HEADER IMMUNE SYSTEM 03-JAN-18 6C15 TITLE CD1C IN COMPLEX WITH PHOSPHATIDYLCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1C; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293S KEYWDS ANTIGEN PRESENTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.S.WUN,J.ROSSJOHN REVDAT 6 04-OCT-23 6C15 1 HETSYN REVDAT 5 29-JUL-20 6C15 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 01-JAN-20 6C15 1 REMARK REVDAT 3 04-APR-18 6C15 1 JRNL REVDAT 2 28-MAR-18 6C15 1 JRNL REVDAT 1 21-MAR-18 6C15 0 JRNL AUTH K.S.WUN,J.F.REIJNEVELD,T.Y.CHENG,K.LADELL,A.P.ULDRICH, JRNL AUTH 2 J.LE NOURS,K.L.MINERS,J.E.MCLAREN,E.J.GRANT,O.L.HAIGH, JRNL AUTH 3 T.S.WATKINS,S.SULIMAN,S.IWANY,J.JIMENEZ,R.CALDERON, JRNL AUTH 4 K.L.TAMARA,S.R.LEON,M.B.MURRAY,J.A.MAYFIELD,J.D.ALTMAN, JRNL AUTH 5 A.W.PURCELL,J.J.MILES,D.I.GODFREY,S.GRAS,D.A.PRICE, JRNL AUTH 6 I.VAN RHIJN,D.B.MOODY,J.ROSSJOHN JRNL TITL T CELL AUTOREACTIVITY DIRECTED TOWARD CD1C ITSELF RATHER JRNL TITL 2 THAN TOWARD CARRIED SELF LIPIDS. JRNL REF NAT. IMMUNOL. V. 19 397 2018 JRNL REFN ESSN 1529-2916 JRNL PMID 29531339 JRNL DOI 10.1038/S41590-018-0065-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.S.WUN,J.ROSSJOHN REMARK 1 TITL TO BE ADDED LATER REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 3 NUMBER OF REFLECTIONS : 10955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 533 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 23.50 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 737 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1948 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 711 REMARK 3 BIN R VALUE (WORKING SET) : 0.1928 REMARK 3 BIN FREE R VALUE : 0.2465 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.53 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51590 REMARK 3 B22 (A**2) : 0.51590 REMARK 3 B33 (A**2) : -1.03180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.432 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2949 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4030 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 915 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 48 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 444 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2949 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3357 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|7 - A|188 A|304 - A|304 A|305 - A|305 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.0259 13.1966 17.0728 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: -0.1542 REMARK 3 T33: -0.1521 T12: -0.2895 REMARK 3 T13: 0.1048 T23: 0.1599 REMARK 3 L TENSOR REMARK 3 L11: 0.9326 L22: 3.1548 REMARK 3 L33: 6.7493 L12: 0.5570 REMARK 3 L13: -1.0935 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: 0.4065 S12: -0.5164 S13: 0.2327 REMARK 3 S21: 0.3405 S22: -0.1454 S23: -0.1534 REMARK 3 S31: -0.7248 S32: -0.3549 S33: -0.2612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|189 - A|283 } REMARK 3 ORIGIN FOR THE GROUP (A): -39.6859 16.1436 -20.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.5075 T22: -0.1911 REMARK 3 T33: -0.3400 T12: 0.5982 REMARK 3 T13: 0.1620 T23: 0.4403 REMARK 3 L TENSOR REMARK 3 L11: 5.2802 L22: 8.1899 REMARK 3 L33: 6.6309 L12: -1.7815 REMARK 3 L13: 0.9848 L23: 1.7571 REMARK 3 S TENSOR REMARK 3 S11: 0.2348 S12: 0.3445 S13: 0.3455 REMARK 3 S21: -0.5819 S22: -0.0980 S23: 0.2408 REMARK 3 S31: -0.3858 S32: -0.3854 S33: -0.1368 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|9 - B|108 } REMARK 3 ORIGIN FOR THE GROUP (A): -22.2902 18.6892 -7.3786 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: -0.2445 REMARK 3 T33: -0.0393 T12: -0.0107 REMARK 3 T13: 0.2835 T23: 0.3947 REMARK 3 L TENSOR REMARK 3 L11: 3.0854 L22: 5.8082 REMARK 3 L33: 6.0114 L12: -0.1725 REMARK 3 L13: 0.3338 L23: -0.6684 REMARK 3 S TENSOR REMARK 3 S11: 0.3174 S12: 0.3543 S13: 0.1559 REMARK 3 S21: -0.6060 S22: 0.1753 S23: -0.2562 REMARK 3 S31: -0.7739 S32: 0.5486 S33: -0.4927 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13768 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 43.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 45.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% DIOXANE; 1.6 M AMMONIUM SULFATE; REMARK 280 10 MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 244.55533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.27767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.41650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.13883 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 305.69417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 244.55533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 122.27767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.13883 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 183.41650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 305.69417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -2 REMARK 465 THR A -1 REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLU A 6 REMARK 465 HIS A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 LYS A 108 REMARK 465 PRO A 257 REMARK 465 ALA A 258 REMARK 465 ARG A 284 REMARK 465 GLU B 8 REMARK 465 ALA B 25 REMARK 465 MET B 109 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 LEU B 112 REMARK 465 VAL B 113 REMARK 465 PRO B 114 REMARK 465 ARG B 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 7 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 8 CG1 CG2 REMARK 470 SER A 9 OG REMARK 470 SER A 17 OG REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 SER A 29 OG REMARK 470 SER A 42 OG REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 SER A 44 OG REMARK 470 THR A 46 OG1 CG2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 LEU A 74 CG CD1 CD2 REMARK 470 SER A 86 OG REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 TYR A 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 90 OG REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 SER A 109 OG REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 SER A 165 OG REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 MET A 180 CG SD CE REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 SER A 194 OG REMARK 470 SER A 197 OG REMARK 470 SER A 200 OG REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 224 CG OD1 ND2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 LEU A 229 CG CD1 CD2 REMARK 470 THR A 231 OG1 CG2 REMARK 470 SER A 254 OG REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 SER A 267 OG REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 GLN A 272 CG CD OE1 NE2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 SER A 280 OG REMARK 470 LEU A 281 CG CD1 CD2 REMARK 470 VAL A 282 CG1 CG2 REMARK 470 SER B 21 OG REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 SER B 30 OG REMARK 470 SER B 38 OG REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 SER B 62 OG REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 THR B 78 OG1 CG2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 GLN B 99 CG CD OE1 NE2 REMARK 470 ILE B 102 CG1 CG2 CD1 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 107 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 108 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 8 96.39 -69.97 REMARK 500 ASP A 33 -120.56 63.36 REMARK 500 GLU A 62 -70.26 -69.29 REMARK 500 ASP A 88 78.48 -111.62 REMARK 500 TYR A 89 3.85 -61.80 REMARK 500 ASN A 128 -107.80 54.40 REMARK 500 PRO A 135 99.37 -64.53 REMARK 500 GLN A 151 -38.37 -130.89 REMARK 500 VAL A 155 -64.11 -23.79 REMARK 500 LYS A 179 -58.17 -27.19 REMARK 500 ASN A 224 -105.13 59.83 REMARK 500 SER A 254 95.77 -31.04 REMARK 500 GLU A 255 81.20 58.60 REMARK 500 ASP B 44 105.48 -49.45 REMARK 500 LYS B 58 72.10 40.82 REMARK 500 PRO B 100 155.12 -46.58 REMARK 500 ARG B 107 -127.47 -132.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 302 REMARK 610 6PL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C09 RELATED DB: PDB REMARK 900 6C09 CONTAINS THE SAME CD1C-BETA-2-MICROGLOBUILIN MOLECULE IN THIS REMARK 900 STRUCTURE DBREF 6C15 A 1 279 UNP P29017 CD1C_HUMAN 19 297 DBREF 6C15 B 11 109 UNP P61769 B2MG_HUMAN 21 119 SEQADV 6C15 GLU A -2 UNP P29017 EXPRESSION TAG SEQADV 6C15 THR A -1 UNP P29017 EXPRESSION TAG SEQADV 6C15 GLY A 0 UNP P29017 EXPRESSION TAG SEQADV 6C15 SER A 280 UNP P29017 EXPRESSION TAG SEQADV 6C15 LEU A 281 UNP P29017 EXPRESSION TAG SEQADV 6C15 VAL A 282 UNP P29017 EXPRESSION TAG SEQADV 6C15 PRO A 283 UNP P29017 EXPRESSION TAG SEQADV 6C15 ARG A 284 UNP P29017 EXPRESSION TAG SEQADV 6C15 GLU B 8 UNP P61769 EXPRESSION TAG SEQADV 6C15 THR B 9 UNP P61769 EXPRESSION TAG SEQADV 6C15 GLY B 10 UNP P61769 EXPRESSION TAG SEQADV 6C15 GLY B 110 UNP P61769 EXPRESSION TAG SEQADV 6C15 SER B 111 UNP P61769 EXPRESSION TAG SEQADV 6C15 LEU B 112 UNP P61769 EXPRESSION TAG SEQADV 6C15 VAL B 113 UNP P61769 EXPRESSION TAG SEQADV 6C15 PRO B 114 UNP P61769 EXPRESSION TAG SEQADV 6C15 ARG B 115 UNP P61769 EXPRESSION TAG SEQRES 1 A 287 GLU THR GLY ALA ASP ALA SER GLN GLU HIS VAL SER PHE SEQRES 2 A 287 HIS VAL ILE GLN ILE PHE SER PHE VAL ASN GLN SER TRP SEQRES 3 A 287 ALA ARG GLY GLN GLY SER GLY TRP LEU ASP GLU LEU GLN SEQRES 4 A 287 THR HIS GLY TRP ASP SER GLU SER GLY THR ILE ILE PHE SEQRES 5 A 287 LEU HIS ASN TRP SER LYS GLY ASN PHE SER ASN GLU GLU SEQRES 6 A 287 LEU SER ASP LEU GLU LEU LEU PHE ARG PHE TYR LEU PHE SEQRES 7 A 287 GLY LEU THR ARG GLU ILE GLN ASP HIS ALA SER GLN ASP SEQRES 8 A 287 TYR SER LYS TYR PRO PHE GLU VAL GLN VAL LYS ALA GLY SEQRES 9 A 287 CYS GLU LEU HIS SER GLY LYS SER PRO GLU GLY PHE PHE SEQRES 10 A 287 GLN VAL ALA PHE ASN GLY LEU ASP LEU LEU SER PHE GLN SEQRES 11 A 287 ASN THR THR TRP VAL PRO SER PRO GLY CYS GLY SER LEU SEQRES 12 A 287 ALA GLN SER VAL CYS HIS LEU LEU ASN HIS GLN TYR GLU SEQRES 13 A 287 GLY VAL THR GLU THR VAL TYR ASN LEU ILE ARG SER THR SEQRES 14 A 287 CYS PRO ARG PHE LEU LEU GLY LEU LEU ASP ALA GLY LYS SEQRES 15 A 287 MET TYR VAL HIS ARG GLN VAL ARG PRO GLU ALA TRP LEU SEQRES 16 A 287 SER SER ARG PRO SER LEU GLY SER GLY GLN LEU LEU LEU SEQRES 17 A 287 VAL CYS HIS ALA SER GLY PHE TYR PRO LYS PRO VAL TRP SEQRES 18 A 287 VAL THR TRP MET ARG ASN GLU GLN GLU GLN LEU GLY THR SEQRES 19 A 287 LYS HIS GLY ASP ILE LEU PRO ASN ALA ASP GLY THR TRP SEQRES 20 A 287 TYR LEU GLN VAL ILE LEU GLU VAL ALA SER GLU GLU PRO SEQRES 21 A 287 ALA GLY LEU SER CYS ARG VAL ARG HIS SER SER LEU GLY SEQRES 22 A 287 GLY GLN ASP ILE ILE LEU TYR TRP GLY SER LEU VAL PRO SEQRES 23 A 287 ARG SEQRES 1 B 108 GLU THR GLY ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SEQRES 2 B 108 SER ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU SEQRES 3 B 108 ASN CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU SEQRES 4 B 108 VAL ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL SEQRES 5 B 108 GLU HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE SEQRES 6 B 108 TYR LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS SEQRES 7 B 108 ASP GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER SEQRES 8 B 108 GLN PRO LYS ILE VAL LYS TRP ASP ARG ASP MET GLY SER SEQRES 9 B 108 LEU VAL PRO ARG HET NAG A 301 14 HET NAG A 302 11 HET NAG A 303 14 HET D12 A 304 12 HET 6PL A 305 50 HET NA A 306 1 HET SO4 A 307 5 HET BME A 308 4 HET EDO A 309 4 HET MES A 310 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM D12 DODECANE HETNAM 6PL (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7- HETNAM 2 6PL [(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4- HETNAM 3 6PL PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 6PL 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 D12 C12 H26 FORMUL 7 6PL C42 H85 N O8 P 1+ FORMUL 8 NA NA 1+ FORMUL 9 SO4 O4 S 2- FORMUL 10 BME C2 H6 O S FORMUL 11 EDO C2 H6 O2 FORMUL 12 MES C6 H13 N O4 S FORMUL 13 HOH *10(H2 O) HELIX 1 AA1 HIS A 51 GLY A 56 5 6 HELIX 2 AA2 SER A 59 SER A 86 1 28 HELIX 3 AA3 CYS A 137 GLN A 151 1 15 HELIX 4 AA4 GLY A 154 SER A 165 1 12 HELIX 5 AA5 SER A 165 GLY A 178 1 14 HELIX 6 AA6 GLY A 178 HIS A 183 1 6 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N GLY A 39 O ILE A 48 SHEET 3 AA1 8 ALA A 24 LEU A 32 -1 N GLY A 30 O THR A 37 SHEET 4 AA1 8 SER A 9 PHE A 18 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 GLU A 103 -1 O VAL A 98 N GLN A 14 SHEET 6 AA1 8 GLU A 111 PHE A 118 -1 O GLN A 115 N LYS A 99 SHEET 7 AA1 8 ASP A 122 GLN A 127 -1 O LEU A 123 N VAL A 116 SHEET 8 AA1 8 THR A 130 PRO A 133 -1 O THR A 130 N GLN A 127 SHEET 1 AA2 4 GLU A 189 PRO A 196 0 SHEET 2 AA2 4 GLN A 202 PHE A 212 -1 O LEU A 204 N ARG A 195 SHEET 3 AA2 4 TRP A 244 ALA A 253 -1 O VAL A 252 N LEU A 203 SHEET 4 AA2 4 LYS A 232 HIS A 233 -1 N LYS A 232 O ILE A 249 SHEET 1 AA3 4 GLU A 189 PRO A 196 0 SHEET 2 AA3 4 GLN A 202 PHE A 212 -1 O LEU A 204 N ARG A 195 SHEET 3 AA3 4 TRP A 244 ALA A 253 -1 O VAL A 252 N LEU A 203 SHEET 4 AA3 4 LEU A 237 PRO A 238 -1 N LEU A 237 O TYR A 245 SHEET 1 AA4 4 GLN A 226 GLU A 227 0 SHEET 2 AA4 4 VAL A 217 ARG A 223 -1 N ARG A 223 O GLN A 226 SHEET 3 AA4 4 LEU A 260 HIS A 266 -1 O SER A 261 N MET A 222 SHEET 4 AA4 4 ILE A 274 TRP A 278 -1 O ILE A 274 N VAL A 264 SHEET 1 AA5 4 LYS B 16 SER B 21 0 SHEET 2 AA5 4 ASN B 31 PHE B 40 -1 O ASN B 34 N TYR B 20 SHEET 3 AA5 4 PHE B 72 PHE B 80 -1 O PHE B 80 N ASN B 31 SHEET 4 AA5 4 GLU B 60 HIS B 61 -1 N GLU B 60 O TYR B 77 SHEET 1 AA6 4 LYS B 16 SER B 21 0 SHEET 2 AA6 4 ASN B 31 PHE B 40 -1 O ASN B 34 N TYR B 20 SHEET 3 AA6 4 PHE B 72 PHE B 80 -1 O PHE B 80 N ASN B 31 SHEET 4 AA6 4 SER B 65 PHE B 66 -1 N SER B 65 O TYR B 73 SHEET 1 AA7 4 GLU B 54 ARG B 55 0 SHEET 2 AA7 4 GLU B 46 LYS B 51 -1 N LYS B 51 O GLU B 54 SHEET 3 AA7 4 TYR B 88 ASN B 93 -1 O ALA B 89 N LEU B 50 SHEET 4 AA7 4 LYS B 101 LYS B 104 -1 O LYS B 101 N VAL B 92 SSBOND 1 CYS A 102 CYS A 167 1555 1555 2.06 SSBOND 2 CYS A 207 CYS A 262 1555 1555 2.05 SSBOND 3 CYS B 35 CYS B 90 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN A 57 C1 NAG A 302 1555 1555 1.43 LINK ND2 ASN A 128 C1 NAG A 303 1555 1555 1.44 LINK SG CYS A 137 S2 BME A 308 1555 1555 2.06 LINK O GLU A 153 NA NA A 306 1555 1555 2.92 CISPEP 1 TYR A 92 PRO A 93 0 -5.20 CISPEP 2 TYR A 213 PRO A 214 0 -3.90 CISPEP 3 HIS B 41 PRO B 42 0 1.30 CRYST1 84.255 84.255 366.833 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011869 0.006852 0.000000 0.00000 SCALE2 0.000000 0.013705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002726 0.00000