HEADER TRANSFERASE 29-DEC-17 6C0C OBSLTE 28-FEB-18 6C0C 6CD7 TITLE CRYSTAL STRUCTURE OF APH(2")-IVA IN COMPLEX WITH PLAZOMICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_COMMON: ENTEROCOCCUS FLAVESCENS; SOURCE 4 ORGANISM_TAXID: 37734; SOURCE 5 GENE: APH(2'')-ID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, EUKARYOTIC PROTEIN KINASE-LIKE FOLD, AMINOGLYCOSIDE KEYWDS 3 PHOSPHOTRANSFERASE, KINASE, TRANSFERASE, AMINOGLYCOSIDES, KEYWDS 4 PLAZOMICIN, ANTIBIOTIC, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,A.DONG,R.DI LEO,A.SAVCHENKO,K.J.SATCHELL, AUTHOR 2 J.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 28-FEB-18 6C0C 1 OBSLTE REVDAT 2 14-FEB-18 6C0C 1 REMARK REVDAT 1 31-JAN-18 6C0C 0 JRNL AUTH P.J.STOGIOS JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2733 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 96097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5982 - 4.6733 1.00 3152 178 0.1613 0.1766 REMARK 3 2 4.6733 - 3.7176 1.00 3145 157 0.1335 0.1520 REMARK 3 3 3.7176 - 3.2501 1.00 3107 163 0.1420 0.1994 REMARK 3 4 3.2501 - 2.9540 1.00 3135 159 0.1530 0.1752 REMARK 3 5 2.9540 - 2.7429 1.00 3070 172 0.1683 0.2145 REMARK 3 6 2.7429 - 2.5816 1.00 3108 154 0.1706 0.2204 REMARK 3 7 2.5816 - 2.4525 1.00 3121 174 0.1650 0.1964 REMARK 3 8 2.4525 - 2.3460 1.00 3082 173 0.1698 0.1953 REMARK 3 9 2.3460 - 2.2558 1.00 3103 156 0.1736 0.2466 REMARK 3 10 2.2558 - 2.1780 1.00 3084 175 0.1787 0.2376 REMARK 3 11 2.1780 - 2.1100 1.00 3120 182 0.1784 0.2361 REMARK 3 12 2.1100 - 2.0498 1.00 3060 162 0.1838 0.2273 REMARK 3 13 2.0498 - 1.9959 1.00 3090 172 0.1861 0.2226 REMARK 3 14 1.9959 - 1.9472 1.00 3101 175 0.1871 0.2054 REMARK 3 15 1.9472 - 1.9030 1.00 3050 173 0.1990 0.2125 REMARK 3 16 1.9030 - 1.8625 1.00 3100 179 0.2069 0.2394 REMARK 3 17 1.8625 - 1.8253 1.00 3085 170 0.2054 0.2514 REMARK 3 18 1.8253 - 1.7909 1.00 3059 156 0.2056 0.2275 REMARK 3 19 1.7909 - 1.7589 1.00 3090 148 0.2126 0.2190 REMARK 3 20 1.7589 - 1.7291 1.00 3153 142 0.2110 0.2510 REMARK 3 21 1.7291 - 1.7012 1.00 3065 176 0.2128 0.2407 REMARK 3 22 1.7012 - 1.6751 1.00 3052 188 0.2140 0.2200 REMARK 3 23 1.6751 - 1.6504 1.00 3077 174 0.2269 0.2481 REMARK 3 24 1.6504 - 1.6272 1.00 3109 162 0.2374 0.2631 REMARK 3 25 1.6272 - 1.6052 1.00 3031 171 0.2447 0.2802 REMARK 3 26 1.6052 - 1.5844 0.99 3087 156 0.2486 0.2668 REMARK 3 27 1.5844 - 1.5646 0.99 3101 151 0.2716 0.2809 REMARK 3 28 1.5646 - 1.5458 0.98 3020 141 0.2978 0.2918 REMARK 3 29 1.5458 - 1.5278 0.89 2781 163 0.3008 0.3865 REMARK 3 30 1.5278 - 1.5106 0.61 1864 93 0.3356 0.3607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5223 REMARK 3 ANGLE : 1.026 7071 REMARK 3 CHIRALITY : 0.057 753 REMARK 3 PLANARITY : 0.006 911 REMARK 3 DIHEDRAL : 22.726 2047 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:42) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2912 -23.2592 19.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1713 REMARK 3 T33: 0.2493 T12: -0.0669 REMARK 3 T13: -0.0140 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 5.6187 L22: 5.1973 REMARK 3 L33: 6.5986 L12: 1.0678 REMARK 3 L13: 0.0118 L23: 0.6475 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.0389 S13: 0.0003 REMARK 3 S21: -0.0103 S22: 0.0377 S23: 0.7209 REMARK 3 S31: 0.3180 S32: -0.4839 S33: -0.0213 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 43:145) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8280 -20.6236 27.8755 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.0721 REMARK 3 T33: 0.1107 T12: 0.0030 REMARK 3 T13: 0.0248 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.2778 L22: 0.6215 REMARK 3 L33: 1.5262 L12: -0.1407 REMARK 3 L13: 0.6667 L23: -0.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.0522 S13: -0.0247 REMARK 3 S21: -0.0468 S22: -0.0335 S23: -0.0273 REMARK 3 S31: 0.0376 S32: 0.0505 S33: 0.0351 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 146:188) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7132 8.4146 36.4136 REMARK 3 T TENSOR REMARK 3 T11: 0.2670 T22: 0.1152 REMARK 3 T33: 0.2572 T12: -0.0722 REMARK 3 T13: 0.0135 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 5.3176 L22: 3.1920 REMARK 3 L33: 1.8531 L12: -3.5630 REMARK 3 L13: 0.6036 L23: -0.3464 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.0117 S13: 0.1679 REMARK 3 S21: 0.0823 S22: -0.0308 S23: -0.3329 REMARK 3 S31: 0.0022 S32: 0.0191 S33: -0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 189:264) REMARK 3 ORIGIN FOR THE GROUP (A): 61.0982 -17.1077 40.8575 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.0862 REMARK 3 T33: 0.0912 T12: 0.0224 REMARK 3 T13: -0.0016 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.4367 L22: 3.4343 REMARK 3 L33: 2.3953 L12: 1.0524 REMARK 3 L13: 0.3300 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: -0.2359 S13: 0.0056 REMARK 3 S21: 0.1611 S22: -0.1008 S23: -0.0901 REMARK 3 S31: -0.1354 S32: -0.0670 S33: 0.0840 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 265:298) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4207 1.1855 38.2062 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 0.2586 REMARK 3 T33: 0.3274 T12: -0.0820 REMARK 3 T13: 0.0474 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.4109 L22: 8.1767 REMARK 3 L33: 7.2576 L12: -1.9895 REMARK 3 L13: 2.7990 L23: -4.1469 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.0116 S13: -0.1096 REMARK 3 S21: 0.0782 S22: 0.3509 S23: 0.8356 REMARK 3 S31: 0.3863 S32: -0.6868 S33: -0.4271 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 0:98) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6841 11.1428 12.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1037 REMARK 3 T33: 0.0820 T12: -0.0035 REMARK 3 T13: -0.0142 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.3767 L22: 1.7505 REMARK 3 L33: 0.7431 L12: 0.0365 REMARK 3 L13: -0.1831 L23: 0.0191 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.0521 S13: 0.0374 REMARK 3 S21: 0.0040 S22: -0.0383 S23: 0.1561 REMARK 3 S31: 0.0427 S32: -0.0528 S33: 0.0205 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 99:144) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6863 11.5673 -2.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1392 REMARK 3 T33: 0.1014 T12: -0.0174 REMARK 3 T13: 0.0074 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.2757 L22: 3.7057 REMARK 3 L33: 4.0350 L12: 0.0312 REMARK 3 L13: -0.3023 L23: -2.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.1901 S13: 0.1138 REMARK 3 S21: -0.2374 S22: -0.0267 S23: -0.1268 REMARK 3 S31: 0.0088 S32: -0.0190 S33: 0.0721 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 145:188) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7048 -19.2214 -1.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.0997 REMARK 3 T33: 0.2024 T12: 0.0094 REMARK 3 T13: 0.0234 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 7.1360 L22: 4.7865 REMARK 3 L33: 3.9403 L12: 3.3178 REMARK 3 L13: 3.5498 L23: 2.4570 REMARK 3 S TENSOR REMARK 3 S11: 0.1240 S12: 0.0097 S13: -0.2124 REMARK 3 S21: 0.0354 S22: 0.1337 S23: -0.2220 REMARK 3 S31: -0.0988 S32: -0.0292 S33: -0.2318 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 189:256) REMARK 3 ORIGIN FOR THE GROUP (A): 67.5765 7.2726 -4.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.2124 REMARK 3 T33: 0.0997 T12: -0.0155 REMARK 3 T13: 0.0240 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.4218 L22: 3.0639 REMARK 3 L33: 1.6514 L12: -0.4900 REMARK 3 L13: -0.2299 L23: -0.8374 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.4388 S13: 0.0361 REMARK 3 S21: -0.4998 S22: -0.1161 S23: -0.1451 REMARK 3 S31: 0.1177 S32: -0.0539 S33: 0.0602 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 257:297) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9285 -10.1558 -6.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.4120 T22: 0.2650 REMARK 3 T33: 0.2288 T12: 0.0827 REMARK 3 T13: 0.0173 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 8.8370 L22: 5.2265 REMARK 3 L33: 2.7417 L12: 5.9610 REMARK 3 L13: -1.4398 L23: -2.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.5965 S13: 0.0655 REMARK 3 S21: -0.3942 S22: 0.2665 S23: 0.4031 REMARK 3 S31: -0.3112 S32: -0.4595 S33: -0.3056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 10 MM HEPES (PH 7.5), 25% REMARK 280 (W/V) PEG3350 AND 10 MM PLAZOMICIN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.90650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 -5.05 58.19 REMARK 500 ASP A 197 47.71 -145.16 REMARK 500 ASP A 217 77.56 62.01 REMARK 500 SER A 224 -151.43 -161.03 REMARK 500 ASP A 237 -72.11 -64.75 REMARK 500 GLU A 239 -147.87 -128.61 REMARK 500 SER A 297 -74.24 -123.62 REMARK 500 ASP B 197 47.61 -141.35 REMARK 500 ASP B 217 66.95 66.87 REMARK 500 SER B 224 -149.92 -161.66 REMARK 500 GLU B 239 -147.18 -123.46 REMARK 500 TYR B 284 38.84 -80.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1042 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1045 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1046 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1047 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1048 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1049 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1051 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1101 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1102 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1103 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1104 DISTANCE = 6.32 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DFB RELATED DB: PDB REMARK 900 RELATED ID: 4DBX RELATED DB: PDB REMARK 900 RELATED ID: 4DE4 RELATED DB: PDB REMARK 900 RELATED ID: 4DFU RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP91189 RELATED DB: TARGETTRACK DBREF 6C0C A 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 6C0C B 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 6C0C GLY A 0 UNP O68183 EXPRESSION TAG SEQADV 6C0C GLY B 0 UNP O68183 EXPRESSION TAG SEQRES 1 A 302 GLY MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA SEQRES 2 A 302 ILE GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE SEQRES 3 A 302 GLU ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU SEQRES 4 A 302 ILE ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER SEQRES 5 A 302 ARG GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU SEQRES 6 A 302 LYS ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU SEQRES 7 A 302 VAL VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SEQRES 8 A 302 SER PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU SEQRES 9 A 302 THR PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN SEQRES 10 A 302 ASN GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU SEQRES 11 A 302 LEU HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU SEQRES 12 A 302 VAL LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS SEQRES 13 A 302 LYS ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO SEQRES 14 A 302 GLN MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU SEQRES 15 A 302 GLU ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE SEQRES 16 A 302 HIS ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR SEQRES 17 A 302 GLU LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP SEQRES 18 A 302 ALA ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU SEQRES 19 A 302 MET GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER SEQRES 20 A 302 LYS ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR SEQRES 21 A 302 VAL LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER SEQRES 22 A 302 PHE GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET SEQRES 23 A 302 ASP TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER ILE SEQRES 24 A 302 LYS ILE LYS SEQRES 1 B 302 GLY MET ARG THR TYR THR PHE ASP GLN VAL GLU LYS ALA SEQRES 2 B 302 ILE GLU GLN LEU TYR PRO ASP PHE THR ILE ASN THR ILE SEQRES 3 B 302 GLU ILE SER GLY GLU GLY ASN ASP CYS ILE ALA TYR GLU SEQRES 4 B 302 ILE ASN ARG ASP PHE ILE PHE LYS PHE PRO LYS HIS SER SEQRES 5 B 302 ARG GLY SER THR ASN LEU PHE ASN GLU VAL ASN ILE LEU SEQRES 6 B 302 LYS ARG ILE HIS ASN LYS LEU PRO LEU PRO ILE PRO GLU SEQRES 7 B 302 VAL VAL PHE THR GLY MET PRO SER GLU THR TYR GLN MET SEQRES 8 B 302 SER PHE ALA GLY PHE THR LYS ILE LYS GLY VAL PRO LEU SEQRES 9 B 302 THR PRO LEU LEU LEU ASN ASN LEU PRO LYS GLN SER GLN SEQRES 10 B 302 ASN GLN ALA ALA LYS ASP LEU ALA ARG PHE LEU SER GLU SEQRES 11 B 302 LEU HIS SER ILE ASN ILE SER GLY PHE LYS SER ASN LEU SEQRES 12 B 302 VAL LEU ASP PHE ARG GLU LYS ILE ASN GLU ASP ASN LYS SEQRES 13 B 302 LYS ILE LYS LYS LEU LEU SER ARG GLU LEU LYS GLY PRO SEQRES 14 B 302 GLN MET LYS LYS VAL ASP ASP PHE TYR ARG ASP ILE LEU SEQRES 15 B 302 GLU ASN GLU ILE TYR PHE LYS TYR TYR PRO CYS LEU ILE SEQRES 16 B 302 HIS ASN ASP PHE SER SER ASP HIS ILE LEU PHE ASP THR SEQRES 17 B 302 GLU LYS ASN THR ILE CYS GLY ILE ILE ASP PHE GLY ASP SEQRES 18 B 302 ALA ALA ILE SER ASP PRO ASP ASN ASP PHE ILE SER LEU SEQRES 19 B 302 MET GLU ASP ASP GLU GLU TYR GLY MET GLU PHE VAL SER SEQRES 20 B 302 LYS ILE LEU ASN HIS TYR LYS HIS LYS ASP ILE PRO THR SEQRES 21 B 302 VAL LEU GLU LYS TYR ARG MET LYS GLU LYS TYR TRP SER SEQRES 22 B 302 PHE GLU LYS ILE ILE TYR GLY LYS GLU TYR GLY TYR MET SEQRES 23 B 302 ASP TRP TYR GLU GLU GLY LEU ASN GLU ILE ARG SER ILE SEQRES 24 B 302 LYS ILE LYS HET CL A 401 1 HET EDS B 401 41 HET CL B 402 1 HET CL B 403 1 HET CL B 404 1 HETNAM CL CHLORIDE ION HETNAM EDS (2S)-4-AMINO-N-[(1R,2S,3S,4R,5S)-5-AMINO-4-{[(2S,3R)-3- HETNAM 2 EDS AMINO-6-{[(2-HYDROXYETHYL)AMINO]METHYL}-3,4-DIHYDRO- HETNAM 3 EDS 2H-PYRAN-2-YL]OXY}-2-{[3-DEOXY-4-C-METHYL-3- HETNAM 4 EDS (METHYLAMINO)-BETA-L-ARABINOPYRANOSYL]OXY}-3- HETNAM 5 EDS HYDROXYCYCLOHEXYL]-2-HYDROXYBUTANAMIDE HETSYN EDS PLAZOMICIN FORMUL 3 CL 4(CL 1-) FORMUL 4 EDS C25 H48 N6 O10 FORMUL 8 HOH *1155(H2 O) HELIX 1 AA1 THR A 5 TYR A 17 1 13 HELIX 2 AA2 HIS A 50 HIS A 68 1 19 HELIX 3 AA3 THR A 104 LEU A 111 1 8 HELIX 4 AA4 PRO A 112 SER A 132 1 21 HELIX 5 AA5 LYS A 139 VAL A 143 5 5 HELIX 6 AA6 ASP A 145 SER A 162 1 18 HELIX 7 AA7 LYS A 166 GLU A 182 1 17 HELIX 8 AA8 ASN A 183 PHE A 187 5 5 HELIX 9 AA9 SER A 199 ASP A 201 5 3 HELIX 10 AB1 ASP A 227 SER A 232 1 6 HELIX 11 AB2 GLY A 241 LYS A 253 1 13 HELIX 12 AB3 ASP A 256 GLY A 283 1 28 HELIX 13 AB4 TYR A 284 ARG A 296 1 13 HELIX 14 AB5 THR B 5 TYR B 17 1 13 HELIX 15 AB6 HIS B 50 ILE B 67 1 18 HELIX 16 AB7 THR B 104 LEU B 111 1 8 HELIX 17 AB8 PRO B 112 ILE B 133 1 22 HELIX 18 AB9 LYS B 139 VAL B 143 5 5 HELIX 19 AC1 ASP B 145 SER B 162 1 18 HELIX 20 AC2 LYS B 166 GLU B 182 1 17 HELIX 21 AC3 ASN B 183 PHE B 187 5 5 HELIX 22 AC4 SER B 199 ASP B 201 5 3 HELIX 23 AC5 ASP B 227 SER B 232 1 6 HELIX 24 AC6 GLY B 241 LYS B 253 1 13 HELIX 25 AC7 ASP B 256 TYR B 282 1 27 HELIX 26 AC8 MET B 285 SER B 297 1 13 SHEET 1 AA1 5 ILE A 25 GLU A 30 0 SHEET 2 AA1 5 CYS A 34 ILE A 39 -1 O ALA A 36 N GLY A 29 SHEET 3 AA1 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 AA1 5 ALA A 93 THR A 96 -1 O PHE A 95 N ILE A 44 SHEET 5 AA1 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 AA2 3 VAL A 101 PRO A 102 0 SHEET 2 AA2 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 AA2 3 THR A 211 ILE A 215 -1 O THR A 211 N ASP A 206 SHEET 1 AA3 2 CYS A 192 ILE A 194 0 SHEET 2 AA3 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 SHEET 1 AA4 5 ILE B 25 GLU B 30 0 SHEET 2 AA4 5 CYS B 34 ILE B 39 -1 O ALA B 36 N GLY B 29 SHEET 3 AA4 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 AA4 5 ALA B 93 THR B 96 -1 O PHE B 95 N ILE B 44 SHEET 5 AA4 5 VAL B 78 THR B 81 -1 N VAL B 79 O GLY B 94 SHEET 1 AA5 3 VAL B 101 PRO B 102 0 SHEET 2 AA5 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 AA5 3 THR B 211 ILE B 215 -1 O THR B 211 N ASP B 206 SHEET 1 AA6 2 CYS B 192 ILE B 194 0 SHEET 2 AA6 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 SITE 1 AC1 3 VAL A 78 HOH A 552 HOH A 604 SITE 1 AC2 20 ASN B 32 ASP B 220 GLU B 235 GLU B 238 SITE 2 AC2 20 GLU B 268 TRP B 271 TYR B 284 TRP B 287 SITE 3 AC2 20 HOH B 512 HOH B 545 HOH B 565 HOH B 581 SITE 4 AC2 20 HOH B 587 HOH B 600 HOH B 627 HOH B 691 SITE 5 AC2 20 HOH B 718 HOH B 720 HOH B 729 HOH B 758 SITE 1 AC3 3 TYR B 17 PRO B 18 ASP B 19 SITE 1 AC4 1 ARG B 66 SITE 1 AC5 3 LYS B 275 GLU B 290 HOH B 759 CRYST1 43.455 101.813 72.921 90.00 98.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023012 0.000000 0.003426 0.00000 SCALE2 0.000000 0.009822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013865 0.00000