data_6BVN # _entry.id 6BVN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BVN pdb_00006bvn 10.2210/pdb6bvn/pdb WWPDB D_1000231688 ? ? EMDB EMD-7295 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-07 2 'Structure model' 1 1 2018-02-14 3 'Structure model' 1 2 2019-11-27 4 'Structure model' 2 0 2022-04-13 5 'Structure model' 2 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Non-polymer description' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp 4 4 'Structure model' database_2 5 4 'Structure model' entity 6 4 'Structure model' pdbx_struct_oper_list 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' em_3d_fitting_list 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_audit_support.grant_number' 4 4 'Structure model' '_chem_comp.formula' 5 4 'Structure model' '_chem_comp.formula_weight' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_entity.formula_weight' 9 4 'Structure model' '_pdbx_struct_oper_list.name' 10 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 11 4 'Structure model' '_pdbx_struct_oper_list.type' 12 5 'Structure model' '_em_3d_fitting_list.accession_code' 13 5 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 14 5 'Structure model' '_em_3d_fitting_list.source_name' 15 5 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6BVN _pdbx_database_status.recvd_initial_deposition_date 2017-12-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'Hepatitis B virus T=4 capsid' EMD-7294 'other EM volume' PDB 'Hepatitis B virus T=4 capsid' 6BVF unspecified EMDB 'Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA' EMD-7295 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schlicksup, C.' 1 ? 'Wang, J.C.' 2 ? 'Zlotnick, A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.31473 _citation.pdbx_database_id_PubMed 29377794 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schlicksup, C.J.' 1 ? primary 'Wang, J.C.' 2 ? primary 'Francis, S.' 3 ? primary 'Venkatakrishnan, B.' 4 ? primary 'Turner, W.W.' 5 ? primary 'VanNieuwenhze, M.' 6 ? primary 'Zlotnick, A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein' 16791.104 3 ? 'C48A, C61A, C107A' 'UNP residues 1-149' ? 2 non-polymer syn 'Heteroaryldihydropyrimidine tetramethylrodamine' 939.428 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Core antigen, Core protein, HBcAg, p21.5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILAWGDLMTLATWVGTNLEDPA SRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVVC ; _entity_poly.pdbx_seq_one_letter_code_can ;MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILAWGDLMTLATWVGTNLEDPA SRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVVC ; _entity_poly.pdbx_strand_id C,B,A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'Heteroaryldihydropyrimidine tetramethylrodamine' _pdbx_entity_nonpoly.comp_id E9D # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ILE n 1 4 ASP n 1 5 PRO n 1 6 TYR n 1 7 LYS n 1 8 GLU n 1 9 PHE n 1 10 GLY n 1 11 ALA n 1 12 THR n 1 13 VAL n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 SER n 1 18 PHE n 1 19 LEU n 1 20 PRO n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 PHE n 1 25 PRO n 1 26 SER n 1 27 VAL n 1 28 ARG n 1 29 ASP n 1 30 LEU n 1 31 LEU n 1 32 ASP n 1 33 THR n 1 34 ALA n 1 35 ALA n 1 36 ALA n 1 37 LEU n 1 38 TYR n 1 39 ARG n 1 40 ASP n 1 41 ALA n 1 42 LEU n 1 43 GLU n 1 44 SER n 1 45 PRO n 1 46 GLU n 1 47 HIS n 1 48 ALA n 1 49 SER n 1 50 PRO n 1 51 HIS n 1 52 HIS n 1 53 THR n 1 54 ALA n 1 55 LEU n 1 56 ARG n 1 57 GLN n 1 58 ALA n 1 59 ILE n 1 60 LEU n 1 61 ALA n 1 62 TRP n 1 63 GLY n 1 64 ASP n 1 65 LEU n 1 66 MET n 1 67 THR n 1 68 LEU n 1 69 ALA n 1 70 THR n 1 71 TRP n 1 72 VAL n 1 73 GLY n 1 74 THR n 1 75 ASN n 1 76 LEU n 1 77 GLU n 1 78 ASP n 1 79 PRO n 1 80 ALA n 1 81 SER n 1 82 ARG n 1 83 ASP n 1 84 LEU n 1 85 VAL n 1 86 VAL n 1 87 SER n 1 88 TYR n 1 89 VAL n 1 90 ASN n 1 91 THR n 1 92 ASN n 1 93 VAL n 1 94 GLY n 1 95 LEU n 1 96 LYS n 1 97 PHE n 1 98 ARG n 1 99 GLN n 1 100 LEU n 1 101 LEU n 1 102 TRP n 1 103 PHE n 1 104 HIS n 1 105 ILE n 1 106 SER n 1 107 ALA n 1 108 LEU n 1 109 THR n 1 110 PHE n 1 111 GLY n 1 112 ARG n 1 113 GLU n 1 114 THR n 1 115 VAL n 1 116 LEU n 1 117 GLU n 1 118 TYR n 1 119 LEU n 1 120 VAL n 1 121 SER n 1 122 PHE n 1 123 GLY n 1 124 VAL n 1 125 TRP n 1 126 ILE n 1 127 ARG n 1 128 THR n 1 129 PRO n 1 130 PRO n 1 131 ALA n 1 132 TYR n 1 133 ARG n 1 134 PRO n 1 135 PRO n 1 136 ASN n 1 137 ALA n 1 138 PRO n 1 139 ILE n 1 140 LEU n 1 141 SER n 1 142 THR n 1 143 LEU n 1 144 PRO n 1 145 GLU n 1 146 THR n 1 147 THR n 1 148 VAL n 1 149 VAL n 1 150 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 150 _entity_src_gen.gene_src_common_name 'isolate United Kingdom/adyw/1979' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Hepatitis B virus genotype D subtype adw' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10419 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 E9D non-polymer . 'Heteroaryldihydropyrimidine tetramethylrodamine' HAP-TAMRA 'C51 H48 Cl F N8 O7' 939.428 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET C . n A 1 2 ASP 2 2 2 ASP ASP C . n A 1 3 ILE 3 3 3 ILE ILE C . n A 1 4 ASP 4 4 4 ASP ASP C . n A 1 5 PRO 5 5 5 PRO PRO C . n A 1 6 TYR 6 6 6 TYR TYR C . n A 1 7 LYS 7 7 7 LYS LYS C . n A 1 8 GLU 8 8 8 GLU GLU C . n A 1 9 PHE 9 9 9 PHE PHE C . n A 1 10 GLY 10 10 10 GLY GLY C . n A 1 11 ALA 11 11 11 ALA ALA C . n A 1 12 THR 12 12 12 THR THR C . n A 1 13 VAL 13 13 13 VAL VAL C . n A 1 14 GLU 14 14 14 GLU GLU C . n A 1 15 LEU 15 15 15 LEU LEU C . n A 1 16 LEU 16 16 16 LEU LEU C . n A 1 17 SER 17 17 17 SER SER C . n A 1 18 PHE 18 18 18 PHE PHE C . n A 1 19 LEU 19 19 19 LEU LEU C . n A 1 20 PRO 20 20 20 PRO PRO C . n A 1 21 SER 21 21 21 SER SER C . n A 1 22 ASP 22 22 22 ASP ASP C . n A 1 23 PHE 23 23 23 PHE PHE C . n A 1 24 PHE 24 24 24 PHE PHE C . n A 1 25 PRO 25 25 25 PRO PRO C . n A 1 26 SER 26 26 26 SER SER C . n A 1 27 VAL 27 27 27 VAL VAL C . n A 1 28 ARG 28 28 28 ARG ARG C . n A 1 29 ASP 29 29 29 ASP ASP C . n A 1 30 LEU 30 30 30 LEU LEU C . n A 1 31 LEU 31 31 31 LEU LEU C . n A 1 32 ASP 32 32 32 ASP ASP C . n A 1 33 THR 33 33 33 THR THR C . n A 1 34 ALA 34 34 34 ALA ALA C . n A 1 35 ALA 35 35 35 ALA ALA C . n A 1 36 ALA 36 36 36 ALA ALA C . n A 1 37 LEU 37 37 37 LEU LEU C . n A 1 38 TYR 38 38 38 TYR TYR C . n A 1 39 ARG 39 39 39 ARG ARG C . n A 1 40 ASP 40 40 40 ASP ASP C . n A 1 41 ALA 41 41 41 ALA ALA C . n A 1 42 LEU 42 42 42 LEU LEU C . n A 1 43 GLU 43 43 43 GLU GLU C . n A 1 44 SER 44 44 44 SER SER C . n A 1 45 PRO 45 45 45 PRO PRO C . n A 1 46 GLU 46 46 46 GLU GLU C . n A 1 47 HIS 47 47 47 HIS HIS C . n A 1 48 ALA 48 48 48 ALA ALA C . n A 1 49 SER 49 49 49 SER SER C . n A 1 50 PRO 50 50 50 PRO PRO C . n A 1 51 HIS 51 51 51 HIS HIS C . n A 1 52 HIS 52 52 52 HIS HIS C . n A 1 53 THR 53 53 53 THR THR C . n A 1 54 ALA 54 54 54 ALA ALA C . n A 1 55 LEU 55 55 55 LEU LEU C . n A 1 56 ARG 56 56 56 ARG ARG C . n A 1 57 GLN 57 57 57 GLN GLN C . n A 1 58 ALA 58 58 58 ALA ALA C . n A 1 59 ILE 59 59 59 ILE ILE C . n A 1 60 LEU 60 60 60 LEU LEU C . n A 1 61 ALA 61 61 61 ALA ALA C . n A 1 62 TRP 62 62 62 TRP TRP C . n A 1 63 GLY 63 63 63 GLY GLY C . n A 1 64 ASP 64 64 64 ASP ASP C . n A 1 65 LEU 65 65 65 LEU LEU C . n A 1 66 MET 66 66 66 MET MET C . n A 1 67 THR 67 67 67 THR THR C . n A 1 68 LEU 68 68 68 LEU LEU C . n A 1 69 ALA 69 69 69 ALA ALA C . n A 1 70 THR 70 70 70 THR THR C . n A 1 71 TRP 71 71 71 TRP TRP C . n A 1 72 VAL 72 72 72 VAL VAL C . n A 1 73 GLY 73 73 73 GLY GLY C . n A 1 74 THR 74 74 74 THR THR C . n A 1 75 ASN 75 75 75 ASN ASN C . n A 1 76 LEU 76 76 76 LEU LEU C . n A 1 77 GLU 77 77 77 GLU GLU C . n A 1 78 ASP 78 78 78 ASP ASP C . n A 1 79 PRO 79 79 79 PRO PRO C . n A 1 80 ALA 80 80 80 ALA ALA C . n A 1 81 SER 81 81 81 SER SER C . n A 1 82 ARG 82 82 82 ARG ARG C . n A 1 83 ASP 83 83 83 ASP ASP C . n A 1 84 LEU 84 84 84 LEU LEU C . n A 1 85 VAL 85 85 85 VAL VAL C . n A 1 86 VAL 86 86 86 VAL VAL C . n A 1 87 SER 87 87 87 SER SER C . n A 1 88 TYR 88 88 88 TYR TYR C . n A 1 89 VAL 89 89 89 VAL VAL C . n A 1 90 ASN 90 90 90 ASN ASN C . n A 1 91 THR 91 91 91 THR THR C . n A 1 92 ASN 92 92 92 ASN ASN C . n A 1 93 VAL 93 93 93 VAL VAL C . n A 1 94 GLY 94 94 94 GLY GLY C . n A 1 95 LEU 95 95 95 LEU LEU C . n A 1 96 LYS 96 96 96 LYS LYS C . n A 1 97 PHE 97 97 97 PHE PHE C . n A 1 98 ARG 98 98 98 ARG ARG C . n A 1 99 GLN 99 99 99 GLN GLN C . n A 1 100 LEU 100 100 100 LEU LEU C . n A 1 101 LEU 101 101 101 LEU LEU C . n A 1 102 TRP 102 102 102 TRP TRP C . n A 1 103 PHE 103 103 103 PHE PHE C . n A 1 104 HIS 104 104 104 HIS HIS C . n A 1 105 ILE 105 105 105 ILE ILE C . n A 1 106 SER 106 106 106 SER SER C . n A 1 107 ALA 107 107 107 ALA ALA C . n A 1 108 LEU 108 108 108 LEU LEU C . n A 1 109 THR 109 109 109 THR THR C . n A 1 110 PHE 110 110 110 PHE PHE C . n A 1 111 GLY 111 111 111 GLY GLY C . n A 1 112 ARG 112 112 112 ARG ARG C . n A 1 113 GLU 113 113 113 GLU GLU C . n A 1 114 THR 114 114 114 THR THR C . n A 1 115 VAL 115 115 115 VAL VAL C . n A 1 116 LEU 116 116 116 LEU LEU C . n A 1 117 GLU 117 117 117 GLU GLU C . n A 1 118 TYR 118 118 118 TYR TYR C . n A 1 119 LEU 119 119 119 LEU LEU C . n A 1 120 VAL 120 120 120 VAL VAL C . n A 1 121 SER 121 121 121 SER SER C . n A 1 122 PHE 122 122 122 PHE PHE C . n A 1 123 GLY 123 123 123 GLY GLY C . n A 1 124 VAL 124 124 124 VAL VAL C . n A 1 125 TRP 125 125 125 TRP TRP C . n A 1 126 ILE 126 126 126 ILE ILE C . n A 1 127 ARG 127 127 127 ARG ARG C . n A 1 128 THR 128 128 128 THR THR C . n A 1 129 PRO 129 129 129 PRO PRO C . n A 1 130 PRO 130 130 130 PRO PRO C . n A 1 131 ALA 131 131 131 ALA ALA C . n A 1 132 TYR 132 132 132 TYR TYR C . n A 1 133 ARG 133 133 133 ARG ARG C . n A 1 134 PRO 134 134 134 PRO PRO C . n A 1 135 PRO 135 135 135 PRO PRO C . n A 1 136 ASN 136 136 136 ASN ASN C . n A 1 137 ALA 137 137 137 ALA ALA C . n A 1 138 PRO 138 138 138 PRO PRO C . n A 1 139 ILE 139 139 139 ILE ILE C . n A 1 140 LEU 140 140 140 LEU LEU C . n A 1 141 SER 141 141 141 SER SER C . n A 1 142 THR 142 142 142 THR THR C . n A 1 143 LEU 143 143 143 LEU LEU C . n A 1 144 PRO 144 144 144 PRO PRO C . n A 1 145 GLU 145 145 ? ? ? C . n A 1 146 THR 146 146 ? ? ? C . n A 1 147 THR 147 147 ? ? ? C . n A 1 148 VAL 148 148 ? ? ? C . n A 1 149 VAL 149 149 ? ? ? C . n A 1 150 CYS 150 150 ? ? ? C . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ASP 2 2 2 ASP ASP B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ASP 4 4 4 ASP ASP B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 PHE 9 9 9 PHE PHE B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 SER 17 17 17 SER SER B . n B 1 18 PHE 18 18 18 PHE PHE B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 PHE 24 24 24 PHE PHE B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 ALA 35 35 35 ALA ALA B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 TYR 38 38 38 TYR TYR B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 PRO 45 45 45 PRO PRO B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 HIS 47 47 47 HIS HIS B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 PRO 50 50 50 PRO PRO B . n B 1 51 HIS 51 51 51 HIS HIS B . n B 1 52 HIS 52 52 52 HIS HIS B . n B 1 53 THR 53 53 53 THR THR B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 GLN 57 57 57 GLN GLN B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 TRP 62 62 62 TRP TRP B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 MET 66 66 66 MET MET B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 TRP 71 71 71 TRP TRP B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 ASN 75 75 75 ASN ASN B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 ASP 78 78 78 ASP ASP B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 SER 81 81 81 SER SER B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 VAL 85 85 85 VAL VAL B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 SER 87 87 87 SER SER B . n B 1 88 TYR 88 88 88 TYR TYR B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 ASN 90 90 90 ASN ASN B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 ASN 92 92 92 ASN ASN B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 LYS 96 96 96 LYS LYS B . n B 1 97 PHE 97 97 97 PHE PHE B . n B 1 98 ARG 98 98 98 ARG ARG B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 TRP 102 102 102 TRP TRP B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 HIS 104 104 104 HIS HIS B . n B 1 105 ILE 105 105 105 ILE ILE B . n B 1 106 SER 106 106 106 SER SER B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 PHE 110 110 110 PHE PHE B . n B 1 111 GLY 111 111 111 GLY GLY B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 GLU 113 113 113 GLU GLU B . n B 1 114 THR 114 114 114 THR THR B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 GLU 117 117 117 GLU GLU B . n B 1 118 TYR 118 118 118 TYR TYR B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 VAL 120 120 120 VAL VAL B . n B 1 121 SER 121 121 121 SER SER B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 GLY 123 123 123 GLY GLY B . n B 1 124 VAL 124 124 124 VAL VAL B . n B 1 125 TRP 125 125 125 TRP TRP B . n B 1 126 ILE 126 126 126 ILE ILE B . n B 1 127 ARG 127 127 127 ARG ARG B . n B 1 128 THR 128 128 128 THR THR B . n B 1 129 PRO 129 129 129 PRO PRO B . n B 1 130 PRO 130 130 130 PRO PRO B . n B 1 131 ALA 131 131 131 ALA ALA B . n B 1 132 TYR 132 132 132 TYR TYR B . n B 1 133 ARG 133 133 133 ARG ARG B . n B 1 134 PRO 134 134 134 PRO PRO B . n B 1 135 PRO 135 135 135 PRO PRO B . n B 1 136 ASN 136 136 136 ASN ASN B . n B 1 137 ALA 137 137 137 ALA ALA B . n B 1 138 PRO 138 138 138 PRO PRO B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 SER 141 141 141 SER SER B . n B 1 142 THR 142 142 142 THR THR B . n B 1 143 LEU 143 143 143 LEU LEU B . n B 1 144 PRO 144 144 144 PRO PRO B . n B 1 145 GLU 145 145 ? ? ? B . n B 1 146 THR 146 146 ? ? ? B . n B 1 147 THR 147 147 ? ? ? B . n B 1 148 VAL 148 148 ? ? ? B . n B 1 149 VAL 149 149 ? ? ? B . n B 1 150 CYS 150 150 ? ? ? B . n C 1 1 MET 1 1 1 MET MET A . n C 1 2 ASP 2 2 2 ASP ASP A . n C 1 3 ILE 3 3 3 ILE ILE A . n C 1 4 ASP 4 4 4 ASP ASP A . n C 1 5 PRO 5 5 5 PRO PRO A . n C 1 6 TYR 6 6 6 TYR TYR A . n C 1 7 LYS 7 7 7 LYS LYS A . n C 1 8 GLU 8 8 8 GLU GLU A . n C 1 9 PHE 9 9 9 PHE PHE A . n C 1 10 GLY 10 10 10 GLY GLY A . n C 1 11 ALA 11 11 11 ALA ALA A . n C 1 12 THR 12 12 12 THR THR A . n C 1 13 VAL 13 13 13 VAL VAL A . n C 1 14 GLU 14 14 14 GLU GLU A . n C 1 15 LEU 15 15 15 LEU LEU A . n C 1 16 LEU 16 16 16 LEU LEU A . n C 1 17 SER 17 17 17 SER SER A . n C 1 18 PHE 18 18 18 PHE PHE A . n C 1 19 LEU 19 19 19 LEU LEU A . n C 1 20 PRO 20 20 20 PRO PRO A . n C 1 21 SER 21 21 21 SER SER A . n C 1 22 ASP 22 22 22 ASP ASP A . n C 1 23 PHE 23 23 23 PHE PHE A . n C 1 24 PHE 24 24 24 PHE PHE A . n C 1 25 PRO 25 25 25 PRO PRO A . n C 1 26 SER 26 26 26 SER SER A . n C 1 27 VAL 27 27 27 VAL VAL A . n C 1 28 ARG 28 28 28 ARG ARG A . n C 1 29 ASP 29 29 29 ASP ASP A . n C 1 30 LEU 30 30 30 LEU LEU A . n C 1 31 LEU 31 31 31 LEU LEU A . n C 1 32 ASP 32 32 32 ASP ASP A . n C 1 33 THR 33 33 33 THR THR A . n C 1 34 ALA 34 34 34 ALA ALA A . n C 1 35 ALA 35 35 35 ALA ALA A . n C 1 36 ALA 36 36 36 ALA ALA A . n C 1 37 LEU 37 37 37 LEU LEU A . n C 1 38 TYR 38 38 38 TYR TYR A . n C 1 39 ARG 39 39 39 ARG ARG A . n C 1 40 ASP 40 40 40 ASP ASP A . n C 1 41 ALA 41 41 41 ALA ALA A . n C 1 42 LEU 42 42 42 LEU LEU A . n C 1 43 GLU 43 43 43 GLU GLU A . n C 1 44 SER 44 44 44 SER SER A . n C 1 45 PRO 45 45 45 PRO PRO A . n C 1 46 GLU 46 46 46 GLU GLU A . n C 1 47 HIS 47 47 47 HIS HIS A . n C 1 48 ALA 48 48 48 ALA ALA A . n C 1 49 SER 49 49 49 SER SER A . n C 1 50 PRO 50 50 50 PRO PRO A . n C 1 51 HIS 51 51 51 HIS HIS A . n C 1 52 HIS 52 52 52 HIS HIS A . n C 1 53 THR 53 53 53 THR THR A . n C 1 54 ALA 54 54 54 ALA ALA A . n C 1 55 LEU 55 55 55 LEU LEU A . n C 1 56 ARG 56 56 56 ARG ARG A . n C 1 57 GLN 57 57 57 GLN GLN A . n C 1 58 ALA 58 58 58 ALA ALA A . n C 1 59 ILE 59 59 59 ILE ILE A . n C 1 60 LEU 60 60 60 LEU LEU A . n C 1 61 ALA 61 61 61 ALA ALA A . n C 1 62 TRP 62 62 62 TRP TRP A . n C 1 63 GLY 63 63 63 GLY GLY A . n C 1 64 ASP 64 64 64 ASP ASP A . n C 1 65 LEU 65 65 65 LEU LEU A . n C 1 66 MET 66 66 66 MET MET A . n C 1 67 THR 67 67 67 THR THR A . n C 1 68 LEU 68 68 68 LEU LEU A . n C 1 69 ALA 69 69 69 ALA ALA A . n C 1 70 THR 70 70 70 THR THR A . n C 1 71 TRP 71 71 71 TRP TRP A . n C 1 72 VAL 72 72 72 VAL VAL A . n C 1 73 GLY 73 73 73 GLY GLY A . n C 1 74 THR 74 74 74 THR THR A . n C 1 75 ASN 75 75 75 ASN ASN A . n C 1 76 LEU 76 76 76 LEU LEU A . n C 1 77 GLU 77 77 77 GLU GLU A . n C 1 78 ASP 78 78 78 ASP ASP A . n C 1 79 PRO 79 79 79 PRO PRO A . n C 1 80 ALA 80 80 80 ALA ALA A . n C 1 81 SER 81 81 81 SER SER A . n C 1 82 ARG 82 82 82 ARG ARG A . n C 1 83 ASP 83 83 83 ASP ASP A . n C 1 84 LEU 84 84 84 LEU LEU A . n C 1 85 VAL 85 85 85 VAL VAL A . n C 1 86 VAL 86 86 86 VAL VAL A . n C 1 87 SER 87 87 87 SER SER A . n C 1 88 TYR 88 88 88 TYR TYR A . n C 1 89 VAL 89 89 89 VAL VAL A . n C 1 90 ASN 90 90 90 ASN ASN A . n C 1 91 THR 91 91 91 THR THR A . n C 1 92 ASN 92 92 92 ASN ASN A . n C 1 93 VAL 93 93 93 VAL VAL A . n C 1 94 GLY 94 94 94 GLY GLY A . n C 1 95 LEU 95 95 95 LEU LEU A . n C 1 96 LYS 96 96 96 LYS LYS A . n C 1 97 PHE 97 97 97 PHE PHE A . n C 1 98 ARG 98 98 98 ARG ARG A . n C 1 99 GLN 99 99 99 GLN GLN A . n C 1 100 LEU 100 100 100 LEU LEU A . n C 1 101 LEU 101 101 101 LEU LEU A . n C 1 102 TRP 102 102 102 TRP TRP A . n C 1 103 PHE 103 103 103 PHE PHE A . n C 1 104 HIS 104 104 104 HIS HIS A . n C 1 105 ILE 105 105 105 ILE ILE A . n C 1 106 SER 106 106 106 SER SER A . n C 1 107 ALA 107 107 107 ALA ALA A . n C 1 108 LEU 108 108 108 LEU LEU A . n C 1 109 THR 109 109 109 THR THR A . n C 1 110 PHE 110 110 110 PHE PHE A . n C 1 111 GLY 111 111 111 GLY GLY A . n C 1 112 ARG 112 112 112 ARG ARG A . n C 1 113 GLU 113 113 113 GLU GLU A . n C 1 114 THR 114 114 114 THR THR A . n C 1 115 VAL 115 115 115 VAL VAL A . n C 1 116 LEU 116 116 116 LEU LEU A . n C 1 117 GLU 117 117 117 GLU GLU A . n C 1 118 TYR 118 118 118 TYR TYR A . n C 1 119 LEU 119 119 119 LEU LEU A . n C 1 120 VAL 120 120 120 VAL VAL A . n C 1 121 SER 121 121 121 SER SER A . n C 1 122 PHE 122 122 122 PHE PHE A . n C 1 123 GLY 123 123 123 GLY GLY A . n C 1 124 VAL 124 124 124 VAL VAL A . n C 1 125 TRP 125 125 125 TRP TRP A . n C 1 126 ILE 126 126 126 ILE ILE A . n C 1 127 ARG 127 127 127 ARG ARG A . n C 1 128 THR 128 128 128 THR THR A . n C 1 129 PRO 129 129 129 PRO PRO A . n C 1 130 PRO 130 130 130 PRO PRO A . n C 1 131 ALA 131 131 131 ALA ALA A . n C 1 132 TYR 132 132 132 TYR TYR A . n C 1 133 ARG 133 133 133 ARG ARG A . n C 1 134 PRO 134 134 134 PRO PRO A . n C 1 135 PRO 135 135 135 PRO PRO A . n C 1 136 ASN 136 136 136 ASN ASN A . n C 1 137 ALA 137 137 137 ALA ALA A . n C 1 138 PRO 138 138 138 PRO PRO A . n C 1 139 ILE 139 139 139 ILE ILE A . n C 1 140 LEU 140 140 140 LEU LEU A . n C 1 141 SER 141 141 141 SER SER A . n C 1 142 THR 142 142 142 THR THR A . n C 1 143 LEU 143 143 143 LEU LEU A . n C 1 144 PRO 144 144 144 PRO PRO A . n C 1 145 GLU 145 145 ? ? ? A . n C 1 146 THR 146 146 ? ? ? A . n C 1 147 THR 147 147 ? ? ? A . n C 1 148 VAL 148 148 ? ? ? A . n C 1 149 VAL 149 149 ? ? ? A . n C 1 150 CYS 150 150 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id E9D _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id E9D _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BVN _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6BVN _struct.title 'Cryo-EM Structure of Hepatitis B virus T=3 capsid in complex with the fluorescent allosteric modulator HAP-TAMRA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BVN _struct_keywords.text 'capsid, CpAM, antiviral, fluorescent, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CAPSD_HBVD1 _struct_ref.pdbx_db_accession P03147 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNLEDPA SRDLVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVV ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6BVN C 1 ? 149 ? P03147 1 ? 149 ? 1 149 2 1 6BVN B 1 ? 149 ? P03147 1 ? 149 ? 1 149 3 1 6BVN A 1 ? 149 ? P03147 1 ? 149 ? 1 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6BVN ALA C 48 ? UNP P03147 CYS 48 'engineered mutation' 48 1 1 6BVN ALA C 61 ? UNP P03147 CYS 61 'engineered mutation' 61 2 1 6BVN ALA C 107 ? UNP P03147 CYS 107 'engineered mutation' 107 3 1 6BVN CYS C 150 ? UNP P03147 ? ? 'expression tag' 150 4 2 6BVN ALA B 48 ? UNP P03147 CYS 48 'engineered mutation' 48 5 2 6BVN ALA B 61 ? UNP P03147 CYS 61 'engineered mutation' 61 6 2 6BVN ALA B 107 ? UNP P03147 CYS 107 'engineered mutation' 107 7 2 6BVN CYS B 150 ? UNP P03147 ? ? 'expression tag' 150 8 3 6BVN ALA A 48 ? UNP P03147 CYS 48 'engineered mutation' 48 9 3 6BVN ALA A 61 ? UNP P03147 CYS 61 'engineered mutation' 61 10 3 6BVN ALA A 107 ? UNP P03147 CYS 107 'engineered mutation' 107 11 3 6BVN CYS A 150 ? UNP P03147 ? ? 'expression tag' 150 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 180-meric 180 2 'icosahedral asymmetric unit' ? trimeric 3 3 'icosahedral pentamer' ? pentadecameric 15 4 'icosahedral 23 hexamer' ? octadecameric 18 5 'icosahedral asymmetric unit, std point frame' ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D 2 1 A,B,C,D 3 '(1-5)' A,B,C,D 4 '(1,2,6,10,23,24)' A,B,C,D 5 P A,B,C,D # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 microscopy ? 2 1 'gel filtration' ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.30959628 0.49995899 -0.80882084 149.97189 -0.80849970 0.30929948 0.50066163 0.25458 0.50047815 0.80893439 0.30845872 -394.60206 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901731 -0.49948020 0.80933790 94.05324 0.50027812 0.80910898 0.30832525 -150.41480 -0.80884491 0.30961620 0.49990770 243.33603 3 'point symmetry operation' ? ? -0.80901617 -0.30789782 0.50069131 395.18761 0.30998681 0.50024082 0.80849694 -150.03734 -0.49940067 0.80929480 -0.30925864 242.33624 4 'point symmetry operation' ? ? -0.80901616 0.30998681 -0.49940067 487.24564 -0.30789781 0.50024081 0.80929479 0.61074 0.50069131 0.80849695 -0.30925864 -1.61770 5 'point symmetry operation' ? ? 0.30901732 0.50027813 -0.80884492 243.00626 -0.49948020 0.80910897 0.30961621 93.33892 0.80933790 0.30832526 0.49990770 -151.38973 6 'point symmetry operation' ? ? -0.49904325 0.80970797 0.30875370 93.27314 0.80970797 0.30874968 0.49904573 -150.11707 0.30875370 0.49904574 -0.80970643 242.34586 7 'point symmetry operation' ? ? 0.00113233 0.99999936 0.00010715 -0.32466 0.00102389 -0.00010832 0.99999947 1.03388 0.99999883 -0.00113220 -0.00102401 -0.70946 8 'point symmetry operation' ? ? 0.50054104 0.80857606 0.30929505 -150.60679 -0.80858227 0.30901699 0.50070271 244.48237 0.30927879 -0.50071275 0.80847596 93.26479 9 'point symmetry operation' ? ? 0.30901703 0.49997857 0.80903023 -149.88846 -0.50026232 0.80892493 -0.30883340 243.79086 -0.80885480 -0.30929256 0.50009203 394.39940 10 'point symmetry operation' ? ? -0.30876003 0.50067812 0.80869565 0.83763 0.49989605 0.80875972 -0.30985747 -0.08500 -0.80917932 0.30859217 -0.49999969 486.53657 11 'point symmetry operation' ? ? 0.30734353 -0.50013707 -0.80956955 487.84090 -0.50013708 -0.80866766 0.30970877 488.45476 -0.80956955 0.30970876 -0.49867587 486.03768 12 'point symmetry operation' ? ? 0.49958305 -0.80883326 -0.31017018 394.97813 -0.80961611 -0.30860084 -0.49928675 638.41413 0.30812096 0.50055397 -0.80901619 241.96445 13 'point symmetry operation' ? ? 0.00061779 -0.99999981 -0.00010868 488.15044 -0.00072609 0.00010824 -0.99999973 487.19078 0.99999955 0.00061787 -0.00072603 -1.20929 14 'point symmetry operation' ? ? -0.49999921 -0.80945105 -0.30787951 638.59687 0.80867447 -0.30916587 -0.50046185 243.77025 0.30991352 -0.49920484 0.80916509 92.57430 15 'point symmetry operation' ? ? -0.31043228 -0.50051889 -0.80815385 638.40556 0.50002150 -0.80901687 0.30898252 244.55143 -0.80846168 -0.30817617 0.50141516 393.70949 16 'point symmetry operation' ? ? -0.80830028 -0.30957089 0.50081586 395.39107 -0.30957088 -0.50008202 -0.80875450 638.25686 0.50081585 -0.80875450 0.30838230 243.18198 17 'point symmetry operation' ? ? -0.80973268 0.30831410 -0.49927487 487.79839 0.30831411 -0.50039982 -0.80903796 487.56134 -0.49927488 -0.80903797 0.31013250 486.97450 18 'point symmetry operation' ? ? 0.30785733 0.49932156 -0.80987768 243.77384 0.49932155 -0.80936604 -0.30919992 394.95874 -0.80987767 -0.30919992 -0.49849128 637.17378 19 'point symmetry operation' ? ? 0.99999834 -0.00051433 -0.00175004 0.55105 -0.00051434 -0.99999987 0.00000045 488.42270 -0.00175003 0.00000045 -0.99999847 486.20951 20 'point symmetry operation' ? ? 0.31017500 -0.50043736 0.80830311 94.25565 -0.50043736 -0.80885183 -0.30874126 638.78921 0.80830311 -0.30874126 -0.50132317 242.70918 21 'point symmetry operation' ? ? -0.30927411 -0.49986215 0.80900394 245.16879 -0.49956263 0.80927406 0.30905125 93.45596 -0.80918892 -0.30856659 -0.49999995 637.21745 22 'point symmetry operation' ? ? -0.99999987 0.00051407 -0.00000008 488.12703 0.00051408 0.99999982 -0.00029824 -0.05302 -0.00000008 -0.00029824 -0.99999996 485.85558 23 'point symmetry operation' ? ? -0.30876002 0.49989605 -0.80917933 393.99645 0.50067813 0.80875972 0.30859216 -150.49201 0.80869565 -0.30985746 -0.49999970 242.56441 24 'point symmetry operation' ? ? 0.80917545 0.30815487 -0.50027560 92.86232 0.30971980 0.49984108 0.80884642 -149.95944 0.49930826 -0.80944393 0.30901746 243.56407 25 'point symmetry operation' ? ? 0.80885773 -0.30972967 0.49981666 0.88177 -0.30846298 0.50015895 0.80913015 0.80869 -0.50059940 -0.80864613 0.30901730 487.47306 26 'point symmetry operation' ? ? -0.00061825 -0.00102402 -0.99999928 487.41842 0.99999972 -0.00040602 -0.00061783 0.27162 -0.00040539 -0.99999940 0.00102427 486.89005 27 'point symmetry operation' ? ? 0.80814099 -0.31013572 -0.50072345 244.17845 0.30931382 -0.49999987 0.80890363 94.23558 -0.50123157 -0.80858887 -0.30814112 637.51587 28 'point symmetry operation' ? ? 0.49958305 -0.80961612 0.30812095 244.99168 -0.80883326 -0.30860085 0.50055397 395.37032 -0.31017018 -0.49928676 -0.80901619 637.01531 29 'point symmetry operation' ? ? -0.49987549 -0.80920027 0.30873844 488.73426 -0.80920026 0.30928410 -0.49953806 487.51788 0.30873844 -0.49953806 -0.80940862 486.08013 30 'point symmetry operation' ? ? -0.80901689 -0.30946288 -0.49972433 638.56223 0.30872000 0.49975898 -0.80927926 243.33346 0.50018360 -0.80899549 -0.30877608 393.29761 31 'point symmetry operation' ? ? -0.49999875 0.80945741 -0.30786353 243.33858 -0.80848378 -0.30886809 0.50095357 395.25319 0.31041135 0.49937883 0.80886685 -151.27763 32 'point symmetry operation' ? ? 0.49945941 0.80935920 -0.30899513 -0.35658 -0.80954917 0.30901704 -0.49913785 487.57105 -0.30849705 0.49944586 0.80955754 -0.36996 33 'point symmetry operation' ? ? 0.80917545 0.30971981 0.49930826 -150.31005 0.30815487 0.49984108 -0.80944393 243.49137 -0.50027559 0.80884643 0.30901746 92.48536 34 'point symmetry operation' ? ? 0.00113231 0.00102389 0.99999884 0.70877 0.99999935 -0.00010831 -0.00113222 0.32397 0.00010716 0.99999947 -0.00102401 -1.03457 35 'point symmetry operation' ? ? -0.80798184 0.30987871 0.50113924 243.99701 0.30987871 -0.49991806 0.80873797 94.11793 0.50113924 0.80873798 0.30789990 -151.68838 36 'point symmetry operation' ? ? 0.80989111 -0.30857124 0.49885888 0.57930 0.30804669 -0.49999994 -0.80938698 487.61377 0.49918297 0.80918715 -0.30989116 -1.26435 37 'point symmetry operation' ? ? -0.30760054 -0.49973754 0.80971866 244.55621 0.49972127 -0.80901699 -0.30946754 394.84094 0.80972870 0.30944126 0.49858354 -151.43598 38 'point symmetry operation' ? ? -0.99999847 0.00000026 0.00175012 487.82702 0.00000026 -0.99999996 0.00029779 488.22487 0.00175011 0.00029779 0.99999842 -0.49957 39 'point symmetry operation' ? ? -0.31043228 0.50002151 -0.80846168 394.19975 -0.50051889 -0.80901687 -0.30817615 638.71215 -0.80815385 0.30898251 0.50141516 242.95589 40 'point symmetry operation' ? ? 0.80814100 0.30931384 -0.50123157 93.06410 -0.31013573 -0.49999987 -0.80858886 638.33447 -0.50072344 0.80890363 -0.30814112 242.48323 41 'point symmetry operation' ? ? -0.30927410 -0.49956263 -0.80918892 638.14076 -0.49986213 0.80927406 -0.30856658 243.54312 0.80900394 0.30905125 -0.49999996 91.38350 42 'point symmetry operation' ? ? 0.30901704 -0.50026232 -0.80885480 487.28932 0.49997857 0.80892494 -0.30929255 -0.28269 0.80903022 -0.30883339 0.50009202 -0.68094 43 'point symmetry operation' ? ? 0.49945940 -0.80954918 -0.30849705 394.77671 0.80935919 0.30901705 0.49944585 -150.19439 -0.30899514 -0.49913786 0.80955754 243.55449 44 'point symmetry operation' ? ? -0.00113188 -0.99999928 0.00040692 488.45222 0.00072623 0.00040610 0.99999965 0.98090 -0.99999910 0.00113216 0.00072577 486.56474 45 'point symmetry operation' ? ? -0.50095667 -0.80841706 -0.30903767 638.85947 -0.80841705 0.30958194 0.50062050 244.32407 -0.30903767 0.50062050 -0.80862527 392.51789 46 'point symmetry operation' ? ? -0.49999877 -0.80848379 0.31041135 488.18309 0.80945740 -0.30886808 0.49937883 0.65373 -0.30786353 0.50095356 0.80886685 -0.72496 47 'point symmetry operation' ? ? -0.81004967 -0.30830362 -0.49876689 638.29877 -0.30830362 -0.49960011 0.80953605 244.76101 -0.49876689 0.80953604 0.30964978 91.79510 48 'point symmetry operation' ? ? -0.00113186 0.00072623 -0.99999910 487.11644 -0.99999927 0.00040610 0.00113217 487.90059 0.00040693 0.99999966 0.00072577 -1.53280 49 'point symmetry operation' ? ? 0.80885774 -0.30846298 -0.50059940 243.56494 -0.30972967 0.50015896 -0.80864612 394.06183 0.49981667 0.80913016 0.30901730 -151.73267 50 'point symmetry operation' ? ? 0.50054103 -0.80858228 0.30927880 244.22416 0.80857606 0.30901700 -0.50071275 92.92671 0.30929505 0.50070271 0.80847595 -151.23339 51 'point symmetry operation' ? ? 0.80989111 0.30804669 0.49918296 -150.04584 -0.30857125 -0.49999995 0.80918714 245.00871 0.49885888 -0.80938698 -0.30989116 393.98744 52 'point symmetry operation' ? ? 0.00061780 -0.00072610 0.99999955 1.26146 -0.99999980 0.00010823 0.00061787 488.09836 -0.00010869 -0.99999973 -0.00072603 487.24283 53 'point symmetry operation' ? ? -0.80901689 0.30871999 0.50018361 244.76470 -0.30946286 0.49975898 -0.80899549 394.17921 -0.49972433 -0.80927927 -0.30877608 637.47070 54 'point symmetry operation' ? ? -0.50012533 0.80874099 -0.30953622 243.95068 0.80874099 0.30845194 -0.50079479 93.04433 -0.30953622 -0.50079479 -0.80832661 637.06123 55 'point symmetry operation' ? ? 0.50041484 0.80832486 -0.31015466 -0.05566 0.80929203 -0.30943306 0.49929708 0.85189 0.30762214 -0.50086136 -0.80901577 486.58031 56 'point symmetry operation' ? ? -0.00061824 0.99999973 -0.00040539 0.22710 -0.00102402 -0.00040603 -0.99999939 487.38899 -0.99999928 -0.00061783 0.00102427 486.91954 57 'point symmetry operation' ? ? 0.50041484 0.80929205 0.30762214 -150.34445 0.80832485 -0.30943306 -0.50086136 244.01787 -0.31015465 0.49929708 -0.80901577 393.20853 58 'point symmetry operation' ? ? 0.31068935 0.50010296 0.80831254 -150.15276 0.50010295 -0.80918212 0.30841746 244.70914 0.80831255 0.30841747 -0.50150723 92.07313 59 'point symmetry operation' ? ? -0.30760053 0.49972127 0.80972870 0.53726 -0.49973754 -0.80901700 0.30944125 488.50749 0.80971865 -0.30946753 0.49858354 -0.32779 60 'point symmetry operation' ? ? -0.49999921 0.80867447 0.30991353 93.47712 -0.80945104 -0.30916588 -0.49920483 638.49188 -0.30787952 -0.50046185 0.80916509 243.70072 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 6 ? GLY A 10 ? TYR C 6 GLY C 10 5 ? 5 HELX_P HELX_P2 AA2 THR A 12 ? LEU A 19 ? THR C 12 LEU C 19 1 ? 8 HELX_P HELX_P3 AA3 PRO A 20 ? PHE A 24 ? PRO C 20 PHE C 24 5 ? 5 HELX_P HELX_P4 AA4 SER A 26 ? TYR A 38 ? SER C 26 TYR C 38 1 ? 13 HELX_P HELX_P5 AA5 TYR A 38 ? GLU A 43 ? TYR C 38 GLU C 43 1 ? 6 HELX_P HELX_P6 AA6 SER A 49 ? ASN A 75 ? SER C 49 ASN C 75 1 ? 27 HELX_P HELX_P7 AA7 ASP A 78 ? VAL A 93 ? ASP C 78 VAL C 93 1 ? 16 HELX_P HELX_P8 AA8 GLY A 94 ? ILE A 126 ? GLY C 94 ILE C 126 1 ? 33 HELX_P HELX_P9 AA9 GLU B 14 ? PHE B 18 ? GLU B 14 PHE B 18 5 ? 5 HELX_P HELX_P10 AB1 SER B 26 ? TYR B 38 ? SER B 26 TYR B 38 1 ? 13 HELX_P HELX_P11 AB2 TYR B 38 ? GLU B 43 ? TYR B 38 GLU B 43 1 ? 6 HELX_P HELX_P12 AB3 SER B 49 ? LEU B 76 ? SER B 49 LEU B 76 1 ? 28 HELX_P HELX_P13 AB4 ASP B 78 ? GLN B 99 ? ASP B 78 GLN B 99 1 ? 22 HELX_P HELX_P14 AB5 GLN B 99 ? GLY B 111 ? GLN B 99 GLY B 111 1 ? 13 HELX_P HELX_P15 AB6 GLY B 111 ? THR B 128 ? GLY B 111 THR B 128 1 ? 18 HELX_P HELX_P16 AB7 PRO B 129 ? ARG B 133 ? PRO B 129 ARG B 133 5 ? 5 HELX_P HELX_P17 AB8 GLU C 14 ? PHE C 18 ? GLU A 14 PHE A 18 5 ? 5 HELX_P HELX_P18 AB9 SER C 26 ? TYR C 38 ? SER A 26 TYR A 38 1 ? 13 HELX_P HELX_P19 AC1 TYR C 38 ? GLU C 43 ? TYR A 38 GLU A 43 1 ? 6 HELX_P HELX_P20 AC2 SER C 49 ? ASN C 75 ? SER A 49 ASN A 75 1 ? 27 HELX_P HELX_P21 AC3 ASP C 78 ? PHE C 97 ? ASP A 78 PHE A 97 1 ? 20 HELX_P HELX_P22 AC4 PHE C 97 ? GLY C 111 ? PHE A 97 GLY A 111 1 ? 15 HELX_P HELX_P23 AC5 GLY C 111 ? THR C 128 ? GLY A 111 THR A 128 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id E9D _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'binding site for residue E9D B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 VAL A 124 ? VAL C 124 . ? 1_555 ? 2 AC1 17 TYR A 132 ? TYR C 132 . ? 1_555 ? 3 AC1 17 PRO A 134 ? PRO C 134 . ? 1_555 ? 4 AC1 17 PHE B 23 ? PHE B 23 . ? 1_555 ? 5 AC1 17 PRO B 25 ? PRO B 25 . ? 1_555 ? 6 AC1 17 ASP B 29 ? ASP B 29 . ? 1_555 ? 7 AC1 17 LEU B 30 ? LEU B 30 . ? 1_555 ? 8 AC1 17 THR B 33 ? THR B 33 . ? 1_555 ? 9 AC1 17 TRP B 102 ? TRP B 102 . ? 1_555 ? 10 AC1 17 ILE B 105 ? ILE B 105 . ? 1_555 ? 11 AC1 17 SER B 106 ? SER B 106 . ? 1_555 ? 12 AC1 17 THR B 109 ? THR B 109 . ? 1_555 ? 13 AC1 17 PHE B 110 ? PHE B 110 . ? 1_555 ? 14 AC1 17 TYR B 118 ? TYR B 118 . ? 1_555 ? 15 AC1 17 ASN B 136 ? ASN B 136 . ? 1_555 ? 16 AC1 17 ILE B 139 ? ILE B 139 . ? 1_555 ? 17 AC1 17 LEU B 140 ? LEU B 140 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 14 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 17 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER C 141 ? ? -170.62 136.93 2 1 TYR B 6 ? ? -90.96 45.04 3 1 ALA B 11 ? ? -163.17 -169.70 4 1 THR B 91 ? ? -93.96 -60.50 5 1 ALA A 11 ? ? -69.89 -179.85 6 1 SER A 141 ? ? -172.10 144.15 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 47 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 48 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -142.38 # _pdbx_point_symmetry.entry_id 6BVN _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.entry_id 6BVN _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation Coefficient' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 1-143 _em_3d_fitting_list.pdb_entry_id 5D7Y _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 5D7Y # _em_3d_reconstruction.entry_id 6BVN _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 16008 _em_3d_reconstruction.resolution 4.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Hepatitis B virus T=3 capsid' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6BVN _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty YES _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate OTHER _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.entry_id 6BVN _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6BVN _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLU 145 ? A GLU 145 2 1 Y 1 C THR 146 ? A THR 146 3 1 Y 1 C THR 147 ? A THR 147 4 1 Y 1 C VAL 148 ? A VAL 148 5 1 Y 1 C VAL 149 ? A VAL 149 6 1 Y 1 C CYS 150 ? A CYS 150 7 1 Y 1 B GLU 145 ? B GLU 145 8 1 Y 1 B THR 146 ? B THR 146 9 1 Y 1 B THR 147 ? B THR 147 10 1 Y 1 B VAL 148 ? B VAL 148 11 1 Y 1 B VAL 149 ? B VAL 149 12 1 Y 1 B CYS 150 ? B CYS 150 13 1 Y 1 A GLU 145 ? C GLU 145 14 1 Y 1 A THR 146 ? C THR 146 15 1 Y 1 A THR 147 ? C THR 147 16 1 Y 1 A VAL 148 ? C VAL 148 17 1 Y 1 A VAL 149 ? C VAL 149 18 1 Y 1 A CYS 150 ? C CYS 150 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 E9D C10 C Y N 88 E9D C13 C Y N 89 E9D C15 C Y N 90 E9D C17 C Y N 91 E9D C20 C N N 92 E9D C21 C N N 93 E9D C22 C N N 94 E9D C24 C N N 95 E9D C26 C Y N 96 E9D C28 C Y N 97 E9D C01 C N N 98 E9D C02 C N N 99 E9D C03 C N N 100 E9D C04 C N N 101 E9D C05 C N N 102 E9D C06 C N N 103 E9D C07 C N N 104 E9D C08 C Y N 105 E9D C09 C Y N 106 E9D C11 C Y N 107 E9D C12 C Y N 108 E9D C14 C Y N 109 E9D C16 C Y N 110 E9D C18 C Y N 111 E9D C19 C Y N 112 E9D C23 C N N 113 E9D C25 C N N 114 E9D C27 C Y N 115 E9D C29 C Y N 116 E9D C30 C Y N 117 E9D C31 C Y N 118 E9D C32 C Y N 119 E9D C33 C Y N 120 E9D C34 C Y N 121 E9D C35 C Y N 122 E9D C36 C Y N 123 E9D C37 C Y N 124 E9D C38 C Y N 125 E9D C39 C Y N 126 E9D C40 C Y N 127 E9D C41 C N N 128 E9D C42 C N N 129 E9D C43 C N N 130 E9D C44 C N N 131 E9D C45 C N N 132 E9D C46 C N N 133 E9D C47 C N N 134 E9D C48 C N N 135 E9D C49 C N N 136 E9D C50 C N N 137 E9D C51 C N N 138 E9D F01 F N N 139 E9D N01 N N N 140 E9D N02 N N N 141 E9D N03 N Y N 142 E9D N04 N Y N 143 E9D N05 N Y N 144 E9D N06 N N N 145 E9D N07 N N N 146 E9D N08 N N N 147 E9D O01 O N N 148 E9D O02 O N N 149 E9D O03 O N N 150 E9D O04 O N N 151 E9D O05 O N N 152 E9D O06 O N N 153 E9D O07 O N N 154 E9D CL1 CL N N 155 E9D H10 H N N 156 E9D H13 H N N 157 E9D H15 H N N 158 E9D H17 H N N 159 E9D H1 H N N 160 E9D H2 H N N 161 E9D H3 H N N 162 E9D H4 H N N 163 E9D H5 H N N 164 E9D H6 H N N 165 E9D H7 H N N 166 E9D H8 H N N 167 E9D H9 H N N 168 E9D H26 H N N 169 E9D H02 H N N 170 E9D H03 H N N 171 E9D H06 H N N 172 E9D H11 H N N 173 E9D H18 H N N 174 E9D H12 H N N 175 E9D H14 H N N 176 E9D H16 H N N 177 E9D H27 H N N 178 E9D H30 H N N 179 E9D H37 H N N 180 E9D H38 H N N 181 E9D H39 H N N 182 E9D H40 H N N 183 E9D H19 H N N 184 E9D H20 H N N 185 E9D H21 H N N 186 E9D H22 H N N 187 E9D H23 H N N 188 E9D H24 H N N 189 E9D H25 H N N 190 E9D H28 H N N 191 E9D H29 H N N 192 E9D H31 H N N 193 E9D H32 H N N 194 E9D H33 H N N 195 E9D H34 H N N 196 E9D H35 H N N 197 E9D H36 H N N 198 E9D H41 H N N 199 E9D H42 H N N 200 E9D H43 H N N 201 E9D H44 H N N 202 E9D H51 H N N 203 GLN N N N N 204 GLN CA C N S 205 GLN C C N N 206 GLN O O N N 207 GLN CB C N N 208 GLN CG C N N 209 GLN CD C N N 210 GLN OE1 O N N 211 GLN NE2 N N N 212 GLN OXT O N N 213 GLN H H N N 214 GLN H2 H N N 215 GLN HA H N N 216 GLN HB2 H N N 217 GLN HB3 H N N 218 GLN HG2 H N N 219 GLN HG3 H N N 220 GLN HE21 H N N 221 GLN HE22 H N N 222 GLN HXT H N N 223 GLU N N N N 224 GLU CA C N S 225 GLU C C N N 226 GLU O O N N 227 GLU CB C N N 228 GLU CG C N N 229 GLU CD C N N 230 GLU OE1 O N N 231 GLU OE2 O N N 232 GLU OXT O N N 233 GLU H H N N 234 GLU H2 H N N 235 GLU HA H N N 236 GLU HB2 H N N 237 GLU HB3 H N N 238 GLU HG2 H N N 239 GLU HG3 H N N 240 GLU HE2 H N N 241 GLU HXT H N N 242 GLY N N N N 243 GLY CA C N N 244 GLY C C N N 245 GLY O O N N 246 GLY OXT O N N 247 GLY H H N N 248 GLY H2 H N N 249 GLY HA2 H N N 250 GLY HA3 H N N 251 GLY HXT H N N 252 HIS N N N N 253 HIS CA C N S 254 HIS C C N N 255 HIS O O N N 256 HIS CB C N N 257 HIS CG C Y N 258 HIS ND1 N Y N 259 HIS CD2 C Y N 260 HIS CE1 C Y N 261 HIS NE2 N Y N 262 HIS OXT O N N 263 HIS H H N N 264 HIS H2 H N N 265 HIS HA H N N 266 HIS HB2 H N N 267 HIS HB3 H N N 268 HIS HD1 H N N 269 HIS HD2 H N N 270 HIS HE1 H N N 271 HIS HE2 H N N 272 HIS HXT H N N 273 ILE N N N N 274 ILE CA C N S 275 ILE C C N N 276 ILE O O N N 277 ILE CB C N S 278 ILE CG1 C N N 279 ILE CG2 C N N 280 ILE CD1 C N N 281 ILE OXT O N N 282 ILE H H N N 283 ILE H2 H N N 284 ILE HA H N N 285 ILE HB H N N 286 ILE HG12 H N N 287 ILE HG13 H N N 288 ILE HG21 H N N 289 ILE HG22 H N N 290 ILE HG23 H N N 291 ILE HD11 H N N 292 ILE HD12 H N N 293 ILE HD13 H N N 294 ILE HXT H N N 295 LEU N N N N 296 LEU CA C N S 297 LEU C C N N 298 LEU O O N N 299 LEU CB C N N 300 LEU CG C N N 301 LEU CD1 C N N 302 LEU CD2 C N N 303 LEU OXT O N N 304 LEU H H N N 305 LEU H2 H N N 306 LEU HA H N N 307 LEU HB2 H N N 308 LEU HB3 H N N 309 LEU HG H N N 310 LEU HD11 H N N 311 LEU HD12 H N N 312 LEU HD13 H N N 313 LEU HD21 H N N 314 LEU HD22 H N N 315 LEU HD23 H N N 316 LEU HXT H N N 317 LYS N N N N 318 LYS CA C N S 319 LYS C C N N 320 LYS O O N N 321 LYS CB C N N 322 LYS CG C N N 323 LYS CD C N N 324 LYS CE C N N 325 LYS NZ N N N 326 LYS OXT O N N 327 LYS H H N N 328 LYS H2 H N N 329 LYS HA H N N 330 LYS HB2 H N N 331 LYS HB3 H N N 332 LYS HG2 H N N 333 LYS HG3 H N N 334 LYS HD2 H N N 335 LYS HD3 H N N 336 LYS HE2 H N N 337 LYS HE3 H N N 338 LYS HZ1 H N N 339 LYS HZ2 H N N 340 LYS HZ3 H N N 341 LYS HXT H N N 342 MET N N N N 343 MET CA C N S 344 MET C C N N 345 MET O O N N 346 MET CB C N N 347 MET CG C N N 348 MET SD S N N 349 MET CE C N N 350 MET OXT O N N 351 MET H H N N 352 MET H2 H N N 353 MET HA H N N 354 MET HB2 H N N 355 MET HB3 H N N 356 MET HG2 H N N 357 MET HG3 H N N 358 MET HE1 H N N 359 MET HE2 H N N 360 MET HE3 H N N 361 MET HXT H N N 362 PHE N N N N 363 PHE CA C N S 364 PHE C C N N 365 PHE O O N N 366 PHE CB C N N 367 PHE CG C Y N 368 PHE CD1 C Y N 369 PHE CD2 C Y N 370 PHE CE1 C Y N 371 PHE CE2 C Y N 372 PHE CZ C Y N 373 PHE OXT O N N 374 PHE H H N N 375 PHE H2 H N N 376 PHE HA H N N 377 PHE HB2 H N N 378 PHE HB3 H N N 379 PHE HD1 H N N 380 PHE HD2 H N N 381 PHE HE1 H N N 382 PHE HE2 H N N 383 PHE HZ H N N 384 PHE HXT H N N 385 PRO N N N N 386 PRO CA C N S 387 PRO C C N N 388 PRO O O N N 389 PRO CB C N N 390 PRO CG C N N 391 PRO CD C N N 392 PRO OXT O N N 393 PRO H H N N 394 PRO HA H N N 395 PRO HB2 H N N 396 PRO HB3 H N N 397 PRO HG2 H N N 398 PRO HG3 H N N 399 PRO HD2 H N N 400 PRO HD3 H N N 401 PRO HXT H N N 402 SER N N N N 403 SER CA C N S 404 SER C C N N 405 SER O O N N 406 SER CB C N N 407 SER OG O N N 408 SER OXT O N N 409 SER H H N N 410 SER H2 H N N 411 SER HA H N N 412 SER HB2 H N N 413 SER HB3 H N N 414 SER HG H N N 415 SER HXT H N N 416 THR N N N N 417 THR CA C N S 418 THR C C N N 419 THR O O N N 420 THR CB C N R 421 THR OG1 O N N 422 THR CG2 C N N 423 THR OXT O N N 424 THR H H N N 425 THR H2 H N N 426 THR HA H N N 427 THR HB H N N 428 THR HG1 H N N 429 THR HG21 H N N 430 THR HG22 H N N 431 THR HG23 H N N 432 THR HXT H N N 433 TRP N N N N 434 TRP CA C N S 435 TRP C C N N 436 TRP O O N N 437 TRP CB C N N 438 TRP CG C Y N 439 TRP CD1 C Y N 440 TRP CD2 C Y N 441 TRP NE1 N Y N 442 TRP CE2 C Y N 443 TRP CE3 C Y N 444 TRP CZ2 C Y N 445 TRP CZ3 C Y N 446 TRP CH2 C Y N 447 TRP OXT O N N 448 TRP H H N N 449 TRP H2 H N N 450 TRP HA H N N 451 TRP HB2 H N N 452 TRP HB3 H N N 453 TRP HD1 H N N 454 TRP HE1 H N N 455 TRP HE3 H N N 456 TRP HZ2 H N N 457 TRP HZ3 H N N 458 TRP HH2 H N N 459 TRP HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 VAL N N N N 485 VAL CA C N S 486 VAL C C N N 487 VAL O O N N 488 VAL CB C N N 489 VAL CG1 C N N 490 VAL CG2 C N N 491 VAL OXT O N N 492 VAL H H N N 493 VAL H2 H N N 494 VAL HA H N N 495 VAL HB H N N 496 VAL HG11 H N N 497 VAL HG12 H N N 498 VAL HG13 H N N 499 VAL HG21 H N N 500 VAL HG22 H N N 501 VAL HG23 H N N 502 VAL HXT H N N 503 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 E9D F01 C31 sing N N 83 E9D CL1 C29 sing N N 84 E9D C30 C31 doub Y N 85 E9D C30 C29 sing Y N 86 E9D C31 C26 sing Y N 87 E9D C29 C28 doub Y N 88 E9D C42 O06 sing N N 89 E9D O06 C41 sing N N 90 E9D O05 C41 doub N N 91 E9D C26 C27 doub Y N 92 E9D C41 C33 sing N N 93 E9D C28 C27 sing Y N 94 E9D C28 C32 sing N N 95 E9D C32 C33 doub Y N 96 E9D C32 N04 sing Y N 97 E9D C33 C34 sing Y N 98 E9D N04 C35 doub Y N 99 E9D C34 C43 sing N N 100 E9D C34 N03 doub Y N 101 E9D C43 N06 sing N N 102 E9D C44 N06 sing N N 103 E9D C44 C45 sing N N 104 E9D N06 C47 sing N N 105 E9D C35 N03 sing Y N 106 E9D C35 C36 sing N N 107 E9D C45 N07 sing N N 108 E9D C36 C40 doub Y N 109 E9D C36 N05 sing Y N 110 E9D C47 C46 sing N N 111 E9D C40 C39 sing Y N 112 E9D N05 C37 doub Y N 113 E9D N07 C46 sing N N 114 E9D N07 C48 sing N N 115 E9D C49 C50 sing N N 116 E9D C49 C48 sing N N 117 E9D C39 C38 doub Y N 118 E9D C50 C51 sing N N 119 E9D C37 C38 sing Y N 120 E9D C48 O07 doub N N 121 E9D C51 N08 sing N N 122 E9D N08 C25 sing N N 123 E9D O04 C25 doub N N 124 E9D C25 C16 sing N N 125 E9D C16 C17 doub Y N 126 E9D C16 C15 sing Y N 127 E9D C17 C18 sing Y N 128 E9D C24 N01 sing N N 129 E9D C02 C03 doub N N 130 E9D C02 C01 sing N N 131 E9D C15 C14 doub Y N 132 E9D C18 C19 doub Y N 133 E9D C03 C04 sing N N 134 E9D N01 C01 doub N N 135 E9D N01 C23 sing N N 136 E9D C01 C06 sing N N 137 E9D C14 C19 sing Y N 138 E9D C14 C07 sing N N 139 E9D C19 C20 sing N N 140 E9D C04 C07 doub N N 141 E9D C04 C05 sing N N 142 E9D C07 C08 sing N N 143 E9D C06 C05 doub N N 144 E9D C20 O02 doub N N 145 E9D C20 O03 sing N N 146 E9D C05 O01 sing N N 147 E9D C08 C10 doub Y N 148 E9D C08 C09 sing Y N 149 E9D O01 C09 sing N N 150 E9D C10 C11 sing Y N 151 E9D C09 C13 doub Y N 152 E9D C11 C12 doub Y N 153 E9D C13 C12 sing Y N 154 E9D C12 N02 sing N N 155 E9D N02 C21 sing N N 156 E9D N02 C22 sing N N 157 E9D C10 H10 sing N N 158 E9D C13 H13 sing N N 159 E9D C15 H15 sing N N 160 E9D C17 H17 sing N N 161 E9D C21 H1 sing N N 162 E9D C21 H2 sing N N 163 E9D C21 H3 sing N N 164 E9D C22 H4 sing N N 165 E9D C22 H5 sing N N 166 E9D C22 H6 sing N N 167 E9D C24 H7 sing N N 168 E9D C24 H8 sing N N 169 E9D C24 H9 sing N N 170 E9D C26 H26 sing N N 171 E9D C02 H02 sing N N 172 E9D C03 H03 sing N N 173 E9D C06 H06 sing N N 174 E9D C11 H11 sing N N 175 E9D C18 H18 sing N N 176 E9D C23 H12 sing N N 177 E9D C23 H14 sing N N 178 E9D C23 H16 sing N N 179 E9D C27 H27 sing N N 180 E9D C30 H30 sing N N 181 E9D C37 H37 sing N N 182 E9D C38 H38 sing N N 183 E9D C39 H39 sing N N 184 E9D C40 H40 sing N N 185 E9D C42 H19 sing N N 186 E9D C42 H20 sing N N 187 E9D C42 H21 sing N N 188 E9D C43 H22 sing N N 189 E9D C43 H23 sing N N 190 E9D C44 H24 sing N N 191 E9D C44 H25 sing N N 192 E9D C45 H28 sing N N 193 E9D C45 H29 sing N N 194 E9D C46 H31 sing N N 195 E9D C46 H32 sing N N 196 E9D C47 H33 sing N N 197 E9D C47 H34 sing N N 198 E9D C49 H35 sing N N 199 E9D C49 H36 sing N N 200 E9D C50 H41 sing N N 201 E9D C50 H42 sing N N 202 E9D C51 H43 sing N N 203 E9D C51 H44 sing N N 204 E9D N08 H51 sing N N 205 GLN N CA sing N N 206 GLN N H sing N N 207 GLN N H2 sing N N 208 GLN CA C sing N N 209 GLN CA CB sing N N 210 GLN CA HA sing N N 211 GLN C O doub N N 212 GLN C OXT sing N N 213 GLN CB CG sing N N 214 GLN CB HB2 sing N N 215 GLN CB HB3 sing N N 216 GLN CG CD sing N N 217 GLN CG HG2 sing N N 218 GLN CG HG3 sing N N 219 GLN CD OE1 doub N N 220 GLN CD NE2 sing N N 221 GLN NE2 HE21 sing N N 222 GLN NE2 HE22 sing N N 223 GLN OXT HXT sing N N 224 GLU N CA sing N N 225 GLU N H sing N N 226 GLU N H2 sing N N 227 GLU CA C sing N N 228 GLU CA CB sing N N 229 GLU CA HA sing N N 230 GLU C O doub N N 231 GLU C OXT sing N N 232 GLU CB CG sing N N 233 GLU CB HB2 sing N N 234 GLU CB HB3 sing N N 235 GLU CG CD sing N N 236 GLU CG HG2 sing N N 237 GLU CG HG3 sing N N 238 GLU CD OE1 doub N N 239 GLU CD OE2 sing N N 240 GLU OE2 HE2 sing N N 241 GLU OXT HXT sing N N 242 GLY N CA sing N N 243 GLY N H sing N N 244 GLY N H2 sing N N 245 GLY CA C sing N N 246 GLY CA HA2 sing N N 247 GLY CA HA3 sing N N 248 GLY C O doub N N 249 GLY C OXT sing N N 250 GLY OXT HXT sing N N 251 HIS N CA sing N N 252 HIS N H sing N N 253 HIS N H2 sing N N 254 HIS CA C sing N N 255 HIS CA CB sing N N 256 HIS CA HA sing N N 257 HIS C O doub N N 258 HIS C OXT sing N N 259 HIS CB CG sing N N 260 HIS CB HB2 sing N N 261 HIS CB HB3 sing N N 262 HIS CG ND1 sing Y N 263 HIS CG CD2 doub Y N 264 HIS ND1 CE1 doub Y N 265 HIS ND1 HD1 sing N N 266 HIS CD2 NE2 sing Y N 267 HIS CD2 HD2 sing N N 268 HIS CE1 NE2 sing Y N 269 HIS CE1 HE1 sing N N 270 HIS NE2 HE2 sing N N 271 HIS OXT HXT sing N N 272 ILE N CA sing N N 273 ILE N H sing N N 274 ILE N H2 sing N N 275 ILE CA C sing N N 276 ILE CA CB sing N N 277 ILE CA HA sing N N 278 ILE C O doub N N 279 ILE C OXT sing N N 280 ILE CB CG1 sing N N 281 ILE CB CG2 sing N N 282 ILE CB HB sing N N 283 ILE CG1 CD1 sing N N 284 ILE CG1 HG12 sing N N 285 ILE CG1 HG13 sing N N 286 ILE CG2 HG21 sing N N 287 ILE CG2 HG22 sing N N 288 ILE CG2 HG23 sing N N 289 ILE CD1 HD11 sing N N 290 ILE CD1 HD12 sing N N 291 ILE CD1 HD13 sing N N 292 ILE OXT HXT sing N N 293 LEU N CA sing N N 294 LEU N H sing N N 295 LEU N H2 sing N N 296 LEU CA C sing N N 297 LEU CA CB sing N N 298 LEU CA HA sing N N 299 LEU C O doub N N 300 LEU C OXT sing N N 301 LEU CB CG sing N N 302 LEU CB HB2 sing N N 303 LEU CB HB3 sing N N 304 LEU CG CD1 sing N N 305 LEU CG CD2 sing N N 306 LEU CG HG sing N N 307 LEU CD1 HD11 sing N N 308 LEU CD1 HD12 sing N N 309 LEU CD1 HD13 sing N N 310 LEU CD2 HD21 sing N N 311 LEU CD2 HD22 sing N N 312 LEU CD2 HD23 sing N N 313 LEU OXT HXT sing N N 314 LYS N CA sing N N 315 LYS N H sing N N 316 LYS N H2 sing N N 317 LYS CA C sing N N 318 LYS CA CB sing N N 319 LYS CA HA sing N N 320 LYS C O doub N N 321 LYS C OXT sing N N 322 LYS CB CG sing N N 323 LYS CB HB2 sing N N 324 LYS CB HB3 sing N N 325 LYS CG CD sing N N 326 LYS CG HG2 sing N N 327 LYS CG HG3 sing N N 328 LYS CD CE sing N N 329 LYS CD HD2 sing N N 330 LYS CD HD3 sing N N 331 LYS CE NZ sing N N 332 LYS CE HE2 sing N N 333 LYS CE HE3 sing N N 334 LYS NZ HZ1 sing N N 335 LYS NZ HZ2 sing N N 336 LYS NZ HZ3 sing N N 337 LYS OXT HXT sing N N 338 MET N CA sing N N 339 MET N H sing N N 340 MET N H2 sing N N 341 MET CA C sing N N 342 MET CA CB sing N N 343 MET CA HA sing N N 344 MET C O doub N N 345 MET C OXT sing N N 346 MET CB CG sing N N 347 MET CB HB2 sing N N 348 MET CB HB3 sing N N 349 MET CG SD sing N N 350 MET CG HG2 sing N N 351 MET CG HG3 sing N N 352 MET SD CE sing N N 353 MET CE HE1 sing N N 354 MET CE HE2 sing N N 355 MET CE HE3 sing N N 356 MET OXT HXT sing N N 357 PHE N CA sing N N 358 PHE N H sing N N 359 PHE N H2 sing N N 360 PHE CA C sing N N 361 PHE CA CB sing N N 362 PHE CA HA sing N N 363 PHE C O doub N N 364 PHE C OXT sing N N 365 PHE CB CG sing N N 366 PHE CB HB2 sing N N 367 PHE CB HB3 sing N N 368 PHE CG CD1 doub Y N 369 PHE CG CD2 sing Y N 370 PHE CD1 CE1 sing Y N 371 PHE CD1 HD1 sing N N 372 PHE CD2 CE2 doub Y N 373 PHE CD2 HD2 sing N N 374 PHE CE1 CZ doub Y N 375 PHE CE1 HE1 sing N N 376 PHE CE2 CZ sing Y N 377 PHE CE2 HE2 sing N N 378 PHE CZ HZ sing N N 379 PHE OXT HXT sing N N 380 PRO N CA sing N N 381 PRO N CD sing N N 382 PRO N H sing N N 383 PRO CA C sing N N 384 PRO CA CB sing N N 385 PRO CA HA sing N N 386 PRO C O doub N N 387 PRO C OXT sing N N 388 PRO CB CG sing N N 389 PRO CB HB2 sing N N 390 PRO CB HB3 sing N N 391 PRO CG CD sing N N 392 PRO CG HG2 sing N N 393 PRO CG HG3 sing N N 394 PRO CD HD2 sing N N 395 PRO CD HD3 sing N N 396 PRO OXT HXT sing N N 397 SER N CA sing N N 398 SER N H sing N N 399 SER N H2 sing N N 400 SER CA C sing N N 401 SER CA CB sing N N 402 SER CA HA sing N N 403 SER C O doub N N 404 SER C OXT sing N N 405 SER CB OG sing N N 406 SER CB HB2 sing N N 407 SER CB HB3 sing N N 408 SER OG HG sing N N 409 SER OXT HXT sing N N 410 THR N CA sing N N 411 THR N H sing N N 412 THR N H2 sing N N 413 THR CA C sing N N 414 THR CA CB sing N N 415 THR CA HA sing N N 416 THR C O doub N N 417 THR C OXT sing N N 418 THR CB OG1 sing N N 419 THR CB CG2 sing N N 420 THR CB HB sing N N 421 THR OG1 HG1 sing N N 422 THR CG2 HG21 sing N N 423 THR CG2 HG22 sing N N 424 THR CG2 HG23 sing N N 425 THR OXT HXT sing N N 426 TRP N CA sing N N 427 TRP N H sing N N 428 TRP N H2 sing N N 429 TRP CA C sing N N 430 TRP CA CB sing N N 431 TRP CA HA sing N N 432 TRP C O doub N N 433 TRP C OXT sing N N 434 TRP CB CG sing N N 435 TRP CB HB2 sing N N 436 TRP CB HB3 sing N N 437 TRP CG CD1 doub Y N 438 TRP CG CD2 sing Y N 439 TRP CD1 NE1 sing Y N 440 TRP CD1 HD1 sing N N 441 TRP CD2 CE2 doub Y N 442 TRP CD2 CE3 sing Y N 443 TRP NE1 CE2 sing Y N 444 TRP NE1 HE1 sing N N 445 TRP CE2 CZ2 sing Y N 446 TRP CE3 CZ3 doub Y N 447 TRP CE3 HE3 sing N N 448 TRP CZ2 CH2 doub Y N 449 TRP CZ2 HZ2 sing N N 450 TRP CZ3 CH2 sing Y N 451 TRP CZ3 HZ3 sing N N 452 TRP CH2 HH2 sing N N 453 TRP OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM C8H18N2O4S HEPES 1 2 300 mM NaCl 'Sodium Chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 10419 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Hepatitis B virus genotype D subtype adw' _em_entity_assembly_naturalsource.strain 'isolate United Kingdom/adyw/1979' _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.cell ? # _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? _em_entity_assembly_recombinant.cell ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 33 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 679 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 24823 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.8.7 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION 'Automated B-factor Sharpening' RELION 2.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.11 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 10 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI067417 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5D7Y # _atom_sites.entry_id 6BVN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F H N O S # loop_