HEADER SIGNALING PROTEIN 13-DEC-17 6BVM TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: GTPASE HRAS; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,J.ABBOTT,S.W.FESIK REVDAT 4 15-NOV-23 6BVM 1 REMARK REVDAT 3 04-OCT-23 6BVM 1 LINK REVDAT 2 01-MAY-19 6BVM 1 JRNL REVDAT 1 24-OCT-18 6BVM 0 JRNL AUTH J.R.ABBOTT,T.R.HODGES,R.N.DANIELS,P.A.PATEL,J.P.KENNEDY, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,M.C.BURNS,J.SAI,T.SOBOLIK,Y.BEESETTY, JRNL AUTH 3 T.LEE,O.W.ROSSANESE,J.PHAN,A.G.WATERSON,S.W.FESIK JRNL TITL DISCOVERY OF AMINOPIPERIDINE INDOLES THAT ACTIVATE THE JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR SOS1 AND MODULATE RAS JRNL TITL 3 SIGNALING. JRNL REF J. MED. CHEM. V. 61 6002 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29856609 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00360 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12RC1_2801: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 141730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 6895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1133 - 5.5734 1.00 4826 207 0.1694 0.1722 REMARK 3 2 5.5734 - 4.4263 1.00 4673 179 0.1384 0.1466 REMARK 3 3 4.4263 - 3.8675 1.00 4617 193 0.1218 0.1469 REMARK 3 4 3.8675 - 3.5143 1.00 4541 226 0.1314 0.1357 REMARK 3 5 3.5143 - 3.2625 1.00 4599 207 0.1429 0.1545 REMARK 3 6 3.2625 - 3.0703 1.00 4507 258 0.1517 0.1683 REMARK 3 7 3.0703 - 2.9166 1.00 4476 256 0.1560 0.1817 REMARK 3 8 2.9166 - 2.7897 1.00 4455 290 0.1635 0.1854 REMARK 3 9 2.7897 - 2.6823 1.00 4475 252 0.1651 0.1856 REMARK 3 10 2.6823 - 2.5898 1.00 4484 228 0.1633 0.2047 REMARK 3 11 2.5898 - 2.5088 1.00 4503 237 0.1528 0.1975 REMARK 3 12 2.5088 - 2.4371 1.00 4527 205 0.1559 0.1800 REMARK 3 13 2.4371 - 2.3730 1.00 4474 250 0.1555 0.1853 REMARK 3 14 2.3730 - 2.3151 1.00 4451 250 0.1568 0.1820 REMARK 3 15 2.3151 - 2.2625 1.00 4476 233 0.1569 0.1731 REMARK 3 16 2.2625 - 2.2143 1.00 4479 208 0.1530 0.1905 REMARK 3 17 2.2143 - 2.1701 1.00 4526 197 0.1532 0.1689 REMARK 3 18 2.1701 - 2.1291 1.00 4457 251 0.1562 0.1883 REMARK 3 19 2.1291 - 2.0911 1.00 4440 254 0.1552 0.1919 REMARK 3 20 2.0911 - 2.0557 1.00 4471 224 0.1631 0.1826 REMARK 3 21 2.0557 - 2.0225 1.00 4468 224 0.1617 0.1760 REMARK 3 22 2.0225 - 1.9914 1.00 4481 215 0.1677 0.1942 REMARK 3 23 1.9914 - 1.9621 1.00 4432 257 0.1783 0.1960 REMARK 3 24 1.9621 - 1.9345 1.00 4468 266 0.1902 0.2346 REMARK 3 25 1.9345 - 1.9083 1.00 4405 253 0.2068 0.2253 REMARK 3 26 1.9083 - 1.8835 1.00 4467 221 0.2116 0.2541 REMARK 3 27 1.8835 - 1.8600 1.00 4455 197 0.2174 0.2506 REMARK 3 28 1.8600 - 1.8376 1.00 4469 231 0.2092 0.2519 REMARK 3 29 1.8376 - 1.8162 1.00 4489 208 0.2207 0.2282 REMARK 3 30 1.8162 - 1.7958 0.95 4244 218 0.2255 0.2319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7102 REMARK 3 ANGLE : 0.846 9642 REMARK 3 CHIRALITY : 0.053 1044 REMARK 3 PLANARITY : 0.005 1298 REMARK 3 DIHEDRAL : 15.017 4386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5749 50.2883 62.3785 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1745 REMARK 3 T33: 0.1656 T12: -0.0269 REMARK 3 T13: 0.0146 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.0515 L22: 0.0802 REMARK 3 L33: 0.0900 L12: 0.0397 REMARK 3 L13: 0.0243 L23: 0.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.0069 S13: -0.0306 REMARK 3 S21: -0.0262 S22: 0.0139 S23: 0.0928 REMARK 3 S31: 0.0933 S32: -0.0652 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2238 45.1522 56.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.2056 REMARK 3 T33: 0.1603 T12: -0.0487 REMARK 3 T13: 0.0252 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.0113 REMARK 3 L33: 0.0573 L12: -0.0025 REMARK 3 L13: 0.0571 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.1373 S13: 0.0090 REMARK 3 S21: 0.0881 S22: 0.0373 S23: -0.0656 REMARK 3 S31: -0.0653 S32: 0.1224 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0781 46.0846 73.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.2460 REMARK 3 T33: 0.1833 T12: -0.0441 REMARK 3 T13: 0.0265 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0247 L22: 0.0057 REMARK 3 L33: 0.0285 L12: 0.0121 REMARK 3 L13: 0.0203 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.1796 S13: -0.1530 REMARK 3 S21: 0.2320 S22: -0.0442 S23: 0.0999 REMARK 3 S31: 0.2114 S32: -0.0214 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2115 57.2414 74.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2091 REMARK 3 T33: 0.1513 T12: -0.0454 REMARK 3 T13: 0.0174 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.0620 L22: 0.0744 REMARK 3 L33: 0.0111 L12: 0.0666 REMARK 3 L13: 0.0046 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: -0.2544 S13: 0.1015 REMARK 3 S21: 0.1757 S22: -0.0270 S23: 0.0101 REMARK 3 S31: -0.0866 S32: 0.0567 S33: 0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6482 66.1598 65.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.1507 REMARK 3 T33: 0.2121 T12: -0.0282 REMARK 3 T13: 0.0258 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.0688 L22: 0.0894 REMARK 3 L33: 0.0939 L12: 0.1011 REMARK 3 L13: -0.0625 L23: -0.0800 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.0073 S13: 0.2197 REMARK 3 S21: -0.0520 S22: -0.0231 S23: 0.0957 REMARK 3 S31: -0.1949 S32: 0.0912 S33: -0.0008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9840 53.8459 60.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2233 REMARK 3 T33: 0.1477 T12: -0.0480 REMARK 3 T13: 0.0142 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0224 L22: 0.0058 REMARK 3 L33: 0.0221 L12: -0.0227 REMARK 3 L13: -0.0228 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0207 S13: 0.0924 REMARK 3 S21: 0.0672 S22: -0.0746 S23: -0.0857 REMARK 3 S31: -0.1076 S32: 0.1844 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6343 30.6965 78.7569 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.1548 REMARK 3 T33: 0.1288 T12: -0.0199 REMARK 3 T13: 0.0003 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.2097 L22: 0.1842 REMARK 3 L33: 0.3110 L12: -0.1607 REMARK 3 L13: -0.2594 L23: 0.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0021 S13: 0.0129 REMARK 3 S21: 0.0161 S22: 0.0243 S23: 0.0028 REMARK 3 S31: 0.0063 S32: 0.0833 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 708 THROUGH 818 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9051 41.0735 48.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1247 REMARK 3 T33: 0.1390 T12: -0.0050 REMARK 3 T13: 0.0121 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.1004 L22: -0.1276 REMARK 3 L33: 0.3392 L12: 0.1402 REMARK 3 L13: -0.0614 L23: -0.1210 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.0073 S13: 0.0133 REMARK 3 S21: -0.0181 S22: 0.0128 S23: 0.0508 REMARK 3 S31: -0.0594 S32: -0.0551 S33: 0.0009 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 819 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1156 33.2073 32.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0801 REMARK 3 T33: 0.0763 T12: -0.0205 REMARK 3 T13: 0.0109 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1756 L22: 0.3261 REMARK 3 L33: 0.6846 L12: 0.0591 REMARK 3 L13: -0.1461 L23: -0.1998 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.0161 S13: -0.0009 REMARK 3 S21: -0.0201 S22: 0.0182 S23: -0.0234 REMARK 3 S31: 0.0174 S32: 0.0523 S33: -0.0061 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5750 12.1264 41.7625 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.1608 REMARK 3 T33: 0.2502 T12: 0.0128 REMARK 3 T13: -0.0022 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: 0.0879 REMARK 3 L33: 0.0192 L12: -0.0239 REMARK 3 L13: 0.0227 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.0398 S13: 0.1887 REMARK 3 S21: 0.1077 S22: 0.0354 S23: -0.1892 REMARK 3 S31: 0.0347 S32: 0.0291 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2089 12.6270 55.8807 REMARK 3 T TENSOR REMARK 3 T11: 0.3758 T22: 0.1875 REMARK 3 T33: 0.5594 T12: 0.0045 REMARK 3 T13: -0.1914 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 0.0293 L22: 0.0031 REMARK 3 L33: 0.0045 L12: 0.0094 REMARK 3 L13: 0.0093 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.0317 S13: -0.1264 REMARK 3 S21: 0.0988 S22: 0.0629 S23: 0.0391 REMARK 3 S31: 0.1595 S32: 0.0077 S33: 0.0097 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9709 14.3080 46.0589 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.2492 REMARK 3 T33: 0.3941 T12: 0.0435 REMARK 3 T13: -0.1057 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.0026 L22: 0.0129 REMARK 3 L33: 0.0135 L12: 0.0110 REMARK 3 L13: -0.0186 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0611 S13: 0.0370 REMARK 3 S21: 0.0363 S22: -0.1492 S23: -0.0790 REMARK 3 S31: -0.1204 S32: 0.1549 S33: -0.0006 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4734 19.0196 36.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1131 REMARK 3 T33: 0.2051 T12: 0.0013 REMARK 3 T13: 0.0070 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0425 L22: 0.0909 REMARK 3 L33: 0.1006 L12: 0.0253 REMARK 3 L13: 0.0897 L23: 0.0693 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0059 S13: -0.0509 REMARK 3 S21: -0.0243 S22: -0.0258 S23: -0.2139 REMARK 3 S31: -0.0371 S32: -0.0014 S33: -0.0012 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0551 8.7425 31.7613 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1366 REMARK 3 T33: 0.1570 T12: 0.0166 REMARK 3 T13: 0.0174 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.1861 REMARK 3 L33: 0.0498 L12: -0.0100 REMARK 3 L13: -0.0539 L23: 0.0178 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.0417 S13: -0.0046 REMARK 3 S21: -0.1193 S22: -0.0215 S23: 0.0196 REMARK 3 S31: 0.0365 S32: 0.0284 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0895 -1.8497 36.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1526 REMARK 3 T33: 0.2239 T12: 0.0056 REMARK 3 T13: 0.0122 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.0318 L22: 0.0332 REMARK 3 L33: 0.0301 L12: -0.0071 REMARK 3 L13: 0.0302 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: -0.0519 S13: 0.0136 REMARK 3 S21: -0.1085 S22: -0.0159 S23: 0.2555 REMARK 3 S31: 0.0750 S32: 0.0148 S33: 0.0004 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4642 2.3990 39.7169 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1415 REMARK 3 T33: 0.1971 T12: 0.0306 REMARK 3 T13: 0.0112 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0798 L22: 0.1053 REMARK 3 L33: 0.2115 L12: 0.0060 REMARK 3 L13: 0.1216 L23: 0.0560 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0444 S13: 0.0283 REMARK 3 S21: 0.0139 S22: -0.0240 S23: -0.1309 REMARK 3 S31: 0.0805 S32: -0.0334 S33: 0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 36.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 92.15800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.52950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 92.15800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.52950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 92.15800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.52950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 92.15800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.52950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.15800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.52950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.15800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.52950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.15800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.52950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.15800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 92.15800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.52950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2581 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2849 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2570 O HOH B 2693 1.79 REMARK 500 O HOH B 2234 O HOH B 2574 1.84 REMARK 500 O HOH B 2379 O HOH B 2665 1.85 REMARK 500 O HOH A 437 O HOH A 475 1.85 REMARK 500 O HOH B 2773 O HOH B 2776 1.86 REMARK 500 O HOH B 2404 O HOH B 2656 1.89 REMARK 500 O HOH B 2216 O HOH B 2359 1.90 REMARK 500 O HOH A 439 O HOH A 483 1.91 REMARK 500 O HOH C 321 O HOH C 344 1.92 REMARK 500 O HOH B 2159 O HOH B 2588 1.92 REMARK 500 O HOH B 2234 O HOH B 2361 1.96 REMARK 500 O HOH A 416 O HOH A 464 1.97 REMARK 500 O HOH B 2186 O HOH C 446 1.98 REMARK 500 NH1 ARG C 68 O HOH C 301 1.98 REMARK 500 O2 GOL B 2008 O HOH B 2101 1.99 REMARK 500 O HOH B 2551 O HOH B 2614 2.00 REMARK 500 O HOH B 2713 O HOH B 2802 2.00 REMARK 500 OE1 GLN B 892 O HOH B 2102 2.00 REMARK 500 O HOH A 446 O HOH A 466 2.02 REMARK 500 O HOH B 2314 O HOH B 2616 2.03 REMARK 500 O HOH C 303 O HOH C 451 2.04 REMARK 500 O HOH B 2605 O HOH B 2674 2.04 REMARK 500 O HOH B 2461 O HOH B 2759 2.04 REMARK 500 ND1 HIS B 951 O HOH B 2103 2.06 REMARK 500 O2 FMT C 201 O HOH C 302 2.06 REMARK 500 O HOH B 2319 O HOH B 2602 2.06 REMARK 500 O HOH C 417 O HOH C 499 2.06 REMARK 500 O HOH B 2411 O HOH B 2554 2.06 REMARK 500 O HOH B 2511 O HOH B 2769 2.07 REMARK 500 OE1 GLN A 129 O HOH A 301 2.07 REMARK 500 O HOH A 423 O HOH A 469 2.07 REMARK 500 OE2 GLU B 772 O HOH B 2104 2.09 REMARK 500 OE1 GLU B 680 O HOH B 2105 2.09 REMARK 500 O HOH B 2758 O HOH B 2842 2.11 REMARK 500 O HOH B 2519 O HOH B 2544 2.11 REMARK 500 O HOH B 2299 O HOH B 2633 2.12 REMARK 500 O HOH C 459 O HOH C 485 2.12 REMARK 500 O HOH B 2149 O HOH B 2662 2.13 REMARK 500 O HOH B 2498 O HOH B 2709 2.13 REMARK 500 ND2 ASN A 86 O HOH A 302 2.13 REMARK 500 O HOH B 2119 O HOH B 2593 2.14 REMARK 500 O HOH A 482 O HOH B 2646 2.15 REMARK 500 O HOH B 2202 O HOH B 2694 2.16 REMARK 500 O HOH A 412 O HOH A 455 2.16 REMARK 500 O PRO B 621 O HOH B 2106 2.16 REMARK 500 O HOH B 2133 O HOH B 2540 2.16 REMARK 500 O HOH B 2815 O HOH B 2832 2.17 REMARK 500 O HOH B 2153 O HOH B 2164 2.18 REMARK 500 O HOH C 307 O HOH C 394 2.18 REMARK 500 O HOH C 308 O HOH C 412 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 51 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2114 O HOH B 2640 5556 1.81 REMARK 500 O HOH B 2781 O HOH B 2852 7556 1.96 REMARK 500 O HOH B 2671 O HOH B 2748 5556 2.02 REMARK 500 O HOH B 2740 O HOH C 498 3555 2.10 REMARK 500 O HOH B 2719 O HOH C 478 3555 2.11 REMARK 500 O HOH B 2114 O HOH B 2230 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.24 -99.75 REMARK 500 LYS A 117 35.34 72.09 REMARK 500 ARG A 149 -4.49 82.25 REMARK 500 PHE B 634 -3.77 -140.17 REMARK 500 HIS B 764 -117.94 -124.18 REMARK 500 HIS B 770 62.94 -100.75 REMARK 500 ASN C 26 100.19 -41.33 REMARK 500 GLU C 37 115.63 -30.64 REMARK 500 ASP C 119 -168.32 -166.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 145.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.2 REMARK 620 3 GNP A 201 O1G 172.2 90.2 REMARK 620 4 GNP A 201 O1B 93.3 174.7 94.4 REMARK 620 5 HOH A 316 O 85.5 87.3 92.4 95.1 REMARK 620 6 HOH A 371 O 88.3 88.1 93.3 89.0 172.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 87 OG1 REMARK 620 2 THR C 124 OG1 97.5 REMARK 620 3 HOH C 467 O 65.0 93.4 REMARK 620 4 HOH C 474 O 121.6 134.9 121.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EBV B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 202 DBREF 6BVM A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6BVM B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6BVM C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6BVM GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6BVM ALA A 64 UNP P01112 TYR 64 ENGINEERED MUTATION SEQADV 6BVM GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6BVM GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6BVM CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET EBV B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET FMT C 201 3 HET NA C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EBV (2S)-2-AMINO-1-[(3AR,6AS)-5-[(5-CHLORO-1H-INDOL-3-YL) HETNAM 2 EBV METHYL]HEXAHYDROPYRROLO[3,4-C]PYRROL-2(1H)-YL]-3-(1H- HETNAM 3 EBV INDOL-3-YL)PROPAN-1-ONE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 EBV C26 H28 CL N5 O FORMUL 7 FMT 6(C H2 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 16 HOH *1167(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ASP B 707 1 7 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 MET B 726 ILE B 742 1 17 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 GLN B 892 1 7 HELIX 28 AD1 PRO B 894 LEU B 907 1 14 HELIX 29 AD2 SER B 908 ARG B 920 1 13 HELIX 30 AD3 PHE B 930 ASN B 944 1 15 HELIX 31 AD4 PHE B 958 GLN B 975 1 18 HELIX 32 AD5 GLU B 984 ASN B 993 1 10 HELIX 33 AD6 MET B 1001 GLU B 1017 1 17 HELIX 34 AD7 SER C 17 GLN C 25 1 9 HELIX 35 AD8 TYR C 64 ALA C 66 5 3 HELIX 36 AD9 MET C 67 THR C 74 1 8 HELIX 37 AE1 ASN C 86 ASP C 92 1 7 HELIX 38 AE2 ASP C 92 ASP C 105 1 14 HELIX 39 AE3 GLU C 126 GLY C 138 1 13 HELIX 40 AE4 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.33 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.09 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.05 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.01 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 316 1555 1555 2.18 LINK MG MG A 202 O HOH A 371 1555 1555 2.07 LINK OG1BTHR C 87 NA NA C 202 1555 1555 3.14 LINK OG1 THR C 124 NA NA C 202 1555 1555 3.12 LINK NA NA C 202 O HOH C 467 1555 1555 2.67 LINK NA NA C 202 O HOH C 474 1555 1555 2.37 CISPEP 1 PRO B 924 PRO B 925 0 9.74 CISPEP 2 ASN B 1020 PRO B 1021 0 5.92 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 30 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 30 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 30 HOH A 316 HOH A 354 HOH A 370 HOH A 371 SITE 8 AC1 30 HOH A 385 HOH A 435 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 316 SITE 2 AC2 5 HOH A 371 SITE 1 AC3 9 MET B 878 ASN B 879 TYR B 884 PHE B 890 SITE 2 AC3 9 LYS B 898 GLU B 902 HIS B 905 HOH B2157 SITE 3 AC3 9 HOH B2456 SITE 1 AC4 5 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC4 5 HOH B2330 SITE 1 AC5 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC6 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC6 7 ARG B 688 HOH B2203 HOH B2254 SITE 1 AC7 7 GLU B 611 TYR B 615 HIS B 616 ARG B 647 SITE 2 AC7 7 TYR B 681 VAL B 685 HOH B2282 SITE 1 AC8 1 TYR B1031 SITE 1 AC9 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AC9 5 HOH B2384 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2101 SITE 2 AD1 5 HOH B2321 SITE 1 AD2 8 LEU B 938 GLY C 15 LYS C 16 SER C 17 SITE 2 AD2 8 ALA C 59 HOH C 302 HOH C 401 HOH C 408 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 467 HOH C 474 CRYST1 184.316 184.316 179.059 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005585 0.00000