data_6BZM # _entry.id 6BZM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BZM pdb_00006bzm 10.2210/pdb6bzm/pdb WWPDB D_1000231824 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-04-04 2 'Structure model' 1 1 2018-04-25 3 'Structure model' 1 2 2019-11-06 4 'Structure model' 1 3 2019-11-20 5 'Structure model' 1 4 2021-06-30 6 'Structure model' 1 5 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' diffrn_detector 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.source' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_audit_support.funding_organization' 4 5 'Structure model' '_diffrn_detector.detector' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6BZM _pdbx_database_status.recvd_initial_deposition_date 2017-12-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hughes, M.P.' 1 ? 'Rodriguez, J.A.' 2 ? 'Sawaya, M.R.' 3 ? 'Cascio, D.' 4 ? 'Chong, L.' 5 ? 'Gonen, T.' 6 ? 'Eisenberg, D.S.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 359 _citation.language ? _citation.page_first 698 _citation.page_last 701 _citation.title 'Atomic structures of low-complexity protein segments reveal kinked beta sheets that assemble networks.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aan6398 _citation.pdbx_database_id_PubMed 29439243 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hughes, M.P.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Boyer, D.R.' 3 ? primary 'Goldschmidt, L.' 4 ? primary 'Rodriguez, J.A.' 5 ? primary 'Cascio, D.' 6 ? primary 'Chong, L.' 7 ? primary 'Gonen, T.' 8 ? primary 'Eisenberg, D.S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Nuclear pore complex protein Nup98-Nup96' 785.803 2 ? ? 'UNP residues 116-123' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GFGNFGTS _entity_poly.pdbx_seq_one_letter_code_can GFGNFGTS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 GLY n 1 4 ASN n 1 5 PHE n 1 6 GLY n 1 7 THR n 1 8 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 SER 8 8 8 SER SER A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 SER 8 8 8 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 1 HOH HOH A . D 2 HOH 1 101 2 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1 ? refinement ? ? 'Gerard Bricogne' buster-develop@GlobalPhasing.com ? ? ? ? ? http://www.globalphasing.com/buster/ ? BUSTER ? ? program 2.10.3 2 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 3 # _cell.angle_alpha 93.140 _cell.angle_alpha_esd ? _cell.angle_beta 92.730 _cell.angle_beta_esd ? _cell.angle_gamma 97.150 _cell.angle_gamma_esd ? _cell.entry_id 6BZM _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.790 _cell.length_a_esd ? _cell.length_b 18.240 _cell.length_b_esd ? _cell.length_c 26.440 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BZM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.45 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 15.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M CHES, pH 9.5, 10% ethanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS F416 CMOS CAMERA' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-03-23 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 3.450 _reflns.entry_id 6BZM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.900 _reflns.d_resolution_low 26.360 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5800 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.461 _reflns.pdbx_Rmerge_I_obs 0.289 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.510 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.739 _reflns.pdbx_scaling_rejects 21 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.313 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 31674 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.976 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 0.900 0.920 ? 1.120 ? 691 517 ? 247 47.800 ? ? ? ? 0.588 ? ? ? ? ? ? ? ? 2.798 ? ? ? ? 0.717 ? ? 1 1 0.546 ? 0.920 0.950 ? 1.300 ? 1056 518 ? 382 73.700 ? ? ? ? 0.417 ? ? ? ? ? ? ? ? 2.764 ? ? ? ? 0.507 ? ? 2 1 0.851 ? 0.950 0.980 ? 1.300 ? 1311 440 ? 368 83.600 ? ? ? ? 0.591 ? ? ? ? ? ? ? ? 3.562 ? ? ? ? 0.685 ? ? 3 1 0.721 ? 0.980 1.010 ? 1.390 ? 1466 412 ? 374 90.800 ? ? ? ? 0.653 ? ? ? ? ? ? ? ? 3.920 ? ? ? ? 0.751 ? ? 4 1 0.595 ? 1.010 1.040 ? 2.010 ? 2020 423 ? 393 92.900 ? ? ? ? 0.549 ? ? ? ? ? ? ? ? 5.140 ? ? ? ? 0.605 ? ? 5 1 0.782 ? 1.040 1.080 ? 2.580 ? 2197 422 ? 399 94.500 ? ? ? ? 0.473 ? ? ? ? ? ? ? ? 5.506 ? ? ? ? 0.518 ? ? 6 1 0.886 ? 1.080 1.120 ? 2.790 ? 2296 408 ? 385 94.400 ? ? ? ? 0.471 ? ? ? ? ? ? ? ? 5.964 ? ? ? ? 0.511 ? ? 7 1 0.835 ? 1.120 1.160 ? 3.150 ? 2716 410 ? 390 95.100 ? ? ? ? 0.471 ? ? ? ? ? ? ? ? 6.964 ? ? ? ? 0.506 ? ? 8 1 0.862 ? 1.160 1.210 ? 3.600 ? 2551 401 ? 378 94.300 ? ? ? ? 0.412 ? ? ? ? ? ? ? ? 6.749 ? ? ? ? 0.447 ? ? 9 1 0.889 ? 1.210 1.270 ? 3.620 ? 1730 321 ? 297 92.500 ? ? ? ? 0.405 ? ? ? ? ? ? ? ? 5.825 ? ? ? ? 0.441 ? ? 10 1 0.866 ? 1.270 1.340 ? 3.820 ? 1841 322 ? 308 95.700 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 5.977 ? ? ? ? 0.417 ? ? 11 1 0.953 ? 1.340 1.420 ? 3.860 ? 1942 316 ? 302 95.600 ? ? ? ? 0.425 ? ? ? ? ? ? ? ? 6.430 ? ? ? ? 0.459 ? ? 12 1 0.828 ? 1.420 1.520 ? 5.030 ? 2174 332 ? 318 95.800 ? ? ? ? 0.320 ? ? ? ? ? ? ? ? 6.836 ? ? ? ? 0.345 ? ? 13 1 0.912 ? 1.520 1.640 ? 5.710 ? 1882 295 ? 280 94.900 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 6.721 ? ? ? ? 0.281 ? ? 14 1 0.963 ? 1.640 1.800 ? 5.230 ? 1098 227 ? 213 93.800 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 5.155 ? ? ? ? 0.317 ? ? 15 1 0.881 ? 1.800 2.010 ? 6.170 ? 1261 233 ? 215 92.300 ? ? ? ? 0.249 ? ? ? ? ? ? ? ? 5.865 ? ? ? ? 0.272 ? ? 16 1 0.946 ? 2.010 2.320 ? 7.360 ? 1484 226 ? 211 93.400 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 7.033 ? ? ? ? 0.249 ? ? 17 1 0.974 ? 2.320 2.850 ? 6.840 ? 779 155 ? 142 91.600 ? ? ? ? 0.211 ? ? ? ? ? ? ? ? 5.486 ? ? ? ? 0.231 ? ? 18 1 0.944 ? 2.850 4.030 ? 7.450 ? 756 142 ? 135 95.100 ? ? ? ? 0.216 ? ? ? ? ? ? ? ? 5.600 ? ? ? ? 0.235 ? ? 19 1 0.966 ? 4.030 26.360 ? 8.130 ? 423 72 ? 63 87.500 ? ? ? ? 0.255 ? ? ? ? ? ? ? ? 6.714 ? ? ? ? 0.270 ? ? 20 1 0.972 ? # _refine.aniso_B[1][1] 1.2892 _refine.aniso_B[1][2] -0.6176 _refine.aniso_B[1][3] -0.3092 _refine.aniso_B[2][2] 0.6422 _refine.aniso_B[2][3] -0.3355 _refine.aniso_B[3][3] -1.9314 _refine.B_iso_max 59.410 _refine.B_iso_mean 8.0200 _refine.B_iso_min 3.000 _refine.correlation_coeff_Fo_to_Fc 0.9110 _refine.correlation_coeff_Fo_to_Fc_free 0.8950 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6BZM _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.9000 _refine.ls_d_res_low 26.3600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5799 _refine.ls_number_reflns_R_free 580 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.9000 _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2300 _refine.ls_R_factor_R_free 0.2640 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2260 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.0350 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.0330 _refine.pdbx_overall_SU_R_Blow_DPI 0.0300 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.0320 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6BZM _refine_analyze.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.190 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 0.9000 _refine_hist.d_res_low 26.3600 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 115 _refine_hist.pdbx_number_residues_total 16 _refine_hist.pdbx_B_iso_mean_solvent 14.39 _refine_hist.pdbx_number_atoms_protein 112 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 32 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 4 ? t_trig_c_planes 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 34 ? t_gen_planes 5.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 202 ? t_it 20.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_nbd ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_improper_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_pseud_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 12 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_sum_occupancies ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_distance ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 237 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 0.014 ? 202 ? t_bond_d 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 1.160 ? 346 ? t_angle_deg 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 3.450 ? ? ? t_omega_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 13.010 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 0.9000 _refine_ls_shell.d_res_low 1.0100 _refine_ls_shell.number_reflns_all 1365 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_R_work 1229 _refine_ls_shell.percent_reflns_obs 72.2600 _refine_ls_shell.percent_reflns_R_free 9.9600 _refine_ls_shell.R_factor_all 0.2228 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2473 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2200 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6BZM _struct.title 'GFGNFGTS from low-complexity/FG repeat domain of Nup98, residues 116-123' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BZM _struct_keywords.text 'Amyloid, LARKS, Reversible-amyloid, low-complexity, FG repeat, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUP98_HUMAN _struct_ref.pdbx_db_accession P52948 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GFGNFGTS _struct_ref.pdbx_align_begin 116 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6BZM A 1 ? 8 ? P52948 116 ? 123 ? 1 8 2 1 6BZM B 1 ? 8 ? P52948 116 ? 123 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 A,B,C,D 1 5 A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.7900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -4.7900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.5800000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -9.5800000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'ELECTRON CRYSTALLOGRAPHY' 1 ? refined 1.4694 9.4609 17.6099 -0.0233 -0.0093 0.0014 0.0042 0.0072 0.0010 -0.0139 0.0118 0.0046 0.0483 0.0103 0.0273 0.0006 0.0006 -0.0012 0.0051 -0.0047 0.0006 -0.0022 -0.0003 -0.0011 'ELECTRON CRYSTALLOGRAPHY' 2 ? refined -0.2721 10.0436 29.4641 -0.0338 -0.0135 -0.0033 0.0040 0.0023 0.0000 -0.0033 0.0047 -0.0014 0.0251 -0.0290 0.0126 0.0004 -0.0006 0.0003 -0.0091 -0.0028 -0.0004 0.0040 -0.0014 0.0032 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'ELECTRON CRYSTALLOGRAPHY' 1 1 A 1 A 8 '{ A|* }' ? ? ? ? ? 'ELECTRON CRYSTALLOGRAPHY' 2 2 B 1 B 8 '{ B|* }' ? ? ? ? ? # _em_3d_fitting.entry_id 6BZM _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 8.0 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum likelihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6BZM _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ;Density map was obtained using measured diffraction intensities and the phases acquired from a crystallographic direct methods program, SHELXD. ; _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 0.90 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 9.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'A crystal containing protofilaments of an 8-residue segment of Nup98' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6BZM _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 15.6 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6BZM _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 100 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6BZM _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6BZM _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLY N N N N 18 GLY CA C N N 19 GLY C C N N 20 GLY O O N N 21 GLY OXT O N N 22 GLY H H N N 23 GLY H2 H N N 24 GLY HA2 H N N 25 GLY HA3 H N N 26 GLY HXT H N N 27 HOH O O N N 28 HOH H1 H N N 29 HOH H2 H N N 30 PHE N N N N 31 PHE CA C N S 32 PHE C C N N 33 PHE O O N N 34 PHE CB C N N 35 PHE CG C Y N 36 PHE CD1 C Y N 37 PHE CD2 C Y N 38 PHE CE1 C Y N 39 PHE CE2 C Y N 40 PHE CZ C Y N 41 PHE OXT O N N 42 PHE H H N N 43 PHE H2 H N N 44 PHE HA H N N 45 PHE HB2 H N N 46 PHE HB3 H N N 47 PHE HD1 H N N 48 PHE HD2 H N N 49 PHE HE1 H N N 50 PHE HE2 H N N 51 PHE HZ H N N 52 PHE HXT H N N 53 SER N N N N 54 SER CA C N S 55 SER C C N N 56 SER O O N N 57 SER CB C N N 58 SER OG O N N 59 SER OXT O N N 60 SER H H N N 61 SER H2 H N N 62 SER HA H N N 63 SER HB2 H N N 64 SER HB3 H N N 65 SER HG H N N 66 SER HXT H N N 67 THR N N N N 68 THR CA C N S 69 THR C C N N 70 THR O O N N 71 THR CB C N R 72 THR OG1 O N N 73 THR CG2 C N N 74 THR OXT O N N 75 THR H H N N 76 THR H2 H N N 77 THR HA H N N 78 THR HB H N N 79 THR HG1 H N N 80 THR HG21 H N N 81 THR HG22 H N N 82 THR HG23 H N N 83 THR HXT H N N 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLY N CA sing N N 17 GLY N H sing N N 18 GLY N H2 sing N N 19 GLY CA C sing N N 20 GLY CA HA2 sing N N 21 GLY CA HA3 sing N N 22 GLY C O doub N N 23 GLY C OXT sing N N 24 GLY OXT HXT sing N N 25 HOH O H1 sing N N 26 HOH O H2 sing N N 27 PHE N CA sing N N 28 PHE N H sing N N 29 PHE N H2 sing N N 30 PHE CA C sing N N 31 PHE CA CB sing N N 32 PHE CA HA sing N N 33 PHE C O doub N N 34 PHE C OXT sing N N 35 PHE CB CG sing N N 36 PHE CB HB2 sing N N 37 PHE CB HB3 sing N N 38 PHE CG CD1 doub Y N 39 PHE CG CD2 sing Y N 40 PHE CD1 CE1 sing Y N 41 PHE CD1 HD1 sing N N 42 PHE CD2 CE2 doub Y N 43 PHE CD2 HD2 sing N N 44 PHE CE1 CZ doub Y N 45 PHE CE1 HE1 sing N N 46 PHE CE2 CZ sing Y N 47 PHE CE2 HE2 sing N N 48 PHE CZ HZ sing N N 49 PHE OXT HXT sing N N 50 SER N CA sing N N 51 SER N H sing N N 52 SER N H2 sing N N 53 SER CA C sing N N 54 SER CA CB sing N N 55 SER CA HA sing N N 56 SER C O doub N N 57 SER C OXT sing N N 58 SER CB OG sing N N 59 SER CB HB2 sing N N 60 SER CB HB3 sing N N 61 SER OG HG sing N N 62 SER OXT HXT sing N N 63 THR N CA sing N N 64 THR N H sing N N 65 THR N H2 sing N N 66 THR CA C sing N N 67 THR CA CB sing N N 68 THR CA HA sing N N 69 THR C O doub N N 70 THR C OXT sing N N 71 THR CB OG1 sing N N 72 THR CB CG2 sing N N 73 THR CB HB sing N N 74 THR OG1 HG1 sing N N 75 THR CG2 HG21 sing N N 76 THR CG2 HG22 sing N N 77 THR CG2 HG23 sing N N 78 THR OXT HXT sing N N 79 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 93.14 _em_3d_crystal_entity.angle_beta 92.73 _em_3d_crystal_entity.angle_gamma 97.15 _em_3d_crystal_entity.length_a 4.79 _em_3d_crystal_entity.length_b 18.24 _em_3d_crystal_entity.length_c 26.44 _em_3d_crystal_entity.space_group_name P1 _em_3d_crystal_entity.space_group_num 1 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.1 M C8H17NO3S CHES 1 2 10 'percent (v/v)' C2H6O ethanol # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere air _em_crystal_formation.details ;The peptide was solubilized by adding nano-pure H2O with 20% DMSO to achieve a concentration of 12 mg/mL. The peptide solution was immediately used for crystallization. Crystals grew at room temperature by hanging drop vapor diffusion. ; _em_crystal_formation.instrument 'hanging drop vapor diffusion' _em_crystal_formation.lipid_mixture none _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 298 _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 730 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # loop_ _em_diffraction_shell.id _em_diffraction_shell.em_diffraction_stats_id _em_diffraction_shell.fourier_space_coverage _em_diffraction_shell.high_resolution _em_diffraction_shell.low_resolution _em_diffraction_shell.multiplicity _em_diffraction_shell.num_structure_factors _em_diffraction_shell.phase_residual 1 1 93.8 1.4289 18.0678 6.2 1551 41.61 2 1 94.3 1.1342 1.4289 6.4 1525 48.66 3 1 93.9 0.9909 1.1342 5.5 1544 36.54 4 1 70.3 0.9003 0.9000 3.2 1179 43.94 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ;Phase statistics are not applicable. No imaging was used. The phases wwere obtained by a crystallographic direct methods program, SHELXD. ; _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 88.0 _em_diffraction_stats.high_resolution 0.90 _em_diffraction_stats.num_intensities_measured 31674 _em_diffraction_stats.num_structure_factors 5800 _em_diffraction_stats.overall_phase_error 42.6 _em_diffraction_stats.overall_phase_residual 42.6 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.289 _em_diffraction_stats.r_sym 0.289 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 2 _em_image_recording.details 'The detector was operated in rolling shutter mode with 2x2 pixel binning.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F415 (4k x 4k)' _em_image_recording.num_diffraction_images 398 _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? EM-Menu ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot ? ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? SHELXD 2013/2 1 ? ? 13 'MODEL REFINEMENT' ? BUSTER 2.10.3 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 12 _em_specimen.details crystal _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/Office of the Director' 'United States' AG-04812 2 'National Science Foundation (NSF, United States)' 'United States' MCB-0958111 3 # _atom_sites.entry_id 6BZM _atom_sites.fract_transf_matrix[1][1] 0.208768 _atom_sites.fract_transf_matrix[1][2] 0.026188 _atom_sites.fract_transf_matrix[1][3] 0.011581 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.055254 _atom_sites.fract_transf_matrix[2][3] 0.003391 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037936 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_