALA A 480 REMARK 465 ILE B 449 REMARK 465 THR B 450 REMARK 465 PRO B 451 REMARK 465 PRO B 452 REMARK 465 ASP B 453 REMARK 465 GLN B 454 REMARK 465 ASP B 455 REMARK 465 ASP B 456 REMARK 465 SER B 457 REMARK 465 MET B 458 REMARK 465 GLU B 459 REMARK 465 CYS B 460 REMARK 465 VAL B 461 REMARK 465 ASP B 462 REMARK 465 SER B 463 REMARK 465 GLY B 478 REMARK 465 THR B 479 REMARK 465 ALA B 480 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 30.88 -93.80 REMARK 500 ARG A 273 -10.93 65.34 REMARK 500 ASP A 292 103.36 63.43 REMARK 500 ASP A 302 -137.24 58.80 REMARK 500 ASP A 325 133.42 80.58 REMARK 500 ASP A 325 133.42 93.74 REMARK 500 ASP A 398 -128.89 53.44 REMARK 500 GLN A 428 59.74 -93.90 REMARK 500 PRO A 467 -176.07 -69.15 REMARK 500 SEP A 477 1.73 113.18 REMARK 500 ARG B 243 -63.78 56.48 REMARK 500 ARG B 273 -15.49 68.16 REMARK 500 ASP B 292 97.45 82.78 REMARK 500 ASP B 302 -126.91 62.07 REMARK 500 ASP B 325 143.63 76.52 REMARK 500 ASP B 398 -131.15 55.24 REMARK 500 SER B 431 -169.35 -172.61 REMARK 500 SER B 475 -103.98 -116.76 REMARK 500 ALA B 476 -100.37 -159.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 292 OD2 REMARK 620 2 ZXW F 7 O3A 120.2 REMARK 620 3 ZXW F 7 O2B 101.3 55.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 292 OD2 REMARK 620 2 ZXW G 7 O2B 90.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN G 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues ZXW F 7 through REMARK 800 PHE F 8 bound to THR F 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues ZXW G 7 through REMARK 800 PHE G 8 bound to THR G 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C01 RELATED DB: PDB REMARK 900 AKT1 123-480 DBREF 6BUU A 144 480 UNP P31749 AKT1_HUMAN 144 480 DBREF 6BUU B 144 480 UNP P31749 AKT1_HUMAN 144 480 DBREF 6BUU F 1 10 PDB 6BUU 6BUU 1 10 DBREF 6BUU G 1 10 PDB 6BUU 6BUU 1 10 SEQRES 1 A 337 ARG VAL THR MET ASN GLU PHE GLU TYR LEU LYS LEU LEU SEQRES 2 A 337 GLY LYS GLY THR PHE GLY LYS VAL ILE LEU VAL LYS GLU SEQRES 3 A 337 LYS ALA THR GLY ARG TYR TYR ALA MET LYS ILE LEU LYS SEQRES 4 A 337 LYS GLU VAL ILE VAL ALA LYS ASP GLU VAL ALA HIS THR SEQRES 5 A 337 LEU THR GLU ASN ARG VAL LEU GLN ASN SER ARG HIS PRO SEQRES 6 A 337 PHE LEU THR ALA LEU LYS TYR SER PHE GLN THR HIS ASP SEQRES 7 A 337 ARG LEU CYS PHE VAL MET GLU TYR ALA ASN GLY GLY GLU SEQRES 8 A 337 LEU PHE PHE HIS LEU SER ARG GLU ARG VAL PHE SER GLU SEQRES 9 A 337 ASP ARG ALA ARG PHE TYR GLY ALA GLU ILE VAL SER ALA SEQRES 10 A 337 LEU ASP TYR LEU HIS SER GLU LYS ASN VAL VAL TYR ARG SEQRES 11 A 337 ASP LEU LYS LEU GLU ASN LEU MET LEU ASP LYS ASP GLY SEQRES 12 A 337 HIS ILE LYS ILE THR ASP PHE GLY LEU CYS LYS GLU GLY SEQRES 13 A 337 ILE LYS ASP GLY ALA THR MET LYS TPO PHE CYS GLY THR SEQRES 14 A 337 PRO GLU TYR LEU ALA PRO GLU VAL LEU GLU ASP ASN ASP SEQRES 15 A 337 TYR GLY ARG ALA VAL ASP TRP TRP GLY LEU GLY VAL VAL SEQRES 16 A 337 MET TYR GLU MET MET CYS GLY ARG LEU PRO PHE TYR ASN SEQRES 17 A 337 GLN ASP HIS GLU LYS LEU PHE GLU LEU ILE LEU MET GLU SEQRES 18 A 337 GLU ILE ARG PHE PRO ARG THR LEU GLY PRO GLU ALA LYS SEQRES 19 A 337 SER LEU LEU SER GLY LEU LEU LYS LYS ASP PRO LYS GLN SEQRES 20 A 337 ARG LEU GLY GLY GLY SER GLU ASP ALA LYS GLU ILE MET SEQRES 21 A 337 GLN HIS ARG PHE PHE ALA GLY ILE VAL TRP GLN HIS VAL SEQRES 22 A 337 TYR GLU LYS LYS LEU SER PRO PRO PHE LYS PRO GLN VAL SEQRES 23 A 337 THR SER GLU THR ASP THR ARG TYR PHE ASP GLU GLU PHE SEQRES 24 A 337 THR ALA GLN MET ILE THR ILE THR PRO PRO ASP GLN ASP SEQRES 25 A 337 ASP SER MET GLU CYS VAL ASP SER GLU ARG ARG PRO HIS SEQRES 26 A 337 PHE PRO GLN PHE SEP TYR SER ALA SEP GLY THR ALA SEQRES 1 B 337 ARG VAL THR MET ASN GLU PHE GLU TYR LEU LYS LEU LEU SEQRES 2 B 337 GLY LYS GLY THR PHE GLY LYS VAL ILE LEU VAL LYS GLU SEQRES 3 B 337 LYS ALA THR GLY ARG TYR TYR ALA MET LYS ILE LEU LYS SEQRES 4 B 337 LYS GLU VAL ILE VAL ALA LYS ASP GLU VAL ALA HIS THR SEQRES 5 B 337 LEU THR GLU ASN ARG VAL LEU GLN ASN SER ARG HIS PRO SEQRES 6 B 337 PHE LEU THR ALA LEU LYS TYR SER PHE GLN THR HIS ASP SEQRES 7 B 337 ARG LEU CYS PHE VAL MET GLU TYR ALA ASN GLY GLY GLU SEQRES 8 B 337 LEU PHE PHE HIS LEU SER ARG GLU ARG VAL PHE SER GLU SEQRES 9 B 337 ASP ARG ALA ARG PHE TYR GLY ALA GLU ILE VAL SER ALA SEQRES 10 B 337 LEU ASP TYR LEU HIS SER GLU LYS ASN VAL VAL TYR ARG SEQRES 11 B 337 ASP LEU LYS LEU GLU ASN LEU MET LEU ASP LYS ASP GLY SEQRES 12 B 337 HIS ILE LYS ILE THR ASP PHE GLY LEU CYS LYS GLU GLY SEQRES 13 B 337 ILE LYS ASP GLY ALA THR MET LYS TPO PHE CYS GLY THR SEQRES 14 B 337 PRO GLU TYR LEU ALA PRO GLU VAL LEU GLU ASP ASN ASP SEQRES 15 B 337 TYR GLY ARG ALA VAL ASP TRP TRP GLY LEU GLY VAL VAL SEQRES 16 B 337 MET TYR GLU MET MET CYS GLY ARG LEU PRO PHE TYR ASN SEQRES 17 B 337 GLN ASP HIS GLU LYS LEU PHE GLU LEU ILE LEU MET GLU SEQRES 18 B 337 GLU ILE ARG PHE PRO ARG THR LEU GLY PRO GLU ALA LYS SEQRES 19 B 337 SER LEU LEU SER GLY LEU LEU LYS LYS ASP PRO LYS GLN SEQRES 20 B 337 ARG LEU GLY GLY GLY SER GLU ASP ALA LYS GLU ILE MET SEQRES 21 B 337 GLN HIS ARG PHE PHE ALA GLY ILE VAL TRP GLN HIS VAL SEQRES 22 B 337 TYR GLU LYS LYS LEU SER PRO PRO PHE LYS PRO GLN VAL SEQRES 23 B 337 THR SER GLU THR ASP THR ARG TYR PHE ASP GLU GLU PHE SEQRES 24 B 337 THR ALA GLN MET ILE THR ILE THR PRO PRO ASP GLN ASP SEQRES 25 B 337 ASP SER MET GLU CYS VAL ASP SER GLU ARG ARG PRO HIS SEQRES 26 B 337 PHE PRO GLN PHE SEP TYR SER ALA SEP GLY THR ALA SEQRES 1 F 10 GLY ARG PRO ARG THR THR ZXW PHE ALA GLU SEQRES 1 G 10 GLY ARG PRO ARG THR THR ZXW PHE ALA GLU MODRES 6BUU TPO A 308 THR MODIFIED RESIDUE MODRES 6BUU SEP A 473 SER MODIFIED RESIDUE MODRES 6BUU SEP A 477 SER MODIFIED RESIDUE MODRES 6BUU TPO B 308 THR MODIFIED RESIDUE MODRES 6BUU SEP B 473 SER MODIFIED RESIDUE MODRES 6BUU SEP B 477 SER MODIFIED RESIDUE HET TPO A 308 11 HET SEP A 473 10 HET SEP A 477 10 HET TPO B 308 11 HET SEP B 473 10 HET SEP B 477 10 HET ZXW F 7 40 HET ZXW G 7 40 HET SO4 A 501 5 HET MN F 501 1 HET MN G 501 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ZXW 5'-O-[(S)-{[(R)-{[(R)-[(2-{[(2S)-2-AMINO-3- HETNAM 2 ZXW OXOPROPYL]AMINO}-2-OXOETHYL)SULFANYL](HYDROXY) HETNAM 3 ZXW PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETNAM 4 ZXW PHOSPHORYL]ADENOSINE HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP 4(C3 H8 N O6 P) FORMUL 3 ZXW 2(C15 H24 N7 O14 P3 S) FORMUL 5 SO4 O4 S 2- FORMUL 6 MN 2(MN 2+) FORMUL 8 HOH *238(H2 O) HELIX 1 AA1 THR A 146 ASN A 148 5 3 HELIX 2 AA2 LYS A 183 LYS A 189 1 7 HELIX 3 AA3 GLU A 191 ASN A 204 1 14 HELIX 4 AA4 GLU A 234 SER A 240 1 7 HELIX 5 AA5 SER A 246 ASN A 269 1 24 HELIX 6 AA6 LYS A 276 GLU A 278 5 3 HELIX 7 AA7 THR A 312 LEU A 316 5 5 HELIX 8 AA8 ALA A 317 GLU A 322 1 6 HELIX 9 AA9 ALA A 329 GLY A 345 1 17 HELIX 10 AB1 ASP A 353 GLU A 364 1 12 HELIX 11 AB2 GLY A 373 LEU A 384 1 12 HELIX 12 AB3 ASP A 387 ARG A 391 5 5 HELIX 13 AB4 ASP A 398 GLN A 404 1 7 HELIX 14 AB5 HIS A 405 ALA A 409 5 5 HELIX 15 AB6 VAL A 412 GLU A 418 1 7 HELIX 16 AB7 ASP A 439 ALA A 444 1 6 HELIX 17 AB8 THR B 146 ASN B 148 5 3 HELIX 18 AB9 LYS B 183 LYS B 189 1 7 HELIX 19 AC1 GLU B 191 ASN B 204 1 14 HELIX 20 AC2 LEU B 235 ARG B 243 1 9 HELIX 21 AC3 SER B 246 GLU B 267 1 22 HELIX 22 AC4 LYS B 276 GLU B 278 5 3 HELIX 23 AC5 THR B 312 LEU B 316 5 5 HELIX 24 AC6 ALA B 317 ASP B 323 1 7 HELIX 25 AC7 ALA B 329 GLY B 345 1 17 HELIX 26 AC8 ASP B 353 GLU B 364 1 12 HELIX 27 AC9 GLY B 373 LEU B 384 1 12 HELIX 28 AD1 ASP B 398 GLN B 404 1 7 HELIX 29 AD2 HIS B 405 ALA B 409 5 5 HELIX 30 AD3 VAL B 412 GLU B 418 1 7 HELIX 31 AD4 ASP B 439 ALA B 444 1 6 SHEET 1 AA1 6 PHE A 150 LYS A 158 0 SHEET 2 AA1 6 LYS A 163 GLU A 169 -1 O VAL A 164 N GLY A 157 SHEET 3 AA1 6 TYR A 175 LYS A 182 -1 O TYR A 176 N VAL A 167 SHEET 4 AA1 6 ARG A 222 MET A 227 -1 O MET A 227 N ALA A 177 SHEET 5 AA1 6 LEU A 213 GLN A 218 -1 N TYR A 215 O VAL A 226 SHEET 6 AA1 6 TYR A 474 SER A 475 -1 O TYR A 474 N SER A 216 SHEET 1 AA2 2 LEU A 280 LEU A 282 0 SHEET 2 AA2 2 ILE A 288 ILE A 290 -1 O LYS A 289 N MET A 281 SHEET 1 AA3 2 CYS A 310 GLY A 311 0 SHEET 2 AA3 2 PHE F 8 ALA F 9 -1 O PHE F 8 N GLY A 311 SHEET 1 AA4 5 PHE B 150 LYS B 158 0 SHEET 2 AA4 5 LYS B 163 GLU B 169 -1 O VAL B 164 N GLY B 157 SHEET 3 AA4 5 TYR B 175 LYS B 182 -1 O TYR B 176 N VAL B 167 SHEET 4 AA4 5 ARG B 222 MET B 227 -1 O MET B 227 N ALA B 177 SHEET 5 AA4 5 LEU B 213 GLN B 218 -1 N TYR B 215 O VAL B 226 SHEET 1 AA5 3 GLY B 233 GLU B 234 0 SHEET 2 AA5 3 LEU B 280 LEU B 282 -1 O LEU B 282 N GLY B 233 SHEET 3 AA5 3 ILE B 288 ILE B 290 -1 O LYS B 289 N MET B 281 SHEET 1 AA6 2 CYS B 310 GLY B 311 0 SHEET 2 AA6 2 PHE G 8 ALA G 9 -1 O PHE G 8 N GLY B 311 LINK C LYS A 307 N TPO A 308 1555 1555 1.32 LINK C TPO A 308 N PHE A 309 1555 1555 1.34 LINK C PHE A 472 N SEP A 473 1555 1555 1.33 LINK C SEP A 473 N TYR A 474 1555 1555 1.33 LINK C ALA A 476 N SEP A 477 1555 1555 1.33 LINK C SEP A 477 N GLY A 478 1555 1555 1.33 LINK C LYS B 307 N TPO B 308 1555 1555 1.33 LINK C TPO B 308 N PHE B 309 1555 1555 1.34 LINK C PHE B 472 N SEP B 473 1555 1555 1.33 LINK C SEP B 473 N TYR B 474 1555 1555 1.34 LINK C ALA B 476 N SEP B 477 1555 1555 1.34 LINK C THR F 6 N ZXW F 7 1555 1555 1.32 LINK C ZXW F 7 N PHE F 8 1555 1555 1.33 LINK C THR G 6 N ZXW G 7 1555 1555 1.32 LINK C ZXW G 7 N PHE G 8 1555 1555 1.31 LINK OD2 ASP A 292 MN MN F 501 1555 1555 2.17 LINK OD2 ASP B 292 MN MN G 501 1555 1555 2.30 LINK O3A ZXW F 7 MN MN F 501 1555 1555 2.75 LINK O2B ZXW F 7 MN MN F 501 1555 1555 2.47 LINK O2B ZXW G 7 MN MN G 501 1555 1555 1.73 SITE 1 AC1 2 ASN A 351 GLN A 352 SITE 1 AC2 2 ASP A 292 ZXW F 7 SITE 1 AC3 3 ASN B 279 ASP B 292 ZXW G 7 SITE 1 AC4 21 GLY A 159 THR A 160 VAL A 164 LYS A 179 SITE 2 AC4 21 GLU A 228 ALA A 230 GLU A 234 ASP A 274 SITE 3 AC4 21 LYS A 276 MET A 281 ASP A 292 PHE A 309 SITE 4 AC4 21 CYS A 310 GLY A 311 THR A 312 PHE A 438 SITE 5 AC4 21 ARG F 4 THR F 6 ALA F 9 MN F 501 SITE 6 AC4 21 HOH F 601 SITE 1 AC5 23 GLY B 159 THR B 160 VAL B 164 ALA B 177 SITE 2 AC5 23 LYS B 179 GLU B 228 ALA B 230 GLU B 234 SITE 3 AC5 23 ASP B 274 LYS B 276 MET B 281 ASP B 292 SITE 4 AC5 23 LEU B 295 PHE B 309 CYS B 310 GLY B 311 SITE 5 AC5 23 THR B 312 PHE B 438 THR G 6 ALA G 9 SITE 6 AC5 23 MN G 501 HOH G 601 HOH G 603 CRYST1 86.628 56.267 91.837 90.00 105.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011544 0.000000 0.003115 0.00000 SCALE2 0.000000 0.017772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011278 0.00000