HEADER TRANSCRIPTION 20-DEC-17 6BYB TITLE CRYSTAL STRUCTURE OF L3MBTL1 MBT DOMAIN WITH MBK14970 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L(3)MBT-LIKE,L(3)MBT PROTEIN HOMOLOG,L3MBTL1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L3MBTL1, KIAA0681, L3MBT, L3MBTL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS L3MBTL1, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,E.DOBROVETSKY,B.NICHOLSON,C.COX,C.FISCHER,K.ARMACOST, AUTHOR 2 J.SANDERS,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 2 04-OCT-23 6BYB 1 REMARK REVDAT 1 24-JAN-18 6BYB 0 JRNL AUTH E.DOBROVETSKY,A.DONG,B.NICHOLSON,C.COX,C.FISCHER,K.ARMACOST, JRNL AUTH 2 J.SANDERS,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF L3MBTL1 MBT DOMAIN WITH MBK14970 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2745 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2378 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3752 ; 1.425 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5543 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;29.180 ;23.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;11.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3098 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6BYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 2RJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.2 M MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE, 0.1 M SODIUM HEPES PH7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.58300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.58300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 465 LYS A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 GLN A 336 REMARK 465 SER A 337 REMARK 465 HIS A 338 REMARK 465 SER A 339 REMARK 465 ARG A 521 REMARK 465 GLU A 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 235 CD CE NZ REMARK 470 GLU A 277 CD OE1 OE2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LYS A 302 CD CE NZ REMARK 470 SER A 335 OG REMARK 470 LYS A 408 CD CE NZ REMARK 470 ASN A 421 CG OD1 ND2 REMARK 470 LYS A 426 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 391 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 -125.21 53.34 REMARK 500 ASN A 452 -9.85 80.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EC7 A 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EC7 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 609 DBREF 6BYB A 200 522 UNP Q9Y468 LMBL1_HUMAN 200 522 SEQRES 1 A 323 GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SER TYR LEU SEQRES 2 A 323 GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SER LEU PHE SEQRES 3 A 323 GLN ASP SER GLN ALA VAL THR HIS ASN LYS ASN GLY PHE SEQRES 4 A 323 LYS LEU GLY MET LYS LEU GLU GLY ILE ASP PRO GLN HIS SEQRES 5 A 323 PRO SER MET TYR PHE ILE LEU THR VAL ALA GLU VAL CYS SEQRES 6 A 323 GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY TYR SER GLU SEQRES 7 A 323 CYS HIS ASP PHE TRP VAL ASN ALA ASN SER PRO ASP ILE SEQRES 8 A 323 HIS PRO ALA GLY TRP PHE GLU LYS THR GLY HIS LYS LEU SEQRES 9 A 323 GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU PHE SER TRP SEQRES 10 A 323 SER GLN TYR LEU ARG SER THR ARG ALA GLN ALA ALA PRO SEQRES 11 A 323 LYS HIS LEU PHE VAL SER GLN SER HIS SER PRO PRO PRO SEQRES 12 A 323 LEU GLY PHE GLN VAL GLY MET LYS LEU GLU ALA VAL ASP SEQRES 13 A 323 ARG MET ASN PRO SER LEU VAL CYS VAL ALA SER VAL THR SEQRES 14 A 323 ASP VAL VAL ASP SER ARG PHE LEU VAL HIS PHE ASP ASN SEQRES 15 A 323 TRP ASP ASP THR TYR ASP TYR TRP CYS ASP PRO SER SER SEQRES 16 A 323 PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN LYS GLN GLY SEQRES 17 A 323 LYS PRO LEU THR PRO PRO GLN ASP TYR PRO ASP PRO ASP SEQRES 18 A 323 ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU THR GLY ALA SEQRES 19 A 323 SER ALA VAL PRO THR TRP ALA PHE LYS VAL ARG PRO PRO SEQRES 20 A 323 HIS SER PHE LEU VAL ASN MET LYS LEU GLU ALA VAL ASP SEQRES 21 A 323 ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SER VAL GLU SEQRES 22 A 323 ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS PHE ASP GLY SEQRES 23 A 323 TRP SER HIS GLY TYR ASP PHE TRP ILE ASP ALA ASP HIS SEQRES 24 A 323 PRO ASP ILE HIS PRO ALA GLY TRP CYS SER LYS THR GLY SEQRES 25 A 323 HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG GLU HET EC7 A 601 15 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET UNX A 610 1 HET UNX A 611 1 HET UNX A 612 1 HET UNX A 613 1 HET UNX A 614 1 HET UNX A 615 1 HET UNX A 616 1 HET UNX A 617 1 HET UNX A 618 1 HET UNX A 619 1 HET UNX A 620 1 HET UNX A 621 1 HET UNX A 622 1 HETNAM EC7 (S)-N-(CYCLOPROPYLMETHYL)-N~2~-METHYL-N-[2-METHYL-2-(1- HETNAM 2 EC7 METHYLPIPERIDIN-4-YL)PROPYL]ALANINAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EC7 C18 H35 N3 O FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 UNX 13(X) FORMUL 24 HOH *377(H2 O) HELIX 1 AA1 SER A 207 LYS A 216 1 10 HELIX 2 AA2 PRO A 221 PHE A 225 5 5 HELIX 3 AA3 GLN A 226 VAL A 231 1 6 HELIX 4 AA4 SER A 276 ASP A 280 5 5 HELIX 5 AA5 GLY A 294 GLY A 300 1 7 HELIX 6 AA6 SER A 315 ARG A 324 1 10 HELIX 7 AA7 PRO A 329 PHE A 333 5 5 HELIX 8 AA8 ASP A 383 ASP A 387 5 5 HELIX 9 AA9 GLY A 401 GLY A 407 1 7 HELIX 10 AB1 ASP A 418 PHE A 422 5 5 HELIX 11 AB2 CYS A 423 GLY A 432 1 10 HELIX 12 AB3 PRO A 437 PHE A 441 5 5 HELIX 13 AB4 SER A 487 ASP A 491 5 5 HELIX 14 AB5 GLY A 505 GLY A 511 1 7 SHEET 1 AA1 5 PHE A 281 ASN A 284 0 SHEET 2 AA1 5 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 AA1 5 HIS A 251 CYS A 264 -1 N ALA A 261 O ARG A 269 SHEET 4 AA1 5 LYS A 243 ASP A 248 -1 N LEU A 244 O LEU A 258 SHEET 5 AA1 5 ILE A 290 HIS A 291 -1 O HIS A 291 N GLU A 245 SHEET 1 AA2 4 PHE A 281 ASN A 284 0 SHEET 2 AA2 4 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 AA2 4 HIS A 251 CYS A 264 -1 N ALA A 261 O ARG A 269 SHEET 4 AA2 4 LEU A 303 GLN A 304 1 O GLN A 304 N TYR A 255 SHEET 1 AA3 5 TYR A 388 CYS A 390 0 SHEET 2 AA3 5 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 AA3 5 VAL A 362 VAL A 371 -1 N SER A 366 O HIS A 378 SHEET 4 AA3 5 LYS A 350 VAL A 354 -1 N ALA A 353 O CYS A 363 SHEET 5 AA3 5 ILE A 397 HIS A 398 -1 O HIS A 398 N GLU A 352 SHEET 1 AA4 5 PHE A 492 ASP A 495 0 SHEET 2 AA4 5 ARG A 478 PHE A 483 -1 N ILE A 481 O PHE A 492 SHEET 3 AA4 5 ILE A 466 VAL A 474 -1 N GLU A 472 O LYS A 480 SHEET 4 AA4 5 LYS A 454 VAL A 458 -1 N LEU A 455 O ALA A 469 SHEET 5 AA4 5 ILE A 501 HIS A 502 -1 O HIS A 502 N GLU A 456 SITE 1 AC1 5 ASP A 355 ASN A 358 LEU A 361 PHE A 379 SITE 2 AC1 5 GLU A 472 SITE 1 AC2 6 GLU A 209 GLU A 213 PRO A 437 THR A 438 SITE 2 AC2 6 TRP A 439 HOH A 969 SITE 1 AC3 7 ASP A 459 ARG A 461 ARG A 467 TRP A 486 SITE 2 AC3 7 TYR A 490 HOH A 854 HOH A 891 SITE 1 AC4 6 SER A 366 HIS A 378 ASP A 380 ASN A 381 SITE 2 AC4 6 HOH A 732 HOH A 893 SITE 1 AC5 7 ALA A 230 THR A 232 PRO A 503 ALA A 504 SITE 2 AC5 7 GLY A 505 TRP A 506 LYS A 509 SITE 1 AC6 6 LEU A 224 PHE A 225 GLN A 226 GLN A 229 SITE 2 AC6 6 ALA A 496 HOH A 703 SITE 1 AC7 6 PRO A 288 ASP A 289 HIS A 291 VAL A 371 SITE 2 AC7 6 ARG A 374 TRP A 389 SITE 1 AC8 7 LYS A 243 THR A 259 HIS A 271 ASP A 273 SITE 2 AC8 7 GLY A 274 HOH A 773 HOH A 966 SITE 1 AC9 3 ARG A 460 PHE A 492 HOH A 853 CRYST1 85.880 93.166 58.444 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017110 0.00000