HEADER GENE REGULATION 12-DEC-17 6BVB TITLE CRYSTAL STRUCTURE OF HIF-2ALPHA-PVHL-ELONGIN B-ELONGIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 3 CHAIN: V; COMPND 4 SYNONYM: PROTEIN G7,PVHL; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGIN-B; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 10 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 11 POLYPEPTIDE 2; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ELONGIN-C; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 17 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 18 POLYPEPTIDE 1; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 2 ALPHA; COMPND 22 CHAIN: H; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VHL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ELOB, TCEB2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: ELOC, TCEB1; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 25 MOL_ID: 4; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_TAXID: 9606 KEYWDS E3 UBIQUITIN LIGASE, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.TARADE,M.OHH,J.E.LEE REVDAT 4 04-OCT-23 6BVB 1 REMARK REVDAT 3 08-JAN-20 6BVB 1 REMARK REVDAT 2 05-SEP-18 6BVB 1 SOURCE JRNL REVDAT 1 01-AUG-18 6BVB 0 JRNL AUTH D.TARADE,C.M.ROBINSON,J.E.LEE,M.OHH JRNL TITL HIF-2 ALPHA-PVHL COMPLEX REVEALS BROAD GENOTYPE-PHENOTYPE JRNL TITL 2 CORRELATIONS IN HIF-2 ALPHA-DRIVEN DISEASE. JRNL REF NAT COMMUN V. 9 3359 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30135421 JRNL DOI 10.1038/S41467-018-05554-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3215 - 4.4513 1.00 2958 156 0.1783 0.2069 REMARK 3 2 4.4513 - 3.5335 1.00 2760 146 0.1589 0.2051 REMARK 3 3 3.5335 - 3.0869 1.00 2746 144 0.2117 0.2618 REMARK 3 4 3.0869 - 2.8047 1.00 2688 141 0.2238 0.2432 REMARK 3 5 2.8047 - 2.6037 1.00 2670 141 0.2160 0.2696 REMARK 3 6 2.6037 - 2.4502 1.00 2686 142 0.2108 0.2573 REMARK 3 7 2.4502 - 2.3275 1.00 2657 139 0.2062 0.2304 REMARK 3 8 2.3275 - 2.2262 1.00 2607 137 0.2187 0.2408 REMARK 3 9 2.2262 - 2.1405 1.00 2658 140 0.2334 0.3173 REMARK 3 10 2.1405 - 2.0666 0.99 2612 138 0.2740 0.2593 REMARK 3 11 2.0666 - 2.0020 0.93 2452 129 0.2986 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2861 REMARK 3 ANGLE : 1.094 3900 REMARK 3 CHIRALITY : 0.061 451 REMARK 3 PLANARITY : 0.008 505 REMARK 3 DIHEDRAL : 15.271 1740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2618 35.4697 101.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.3270 T22: 0.2161 REMARK 3 T33: 0.3504 T12: -0.0227 REMARK 3 T13: 0.0515 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 5.9293 L22: 7.1715 REMARK 3 L33: 6.4362 L12: -1.4719 REMARK 3 L13: 0.7662 L23: -2.1445 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: -0.2251 S13: 0.2325 REMARK 3 S21: -0.3677 S22: -0.0560 S23: -0.0288 REMARK 3 S31: -0.1897 S32: 0.1846 S33: -0.0975 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 19:62) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1793 42.3007 96.3569 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.2385 REMARK 3 T33: 0.3729 T12: 0.0191 REMARK 3 T13: 0.1154 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 4.7451 L22: 6.1759 REMARK 3 L33: 5.6223 L12: -1.4549 REMARK 3 L13: 2.3299 L23: 0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.2603 S12: 0.0328 S13: 0.2878 REMARK 3 S21: -0.5152 S22: -0.1253 S23: -0.5433 REMARK 3 S31: -0.1925 S32: -0.1209 S33: -0.0878 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 63:68) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0114 30.2512 108.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.6251 REMARK 3 T33: 0.5997 T12: -0.0362 REMARK 3 T13: 0.0689 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 4.9846 L22: 6.4817 REMARK 3 L33: 7.8391 L12: 4.9377 REMARK 3 L13: -1.3009 L23: -4.7423 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.0593 S13: -0.7980 REMARK 3 S21: 0.1915 S22: 0.4040 S23: 1.1174 REMARK 3 S31: 0.2424 S32: -2.1822 S33: -0.5004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 69:106) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3925 25.9501 96.4886 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.3317 REMARK 3 T33: 0.2802 T12: -0.0291 REMARK 3 T13: 0.0018 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.7646 L22: 1.0871 REMARK 3 L33: 2.2716 L12: -1.1909 REMARK 3 L13: -0.5761 L23: 1.3613 REMARK 3 S TENSOR REMARK 3 S11: 0.2138 S12: 0.3117 S13: 0.1630 REMARK 3 S21: -0.1600 S22: -0.0460 S23: 0.0501 REMARK 3 S31: 0.0381 S32: 0.0167 S33: -0.0727 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 17:34) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4337 36.1296 104.4895 REMARK 3 T TENSOR REMARK 3 T11: 0.4054 T22: 0.2880 REMARK 3 T33: 0.4045 T12: -0.0611 REMARK 3 T13: 0.1063 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 7.3566 L22: 4.2794 REMARK 3 L33: 9.0541 L12: -1.9873 REMARK 3 L13: -0.0458 L23: 5.7322 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: 0.0898 S13: 0.4637 REMARK 3 S21: -0.1969 S22: -0.2369 S23: -0.1965 REMARK 3 S31: -0.6950 S32: -0.2251 S33: 0.0854 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 35:57) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0381 37.9958 115.0659 REMARK 3 T TENSOR REMARK 3 T11: 0.3818 T22: 0.3634 REMARK 3 T33: 0.4264 T12: -0.0944 REMARK 3 T13: 0.0034 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 5.9622 L22: 6.4443 REMARK 3 L33: 3.5220 L12: 2.6104 REMARK 3 L13: 2.4064 L23: 2.1175 REMARK 3 S TENSOR REMARK 3 S11: 0.2447 S12: -0.0628 S13: 0.4038 REMARK 3 S21: 0.1703 S22: -0.0015 S23: -0.2507 REMARK 3 S31: -0.4489 S32: 0.3392 S33: -0.2136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESID 58:112) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0666 26.3474 111.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3167 REMARK 3 T33: 0.3031 T12: -0.0598 REMARK 3 T13: -0.0041 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.4823 L22: 2.4452 REMARK 3 L33: 3.5086 L12: -0.5540 REMARK 3 L13: -0.3005 L23: 0.2805 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.1614 S13: 0.1698 REMARK 3 S21: 0.0411 S22: 0.0784 S23: -0.1712 REMARK 3 S31: 0.0049 S32: 0.2595 S33: -0.1283 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN H AND RESID 527:540) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1243 11.5030 139.2792 REMARK 3 T TENSOR REMARK 3 T11: 0.4558 T22: 0.4860 REMARK 3 T33: 0.6968 T12: 0.0047 REMARK 3 T13: 0.1081 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 8.1244 L22: 9.6046 REMARK 3 L33: 6.9460 L12: 2.8002 REMARK 3 L13: 4.2125 L23: 2.8653 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1818 S13: -0.5149 REMARK 3 S21: -0.4695 S22: 0.1416 S23: 1.2796 REMARK 3 S31: -0.2047 S32: -0.4379 S33: 0.1726 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN V AND RESID 59:105) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9593 15.8134 138.4821 REMARK 3 T TENSOR REMARK 3 T11: 0.4478 T22: 0.3136 REMARK 3 T33: 0.3246 T12: -0.1257 REMARK 3 T13: 0.0213 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 4.0822 L22: 1.6965 REMARK 3 L33: 4.0110 L12: 0.3863 REMARK 3 L13: -0.6743 L23: 0.7076 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.4041 S13: -0.2728 REMARK 3 S21: 0.3528 S22: -0.0415 S23: 0.1492 REMARK 3 S31: 0.3690 S32: -0.3533 S33: 0.0652 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN V AND RESID 106:141) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0714 19.5544 136.3533 REMARK 3 T TENSOR REMARK 3 T11: 0.3789 T22: 0.3551 REMARK 3 T33: 0.3409 T12: -0.1447 REMARK 3 T13: 0.0144 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 6.3564 L22: 3.1782 REMARK 3 L33: 7.7533 L12: -0.5390 REMARK 3 L13: -5.5227 L23: 1.4606 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.2536 S13: 0.0046 REMARK 3 S21: 0.3100 S22: -0.1047 S23: 0.2003 REMARK 3 S31: 0.0777 S32: -0.0488 S33: 0.0539 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN V AND RESID 142:193) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4722 15.3931 122.4778 REMARK 3 T TENSOR REMARK 3 T11: 0.4332 T22: 0.3561 REMARK 3 T33: 0.3201 T12: -0.0526 REMARK 3 T13: -0.0512 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.1469 L22: 2.4828 REMARK 3 L33: 4.3678 L12: -2.2843 REMARK 3 L13: -1.9313 L23: 1.1961 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.2339 S13: -0.1732 REMARK 3 S21: 0.1914 S22: -0.0574 S23: 0.0391 REMARK 3 S31: 0.5152 S32: 0.4460 S33: 0.0689 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN V AND RESID 194:209) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4512 23.1415 140.2737 REMARK 3 T TENSOR REMARK 3 T11: 0.4001 T22: 0.6209 REMARK 3 T33: 0.4615 T12: -0.0304 REMARK 3 T13: -0.0275 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 3.4313 L22: 9.7081 REMARK 3 L33: 7.1459 L12: 4.4622 REMARK 3 L13: 2.6321 L23: 0.1098 REMARK 3 S TENSOR REMARK 3 S11: -0.6581 S12: 1.0402 S13: 0.7828 REMARK 3 S21: -0.4628 S22: 0.9676 S23: 0.3052 REMARK 3 S31: -0.2208 S32: 0.0614 S33: -0.4023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28339 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.002 REMARK 200 RESOLUTION RANGE LOW (A) : 48.307 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.540 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.81 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1LM8 REMARK 200 REMARK 200 REMARK: TRAPEZOIDAL PLATES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% (V/V) PEG-3350, 0.2 M LI2SO4, 0.1 REMARK 280 M BIS-TRIS. 7 MG/ML PROTEIN COMPLEX., PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.88500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 184.57500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.52500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 184.57500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.52500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, B, C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY V 52 REMARK 465 SER V 53 REMARK 465 MET V 54 REMARK 465 GLU V 55 REMARK 465 ALA V 56 REMARK 465 GLY V 57 REMARK 465 ARG V 58 REMARK 465 ARG V 210 REMARK 465 MET V 211 REMARK 465 GLY V 212 REMARK 465 ASP V 213 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 GLY C 50 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 ALA C 53 REMARK 465 GLU C 54 REMARK 465 ASN C 55 REMARK 465 GLU C 56 REMARK 465 GLU H 523 REMARK 465 LEU H 524 REMARK 465 ASP H 525 REMARK 465 LEU H 526 REMARK 465 LEU H 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO V 59 CG CD REMARK 470 ARG V 60 CG CD NE CZ NH1 NH2 REMARK 470 GLN V 73 CG CD OE1 NE2 REMARK 470 ARG V 108 CG CD NE CZ NH1 NH2 REMARK 470 VAL V 142 CG1 CG2 REMARK 470 ASP V 143 CG OD1 OD2 REMARK 470 GLN V 145 CG CD OE1 NE2 REMARK 470 LYS V 171 CG CD CE NZ REMARK 470 ARG V 177 CG CD NE CZ NH1 NH2 REMARK 470 ARG V 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU V 186 CG CD OE1 OE2 REMARK 470 GLN V 195 CG CD OE1 NE2 REMARK 470 GLU V 199 CG CD OE1 OE2 REMARK 470 GLN V 203 CG CD OE1 NE2 REMARK 470 GLN V 209 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLN B 106 CG CD OE1 NE2 REMARK 470 GLU H 527 CG CD OE1 OE2 REMARK 470 ASP H 539 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG V 79 42.17 -107.70 REMARK 500 ASN V 90 -167.95 -77.50 REMARK 500 SER V 111 -157.00 -117.64 REMARK 500 HIS B 10 -120.27 58.02 REMARK 500 ASP B 47 -126.67 55.58 REMARK 500 ALA B 71 66.23 -155.14 REMARK 500 ASP B 83 11.29 -156.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 80 ALA B 81 146.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 6BVB V 54 213 UNP P40337 VHL_HUMAN 1 160 DBREF 6BVB B 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 6BVB C 17 112 UNP Q15369 ELOC_HUMAN 17 112 DBREF 6BVB H 523 541 PDB 6BVB 6BVB 523 541 SEQADV 6BVB GLY V 52 UNP P40337 EXPRESSION TAG SEQADV 6BVB SER V 53 UNP P40337 EXPRESSION TAG SEQRES 1 V 162 GLY SER MET GLU ALA GLY ARG PRO ARG PRO VAL LEU ARG SEQRES 2 V 162 SER VAL ASN SER ARG GLU PRO SER GLN VAL ILE PHE CYS SEQRES 3 V 162 ASN ARG SER PRO ARG VAL VAL LEU PRO VAL TRP LEU ASN SEQRES 4 V 162 PHE ASP GLY GLU PRO GLN PRO TYR PRO THR LEU PRO PRO SEQRES 5 V 162 GLY THR GLY ARG ARG ILE HIS SER TYR ARG GLY HIS LEU SEQRES 6 V 162 TRP LEU PHE ARG ASP ALA GLY THR HIS ASP GLY LEU LEU SEQRES 7 V 162 VAL ASN GLN THR GLU LEU PHE VAL PRO SER LEU ASN VAL SEQRES 8 V 162 ASP GLY GLN PRO ILE PHE ALA ASN ILE THR LEU PRO VAL SEQRES 9 V 162 TYR THR LEU LYS GLU ARG CYS LEU GLN VAL VAL ARG SER SEQRES 10 V 162 LEU VAL LYS PRO GLU ASN TYR ARG ARG LEU ASP ILE VAL SEQRES 11 V 162 ARG SER LEU TYR GLU ASP LEU GLU ASP HIS PRO ASN VAL SEQRES 12 V 162 GLN LYS ASP LEU GLU ARG LEU THR GLN GLU ARG ILE ALA SEQRES 13 V 162 HIS GLN ARG MET GLY ASP SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 96 MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU PHE SEQRES 2 C 96 ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR ILE SEQRES 3 C 96 LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU ASN SEQRES 4 C 96 GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER HIS SEQRES 5 C 96 VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS VAL SEQRES 6 C 96 ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE PRO SEQRES 7 C 96 ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA ALA SEQRES 8 C 96 ASN PHE LEU ASP CYS SEQRES 1 H 19 GLU LEU ASP LEU GLU THR LEU ALA HYP TYR ILE PRO MET SEQRES 2 H 19 ASP GLY GLU ASP PHE LEU HET HYP H 531 15 HETNAM HYP 4-HYDROXYPROLINE HETSYN HYP HYDROXYPROLINE FORMUL 4 HYP C5 H9 N O3 FORMUL 5 HOH *102(H2 O) HELIX 1 AA1 THR V 157 VAL V 170 1 14 HELIX 2 AA2 LYS V 171 LEU V 178 5 8 HELIX 3 AA3 ARG V 182 ASP V 190 1 9 HELIX 4 AA4 ASN V 193 HIS V 208 1 16 HELIX 5 AA5 THR B 23 LYS B 36 1 14 HELIX 6 AA6 PRO B 38 ASP B 40 5 3 HELIX 7 AA7 LEU B 57 GLY B 61 5 5 HELIX 8 AA8 PRO B 100 LYS B 104 5 5 HELIX 9 AA9 ARG C 33 LEU C 37 1 5 HELIX 10 AB1 SER C 39 LEU C 46 1 8 HELIX 11 AB2 PRO C 66 THR C 84 1 19 HELIX 12 AB3 ALA C 96 ASP C 111 1 16 SHEET 1 AA1 4 GLY V 106 TYR V 112 0 SHEET 2 AA1 4 PRO V 71 ASN V 78 -1 N VAL V 74 O ILE V 109 SHEET 3 AA1 4 ILE V 147 THR V 152 1 O ALA V 149 N CYS V 77 SHEET 4 AA1 4 LEU V 129 VAL V 130 -1 N LEU V 129 O THR V 152 SHEET 1 AA2 3 PRO V 95 PRO V 97 0 SHEET 2 AA2 3 VAL V 84 LEU V 89 -1 N TRP V 88 O GLN V 96 SHEET 3 AA2 3 LEU V 116 ASP V 121 -1 O ARG V 120 N LEU V 85 SHEET 1 AA3 8 GLN B 49 LEU B 50 0 SHEET 2 AA3 8 GLN B 42 LYS B 46 -1 N LYS B 46 O GLN B 49 SHEET 3 AA3 8 ALA B 73 PHE B 79 -1 O GLY B 76 N TYR B 45 SHEET 4 AA3 8 ASP B 2 ARG B 9 1 N MET B 6 O VAL B 75 SHEET 5 AA3 8 THR B 12 LYS B 19 -1 O THR B 16 N LEU B 5 SHEET 6 AA3 8 GLU C 28 LYS C 32 1 O ILE C 30 N THR B 13 SHEET 7 AA3 8 TYR C 18 ILE C 22 -1 N LEU C 21 O PHE C 29 SHEET 8 AA3 8 ASN C 58 ASN C 61 1 O ASN C 58 N LYS C 20 LINK C ALA H 530 N HYP H 531 1555 1555 1.32 LINK C HYP H 531 N TYR H 532 1555 1555 1.32 CRYST1 59.770 59.770 246.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004063 0.00000