HEADER LIGASE 21-DEC-17 6BYQ TITLE CRYSTAL STRUCTURE OF TYROSINE-TRNA LIGASE FROM HELICOBACTER PYLORI G27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: TYRS, HPG27_731; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, STRUCTURAL GENOMICS, TYROSINE--TRNA LIGASE, HELICOBACTER KEYWDS 2 PYLORI, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6BYQ 1 REMARK REVDAT 1 21-MAR-18 6BYQ 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF TYROSINE-TRNA LIGASE FROM HELICOBACTER JRNL TITL 2 PYLORI G27 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2947 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 25445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0180 - 5.2986 0.98 1790 140 0.1822 0.2112 REMARK 3 2 5.2986 - 4.2071 0.99 1709 175 0.1502 0.1784 REMARK 3 3 4.2071 - 3.6758 0.99 1712 145 0.1694 0.1991 REMARK 3 4 3.6758 - 3.3399 0.99 1712 124 0.1836 0.1863 REMARK 3 5 3.3399 - 3.1006 0.99 1685 154 0.1778 0.2387 REMARK 3 6 3.1006 - 2.9178 0.99 1693 146 0.1903 0.2196 REMARK 3 7 2.9178 - 2.7717 0.98 1686 143 0.1784 0.1856 REMARK 3 8 2.7717 - 2.6511 0.98 1700 119 0.1742 0.2158 REMARK 3 9 2.6511 - 2.5491 0.98 1662 137 0.1888 0.2378 REMARK 3 10 2.5491 - 2.4611 0.98 1717 118 0.1869 0.2661 REMARK 3 11 2.4611 - 2.3842 0.98 1638 134 0.1898 0.2363 REMARK 3 12 2.3842 - 2.3160 0.98 1699 143 0.1986 0.2554 REMARK 3 13 2.3160 - 2.2551 0.98 1644 147 0.2303 0.2794 REMARK 3 14 2.2551 - 2.2001 0.84 1434 139 0.2279 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4920 -20.9248 11.0477 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.2698 REMARK 3 T33: 0.2624 T12: 0.0206 REMARK 3 T13: 0.0381 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.4865 L22: 5.2665 REMARK 3 L33: 3.4630 L12: -0.0388 REMARK 3 L13: -0.7265 L23: 0.2439 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.3261 S13: -0.0116 REMARK 3 S21: 0.5191 S22: 0.1091 S23: 0.4554 REMARK 3 S31: -0.1421 S32: -0.1727 S33: -0.0243 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5524 -28.4394 13.9034 REMARK 3 T TENSOR REMARK 3 T11: 0.3927 T22: 0.5186 REMARK 3 T33: 0.5045 T12: 0.0021 REMARK 3 T13: -0.1008 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.7172 L22: 4.0319 REMARK 3 L33: 3.5160 L12: -0.5696 REMARK 3 L13: -1.3563 L23: 0.6100 REMARK 3 S TENSOR REMARK 3 S11: -0.2746 S12: -0.2625 S13: -0.5553 REMARK 3 S21: 0.4167 S22: 0.2055 S23: -0.9842 REMARK 3 S31: -0.1255 S32: 1.0198 S33: 0.0705 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0458 -21.2233 7.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.3107 REMARK 3 T33: 0.4003 T12: 0.0236 REMARK 3 T13: -0.0731 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 4.8018 L22: 2.1245 REMARK 3 L33: 1.9496 L12: 0.1381 REMARK 3 L13: -2.0421 L23: -0.0223 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.3697 S13: 0.3712 REMARK 3 S21: 0.2247 S22: 0.0337 S23: -0.3753 REMARK 3 S31: -0.0541 S32: 0.1963 S33: -0.1384 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1209 -16.1611 28.4456 REMARK 3 T TENSOR REMARK 3 T11: 1.0668 T22: 0.8424 REMARK 3 T33: 0.3185 T12: 0.2357 REMARK 3 T13: 0.0937 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.5434 L22: 2.8068 REMARK 3 L33: 3.1106 L12: -0.7291 REMARK 3 L13: -0.3080 L23: -0.8092 REMARK 3 S TENSOR REMARK 3 S11: -0.4079 S12: -1.2039 S13: 0.0526 REMARK 3 S21: 1.6443 S22: 0.5212 S23: 0.2848 REMARK 3 S31: -0.1280 S32: -0.2393 S33: -0.0588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.011 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.170 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.74 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA, SIMBAD REMARK 200 STARTING MODEL: 1H3F AS PER MORDA, TARGET IDENTIFIED WITH SIMBAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS MORPHEUS SCREEN REMARK 280 D11: 10% W/V PEG 4000, 20% V/V GLYCEROL, 0.02 M EACH 1,6- REMARK 280 HEXANEDIOL, 1-BUTANOL, (RS)-1,2- PROPANEDIOL, M 2-PROPANOL, 1,4- REMARK 280 BUTANEDIOL, 1,3-PROPANEDIOL: 100MM BICINE/TRIS BASE PH 8.5: REMARK 280 HEPYC.00630.A.B1/HEPYC.01032.A.B1.PS38283 AT 18.5MG/ML: CRYO: REMARK 280 DIRECT: TRAY 292683 D11: PUCK XOE2-4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 ASP A 86 REMARK 465 PRO A 87 REMARK 465 THR A 88 REMARK 465 GLY A 89 REMARK 465 LYS A 90 REMARK 465 ASN A 91 REMARK 465 GLU A 92 REMARK 465 GLN A 318 REMARK 465 PHE A 319 REMARK 465 SER A 320 REMARK 465 LYS A 321 REMARK 465 VAL A 322 REMARK 465 PHE A 323 REMARK 465 SER A 324 REMARK 465 ALA A 325 REMARK 465 ASN A 326 REMARK 465 LEU A 327 REMARK 465 LEU A 328 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 ILE A 331 REMARK 465 LEU A 332 REMARK 465 SER A 333 REMARK 465 GLU A 334 REMARK 465 SER A 335 REMARK 465 ASP A 336 REMARK 465 PHE A 337 REMARK 465 ASP A 338 REMARK 465 GLU A 339 REMARK 465 GLY A 340 REMARK 465 VAL A 341 REMARK 465 GLY A 342 REMARK 465 ILE A 343 REMARK 465 LEU A 344 REMARK 465 ASP A 345 REMARK 465 VAL A 346 REMARK 465 LEU A 347 REMARK 465 LYS A 348 REMARK 465 GLN A 349 REMARK 465 ILE A 350 REMARK 465 GLY A 351 REMARK 465 PHE A 352 REMARK 465 CYS A 353 REMARK 465 PRO A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 SER A 357 REMARK 465 GLN A 358 REMARK 465 ALA A 359 REMARK 465 ARG A 360 REMARK 465 ARG A 361 REMARK 465 ASP A 362 REMARK 465 ILE A 363 REMARK 465 GLN A 364 REMARK 465 GLY A 365 REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 VAL A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 465 ASN A 371 REMARK 465 GLN A 372 REMARK 465 GLU A 373 REMARK 465 VAL A 374 REMARK 465 ILE A 375 REMARK 465 LYS A 376 REMARK 465 ASP A 377 REMARK 465 GLU A 378 REMARK 465 SER A 379 REMARK 465 TYR A 380 REMARK 465 ARG A 381 REMARK 465 PHE A 382 REMARK 465 VAL A 383 REMARK 465 LYS A 384 REMARK 465 GLY A 385 REMARK 465 ASN A 386 REMARK 465 TYR A 387 REMARK 465 VAL A 388 REMARK 465 ILE A 389 REMARK 465 GLN A 390 REMARK 465 LEU A 391 REMARK 465 GLY A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 ARG A 395 REMARK 465 PHE A 396 REMARK 465 MET A 397 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 ILE A 401 REMARK 465 ASN A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 THR A 93 OG1 CG2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 213 CG OD1 ND2 REMARK 470 VAL A 230 CG1 CG2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 SER A 236 OG REMARK 470 LEU A 237 CG CD1 CD2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ASP A 260 CG OD1 OD2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 ILE A 284 CG1 CG2 CD1 REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 THR A 288 OG1 CG2 REMARK 470 LEU A 289 CG CD1 CD2 REMARK 470 HIS A 290 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 PHE A 313 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 94 66.15 -119.74 REMARK 500 TYR A 307 -109.05 -131.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-HEPC.01032.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: HEPC.01032.A RELATED DB: TARGETTRACK DBREF 6BYQ A 1 402 UNP B5Z7D7 B5Z7D7_HELPG 1 402 SEQADV 6BYQ MET A -7 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ ALA A -6 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A -5 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A -4 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A -3 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A -2 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A -1 UNP B5Z7D7 EXPRESSION TAG SEQADV 6BYQ HIS A 0 UNP B5Z7D7 EXPRESSION TAG SEQRES 1 A 410 MET ALA HIS HIS HIS HIS HIS HIS MET GLU GLN LYS ILE SEQRES 2 A 410 SER VAL ALA LEU LYS GLU ILE LYS ARG GLY ALA ASN GLU SEQRES 3 A 410 ILE ILE GLY LEU GLU TYR ILE GLU LYS LEU VAL ARG LYS SEQRES 4 A 410 TYR TYR GLU THR ASN GLU ARG PHE ILE VAL LYS ALA GLY SEQRES 5 A 410 PHE ASP PRO THR ALA PRO ASP LEU HIS LEU GLY HIS THR SEQRES 6 A 410 VAL LEU ILE GLN LYS LEU ALA LEU LEU GLN GLN TYR GLY SEQRES 7 A 410 ALA ARG VAL LYS PHE LEU ILE GLY ASP PHE THR ALA MET SEQRES 8 A 410 ILE GLY ASP PRO THR GLY LYS ASN GLU THR ARG LYS PRO SEQRES 9 A 410 LEU ASN ARG GLU GLN VAL LEU GLU ASN ALA LYS THR TYR SEQRES 10 A 410 GLU GLU GLN ILE TYR LYS ILE LEU ASP GLN LYS HIS THR SEQRES 11 A 410 GLU VAL CYS PHE ASN SER THR TRP LEU ASP ALA LEU GLY SEQRES 12 A 410 ALA LYS GLY MET ILE GLU LEU CYS ALA LYS PHE SER VAL SEQRES 13 A 410 ALA ARG MET LEU GLU ARG ASP ASP PHE ALA LYS ARG HIS SEQRES 14 A 410 LYS GLU ASN ARG PRO ILE SER ILE VAL GLU PHE LEU TYR SEQRES 15 A 410 PRO LEU LEU GLN GLY TYR ASP SER VAL ALA MET GLY ALA SEQRES 16 A 410 ASP ILE GLU LEU GLY GLY ASN ASP GLN LYS PHE ASN LEU SEQRES 17 A 410 LEU VAL GLY ARG PHE LEU GLN ARG ALA TYR GLY LEU ASN SEQRES 18 A 410 LYS GLU GLN SER ILE ILE THR MET PRO LEU LEU GLU GLY SEQRES 19 A 410 LEU ASP GLY VAL GLN LYS MET SER LYS SER LEU GLY ASN SEQRES 20 A 410 TYR VAL GLY ILE THR GLU GLU PRO ASN ALA MET PHE GLY SEQRES 21 A 410 LYS ILE MET SER VAL SER ASP ASP LEU MET TRP ARG TYR SEQRES 22 A 410 TYR THR LEU LEU SER ALA LYS THR LEU GLU GLU ILE GLU SEQRES 23 A 410 ASP LEU LYS HIS GLY ILE LEU ASN GLN THR LEU HIS PRO SEQRES 24 A 410 LYS ALA VAL LYS GLU ASP LEU ALA GLY GLU ILE VAL ALA SEQRES 25 A 410 ARG TYR TYR ASP ASN ASP GLN ALA PHE LYS ALA LYS GLU SEQRES 26 A 410 GLN PHE SER LYS VAL PHE SER ALA ASN LEU LEU PRO GLU SEQRES 27 A 410 ILE LEU SER GLU SER ASP PHE ASP GLU GLY VAL GLY ILE SEQRES 28 A 410 LEU ASP VAL LEU LYS GLN ILE GLY PHE CYS PRO SER THR SEQRES 29 A 410 SER GLN ALA ARG ARG ASP ILE GLN GLY GLY GLY VAL LYS SEQRES 30 A 410 ILE ASN GLN GLU VAL ILE LYS ASP GLU SER TYR ARG PHE SEQRES 31 A 410 VAL LYS GLY ASN TYR VAL ILE GLN LEU GLY LYS LYS ARG SEQRES 32 A 410 PHE MET LYS LEU ASN ILE ASN HET IPA A 501 4 HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 IPA C3 H8 O FORMUL 3 HOH *122(H2 O) HELIX 1 AA1 HIS A -2 ARG A 14 1 17 HELIX 2 AA2 GLY A 21 ASN A 36 1 16 HELIX 3 AA3 HIS A 53 TYR A 69 1 17 HELIX 4 AA4 GLY A 78 MET A 83 1 6 HELIX 5 AA5 ASN A 98 GLU A 111 1 14 HELIX 6 AA6 GLN A 112 ILE A 116 5 5 HELIX 7 AA7 ASP A 118 LYS A 120 5 3 HELIX 8 AA8 ASN A 127 ASP A 132 1 6 HELIX 9 AA9 LEU A 134 ALA A 144 1 11 HELIX 10 AB1 SER A 147 LEU A 152 1 6 HELIX 11 AB2 ARG A 154 GLU A 163 1 10 HELIX 12 AB3 ILE A 169 GLY A 186 1 18 HELIX 13 AB4 GLN A 196 TYR A 210 1 15 HELIX 14 AB5 GLU A 246 SER A 256 1 11 HELIX 15 AB6 SER A 258 SER A 270 1 13 HELIX 16 AB7 THR A 273 ASN A 286 1 14 HELIX 17 AB8 HIS A 290 TYR A 307 1 18 HELIX 18 AB9 ASP A 308 GLU A 317 1 10 SHEET 1 AA1 6 GLU A 18 ILE A 20 0 SHEET 2 AA1 6 SER A 217 MET A 221 -1 O ILE A 218 N ILE A 20 SHEET 3 AA1 6 ILE A 189 GLY A 193 1 N GLY A 192 O MET A 221 SHEET 4 AA1 6 PHE A 39 PHE A 45 1 N LYS A 42 O ILE A 189 SHEET 5 AA1 6 ALA A 71 ILE A 77 1 O ARG A 72 N PHE A 39 SHEET 6 AA1 6 THR A 122 PHE A 126 1 O CYS A 125 N ILE A 77 SITE 1 AC1 5 LEU A 28 LYS A 31 ARG A 38 ASP A 188 SITE 2 AC1 5 LYS A 214 CRYST1 121.400 43.360 113.700 90.00 121.21 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008237 0.000000 0.004990 0.00000 SCALE2 0.000000 0.023063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010283 0.00000