HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-JAN-18 6C18 TITLE FGFR1 KINASE COMPLEX WITH INHIBITOR SN37115 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 457-763; COMPND 5 SYNONYM: FGFR-1,BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1,BFGF-R-1, COMPND 6 FMS-LIKE TYROSINE KINASE 2,FLT-2,N-SAM,PROTO-ONCOGENE C-FGR; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YOSAATMADJA,J.B.SMAILL,C.J.SQUIRE REVDAT 2 04-OCT-23 6C18 1 REMARK REVDAT 1 16-JAN-19 6C18 0 JRNL AUTH Y.YOSAATMADJA,C.J.SQUIRE,A.V.PATTERSON,J.B.SMAILL JRNL TITL UNDERSTANDING THE STRUCTURAL REQUIREMENTS FOR COVALENT JRNL TITL 2 INHIBITION OF FGFR1-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.332 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.985 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4332 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4109 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5890 ; 1.509 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9446 ; 0.858 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 6.478 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;38.931 ;24.343 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;14.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4829 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 914 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 1.554 ; 2.664 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2156 ; 1.551 ; 2.663 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2688 ; 2.598 ; 3.986 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2689 ; 2.599 ; 3.987 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2175 ; 1.771 ; 2.863 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2172 ; 1.766 ; 2.857 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3196 ; 2.923 ; 4.211 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4857 ; 4.503 ;21.511 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4856 ; 4.502 ;21.515 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 765 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5776 16.8177 3.7057 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.1278 REMARK 3 T33: 0.0236 T12: -0.0267 REMARK 3 T13: -0.0108 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.0906 L22: 1.0508 REMARK 3 L33: 3.8688 L12: -0.2165 REMARK 3 L13: 0.8204 L23: -0.6905 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: 0.0032 S13: -0.1167 REMARK 3 S21: 0.0487 S22: -0.0246 S23: 0.1037 REMARK 3 S31: 0.2179 S32: 0.0211 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 466 B 762 REMARK 3 ORIGIN FOR THE GROUP (A): -44.8253 40.6392 22.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1821 REMARK 3 T33: 0.0354 T12: 0.0084 REMARK 3 T13: -0.0308 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.0772 L22: 1.5045 REMARK 3 L33: 3.1739 L12: -0.4889 REMARK 3 L13: 1.4771 L23: -0.8305 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1382 S13: 0.0517 REMARK 3 S21: 0.1490 S22: 0.0196 S23: 0.0777 REMARK 3 S31: -0.0543 S32: -0.0650 S33: -0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28937 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPEG 5000, 0.1 M SODIUM CACODYLATE REMARK 280 PH 7.5, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.48100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.91850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.48100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.91850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 455 REMARK 465 ALA A 456 REMARK 465 MET A 457 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 VAL A 460 REMARK 465 SER A 461 REMARK 465 GLU A 462 REMARK 465 TYR A 463 REMARK 465 GLU A 464 REMARK 465 GLU A 486 REMARK 465 GLY A 487 REMARK 465 ALA A 488 REMARK 465 PHE A 489 REMARK 465 LEU A 581 REMARK 465 GLU A 582 REMARK 465 TYR A 583 REMARK 465 ALA A 645 REMARK 465 ARG A 646 REMARK 465 ASP A 647 REMARK 465 ILE A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 ILE A 651 REMARK 465 ASP A 652 REMARK 465 TYR A 653 REMARK 465 TYR A 654 REMARK 465 LYS A 655 REMARK 465 LYS A 656 REMARK 465 THR A 657 REMARK 465 THR A 658 REMARK 465 ASN A 659 REMARK 465 GLY A 660 REMARK 465 ARG A 661 REMARK 465 LEU A 662 REMARK 465 GLY B 455 REMARK 465 ALA B 456 REMARK 465 MET B 457 REMARK 465 SER B 458 REMARK 465 GLY B 459 REMARK 465 VAL B 460 REMARK 465 SER B 461 REMARK 465 GLU B 462 REMARK 465 TYR B 463 REMARK 465 GLU B 464 REMARK 465 LEU B 465 REMARK 465 GLU B 486 REMARK 465 GLY B 487 REMARK 465 ALA B 488 REMARK 465 PHE B 489 REMARK 465 LYS B 502 REMARK 465 ASP B 503 REMARK 465 PRO B 578 REMARK 465 PRO B 579 REMARK 465 GLY B 580 REMARK 465 LEU B 581 REMARK 465 GLU B 582 REMARK 465 TYR B 583 REMARK 465 SER B 584 REMARK 465 TYR B 585 REMARK 465 ASN B 586 REMARK 465 PRO B 587 REMARK 465 SER B 588 REMARK 465 HIS B 589 REMARK 465 ASN B 590 REMARK 465 PRO B 591 REMARK 465 GLU B 592 REMARK 465 GLU B 593 REMARK 465 GLY B 643 REMARK 465 LEU B 644 REMARK 465 ALA B 645 REMARK 465 ARG B 646 REMARK 465 ASP B 647 REMARK 465 ILE B 648 REMARK 465 HIS B 649 REMARK 465 HIS B 650 REMARK 465 ILE B 651 REMARK 465 ASP B 652 REMARK 465 TYR B 653 REMARK 465 TYR B 654 REMARK 465 LYS B 655 REMARK 465 LYS B 656 REMARK 465 THR B 657 REMARK 465 THR B 658 REMARK 465 ASN B 659 REMARK 465 GLY B 660 REMARK 465 ARG B 661 REMARK 465 LEU B 662 REMARK 465 ASN B 763 REMARK 465 GLN B 764 REMARK 465 GLU B 765 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 465 CG CD1 CD2 REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 517 CD CE NZ REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 LYS A 523 CE NZ REMARK 470 ASP A 554 CG OD1 OD2 REMARK 470 ASN A 590 CG OD1 ND2 REMARK 470 ARG A 627 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 675 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 707 CG CD OE1 OE2 REMARK 470 GLU A 708 CG CD OE1 OE2 REMARK 470 LYS A 711 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 MET A 731 CG SD CE REMARK 470 GLU A 765 CG CD OE1 OE2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 GLN B 491 CG CD OE1 NE2 REMARK 470 LYS B 504 CG CD CE NZ REMARK 470 ARG B 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 517 CG CD CE NZ REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 LYS B 523 CE NZ REMARK 470 LYS B 618 CG CD CE NZ REMARK 470 ARG B 627 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 673 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 711 CG CD CE NZ REMARK 470 LYS B 714 CG CD CE NZ REMARK 470 MET B 731 CG SD CE REMARK 470 SER B 762 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 570 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 504 55.83 -149.87 REMARK 500 GLN A 553 -71.01 -95.77 REMARK 500 PRO A 556 135.56 -39.15 REMARK 500 ASN A 590 68.29 -113.21 REMARK 500 ARG A 622 -8.62 83.18 REMARK 500 ASP A 623 41.45 -152.29 REMARK 500 ASP B 468 88.36 -162.70 REMARK 500 ARG B 622 -7.13 77.43 REMARK 500 ASP B 623 42.25 -151.65 REMARK 500 TYR B 701 57.07 38.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 YY5 B 801 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YY5 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YY5 B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UOK RELATED DB: PDB REMARK 900 5UOK CONTAINS THE SAME PROTEIN COMPLEXED WITH RELATED INHIBITOR REMARK 900 SN36985 REMARK 900 RELATED ID: 5UOM RELATED DB: PDB REMARK 900 RELATED ID: 5UON RELATED DB: PDB DBREF 6C18 A 459 765 UNP P11362 FGFR1_HUMAN 457 763 DBREF 6C18 B 459 765 UNP P11362 FGFR1_HUMAN 457 763 SEQADV 6C18 GLY A 455 UNP P11362 EXPRESSION TAG SEQADV 6C18 ALA A 456 UNP P11362 EXPRESSION TAG SEQADV 6C18 MET A 457 UNP P11362 EXPRESSION TAG SEQADV 6C18 SER A 458 UNP P11362 EXPRESSION TAG SEQADV 6C18 ALA A 488 UNP P11362 CYS 486 ENGINEERED MUTATION SEQADV 6C18 SER A 584 UNP P11362 CYS 582 ENGINEERED MUTATION SEQADV 6C18 GLY B 455 UNP P11362 EXPRESSION TAG SEQADV 6C18 ALA B 456 UNP P11362 EXPRESSION TAG SEQADV 6C18 MET B 457 UNP P11362 EXPRESSION TAG SEQADV 6C18 SER B 458 UNP P11362 EXPRESSION TAG SEQADV 6C18 ALA B 488 UNP P11362 CYS 486 ENGINEERED MUTATION SEQADV 6C18 SER B 584 UNP P11362 CYS 582 ENGINEERED MUTATION SEQRES 1 A 311 GLY ALA MET SER GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 2 A 311 ASP PRO ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU SEQRES 3 A 311 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 4 A 311 LEU ALA GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN SEQRES 5 A 311 ARG VAL THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP SEQRES 6 A 311 ALA THR GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET SEQRES 7 A 311 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 8 A 311 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 9 A 311 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 10 A 311 TYR LEU GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER SEQRES 11 A 311 TYR ASN PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER SEQRES 12 A 311 LYS ASP LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY SEQRES 13 A 311 MET GLU TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP SEQRES 14 A 311 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL SEQRES 15 A 311 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS SEQRES 16 A 311 HIS ILE ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU SEQRES 17 A 311 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 18 A 311 ILE TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 A 311 LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 20 A 311 PRO GLY VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 21 A 311 GLU GLY HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN SEQRES 22 A 311 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 23 A 311 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 24 A 311 LEU ASP ARG ILE VAL ALA LEU THR SER ASN GLN GLU SEQRES 1 B 311 GLY ALA MET SER GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 2 B 311 ASP PRO ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU SEQRES 3 B 311 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 4 B 311 LEU ALA GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN SEQRES 5 B 311 ARG VAL THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP SEQRES 6 B 311 ALA THR GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET SEQRES 7 B 311 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 8 B 311 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 9 B 311 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 10 B 311 TYR LEU GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER SEQRES 11 B 311 TYR ASN PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER SEQRES 12 B 311 LYS ASP LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY SEQRES 13 B 311 MET GLU TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP SEQRES 14 B 311 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL SEQRES 15 B 311 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS SEQRES 16 B 311 HIS ILE ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU SEQRES 17 B 311 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 18 B 311 ILE TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 B 311 LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 20 B 311 PRO GLY VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 21 B 311 GLU GLY HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN SEQRES 22 B 311 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 23 B 311 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 24 B 311 LEU ASP ARG ILE VAL ALA LEU THR SER ASN GLN GLU HET YY5 A 801 40 HET SO4 A 802 5 HET YY5 B 801 38 HETNAM YY5 3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-{(3S)-1-[(2E)-4- HETNAM 2 YY5 (DIMETHYLAMINO)BUT-2-ENOYL]PYRROLIDIN-3-YL}-7- HETNAM 3 YY5 [(PROPAN-2-YL)AMINO]-3,4-DIHYDROPYRIMIDO[4,5- HETNAM 4 YY5 D]PYRIMIDIN-2(1H)-ONE HETNAM SO4 SULFATE ION FORMUL 3 YY5 2(C27 H35 CL2 N7 O4) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *17(H2 O) HELIX 1 AA1 PRO A 474 ASP A 476 5 3 HELIX 2 AA2 THR A 521 GLY A 539 1 19 HELIX 3 AA3 ASN A 568 ALA A 575 1 8 HELIX 4 AA4 SER A 596 LYS A 617 1 22 HELIX 5 AA5 ALA A 625 ARG A 627 5 3 HELIX 6 AA6 ALA A 668 ARG A 675 1 8 HELIX 7 AA7 THR A 678 THR A 695 1 18 HELIX 8 AA8 PRO A 705 GLU A 715 1 11 HELIX 9 AA9 THR A 726 TRP A 737 1 12 HELIX 10 AB1 VAL A 740 ARG A 744 5 5 HELIX 11 AB2 THR A 746 THR A 761 1 16 HELIX 12 AB3 PRO B 474 ASP B 476 5 3 HELIX 13 AB4 THR B 521 GLY B 539 1 19 HELIX 14 AB5 ASN B 568 ALA B 575 1 8 HELIX 15 AB6 SER B 596 LYS B 617 1 22 HELIX 16 AB7 ALA B 625 ARG B 627 5 3 HELIX 17 AB8 PRO B 663 MET B 667 5 5 HELIX 18 AB9 ALA B 668 ARG B 675 1 8 HELIX 19 AC1 THR B 678 THR B 695 1 18 HELIX 20 AC2 PRO B 705 GLU B 715 1 11 HELIX 21 AC3 THR B 726 TRP B 737 1 12 HELIX 22 AC4 VAL B 740 ARG B 744 5 5 HELIX 23 AC5 THR B 746 THR B 761 1 16 SHEET 1 AA1 5 LEU A 478 GLY A 485 0 SHEET 2 AA1 5 GLN A 491 ILE A 498 -1 O VAL A 492 N LEU A 484 SHEET 3 AA1 5 VAL A 508 MET A 515 -1 O THR A 509 N ALA A 497 SHEET 4 AA1 5 TYR A 558 VAL A 561 -1 O VAL A 561 N ALA A 512 SHEET 5 AA1 5 LEU A 547 CYS A 551 -1 N LEU A 548 O ILE A 560 SHEET 1 AA2 2 VAL A 629 VAL A 631 0 SHEET 2 AA2 2 MET A 637 ILE A 639 -1 O LYS A 638 N LEU A 630 SHEET 1 AA3 5 LEU B 478 PRO B 483 0 SHEET 2 AA3 5 GLN B 491 ILE B 498 -1 O LEU B 494 N LYS B 482 SHEET 3 AA3 5 VAL B 508 MET B 515 -1 O VAL B 511 N ALA B 495 SHEET 4 AA3 5 TYR B 558 GLU B 562 -1 O VAL B 561 N ALA B 512 SHEET 5 AA3 5 LEU B 547 CYS B 551 -1 N LEU B 548 O ILE B 560 SHEET 1 AA4 2 VAL B 629 VAL B 631 0 SHEET 2 AA4 2 MET B 637 ILE B 639 -1 O LYS B 638 N LEU B 630 SITE 1 AC1 18 LEU A 484 VAL A 492 ALA A 512 LYS A 514 SITE 2 AC1 18 GLU A 531 MET A 535 ILE A 545 VAL A 559 SITE 3 AC1 18 VAL A 561 GLU A 562 ALA A 564 ASN A 568 SITE 4 AC1 18 GLU A 571 LEU A 630 ALA A 640 ASP A 641 SITE 5 AC1 18 PHE A 642 HOH A 902 SITE 1 AC2 3 GLY A 539 LYS A 540 LYS A 618 SITE 1 AC3 12 ALA B 512 LYS B 514 GLU B 531 VAL B 559 SITE 2 AC3 12 VAL B 561 GLU B 562 ALA B 564 GLY B 567 SITE 3 AC3 12 GLU B 571 LEU B 630 ALA B 640 ASP B 641 CRYST1 208.962 49.837 65.085 90.00 106.19 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004786 0.000000 0.001389 0.00000 SCALE2 0.000000 0.020065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015999 0.00000