HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-JAN-18 6C1B TITLE FGFR1 KINASE COMPLEX WITH INHIBITOR SN37118 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 457-763; COMPND 5 SYNONYM: FGFR-1,BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1,BFGF-R-1, COMPND 6 FMS-LIKE TYROSINE KINASE 2,FLT-2,N-SAM,PROTO-ONCOGENE C-FGR; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YOSAATMADJA,J.B.SMAILL,C.J.SQUIRE REVDAT 3 04-OCT-23 6C1B 1 REMARK REVDAT 2 01-JAN-20 6C1B 1 REMARK REVDAT 1 16-JAN-19 6C1B 0 JRNL AUTH Y.YOSAATMADJA,C.J.SQUIRE,A.V.PATTERSON,J.B.SMAILL JRNL TITL UNDERSTANDING THE STRUCTURAL REQUIREMENTS FOR COVALENT JRNL TITL 2 INHIBITION OF FGFR1-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 44149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 0.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4261 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4047 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5791 ; 1.655 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9294 ; 0.908 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;37.607 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;14.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4739 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2115 ; 1.565 ; 2.381 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2114 ; 1.564 ; 2.380 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2633 ; 2.465 ; 3.552 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2634 ; 2.465 ; 3.553 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 1.898 ; 2.602 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2147 ; 1.897 ; 2.604 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3156 ; 2.926 ; 3.829 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4773 ; 4.858 ;19.543 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4759 ; 4.854 ;19.494 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 765 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0653 17.5217 3.4045 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.2762 REMARK 3 T33: 0.0187 T12: 0.0035 REMARK 3 T13: -0.0101 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.5077 L22: 0.8254 REMARK 3 L33: 3.5438 L12: -0.0397 REMARK 3 L13: 1.0959 L23: -0.7398 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.0218 S13: -0.0633 REMARK 3 S21: 0.0537 S22: -0.0289 S23: 0.0822 REMARK 3 S31: 0.1345 S32: 0.0496 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 463 B 762 REMARK 3 ORIGIN FOR THE GROUP (A): -46.8059 41.3160 22.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.2503 REMARK 3 T33: 0.0983 T12: 0.0108 REMARK 3 T13: -0.0257 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.5587 L22: 1.0393 REMARK 3 L33: 2.8609 L12: -0.2912 REMARK 3 L13: 0.9585 L23: -0.8993 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.2352 S13: 0.0492 REMARK 3 S21: 0.0821 S22: -0.0314 S23: 0.0735 REMARK 3 S31: -0.0734 S32: -0.0305 S33: 0.0136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MPEG 5000, 0.1 M SODIUM CACODYLATE REMARK 280 PH 7.5, 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.75700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.09650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.75700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.09650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 455 REMARK 465 ALA A 456 REMARK 465 MET A 457 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 VAL A 460 REMARK 465 SER A 461 REMARK 465 GLU A 462 REMARK 465 TYR A 463 REMARK 465 GLU A 464 REMARK 465 GLU A 486 REMARK 465 GLY A 487 REMARK 465 ALA A 488 REMARK 465 PHE A 489 REMARK 465 GLY A 490 REMARK 465 PRO A 579 REMARK 465 GLY A 580 REMARK 465 LEU A 581 REMARK 465 GLU A 582 REMARK 465 TYR A 583 REMARK 465 SER A 584 REMARK 465 TYR A 585 REMARK 465 ASN A 586 REMARK 465 PRO A 587 REMARK 465 SER A 588 REMARK 465 HIS A 589 REMARK 465 ASN A 590 REMARK 465 PRO A 591 REMARK 465 ALA A 645 REMARK 465 ARG A 646 REMARK 465 ASP A 647 REMARK 465 ILE A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 ILE A 651 REMARK 465 ASP A 652 REMARK 465 TYR A 653 REMARK 465 TYR A 654 REMARK 465 LYS A 655 REMARK 465 LYS A 656 REMARK 465 THR A 657 REMARK 465 THR A 658 REMARK 465 ASN A 659 REMARK 465 GLY A 660 REMARK 465 ARG A 661 REMARK 465 LEU A 662 REMARK 465 GLY B 455 REMARK 465 ALA B 456 REMARK 465 MET B 457 REMARK 465 SER B 458 REMARK 465 GLY B 459 REMARK 465 VAL B 460 REMARK 465 SER B 461 REMARK 465 GLU B 462 REMARK 465 GLY B 487 REMARK 465 ALA B 488 REMARK 465 PHE B 489 REMARK 465 GLY B 499 REMARK 465 LEU B 500 REMARK 465 ASP B 501 REMARK 465 LYS B 502 REMARK 465 ASP B 503 REMARK 465 LYS B 504 REMARK 465 PRO B 505 REMARK 465 ASN B 506 REMARK 465 PRO B 578 REMARK 465 PRO B 579 REMARK 465 GLY B 580 REMARK 465 LEU B 581 REMARK 465 GLU B 582 REMARK 465 TYR B 583 REMARK 465 SER B 584 REMARK 465 TYR B 585 REMARK 465 ASN B 586 REMARK 465 PRO B 587 REMARK 465 SER B 588 REMARK 465 HIS B 589 REMARK 465 ASN B 590 REMARK 465 PRO B 591 REMARK 465 GLU B 592 REMARK 465 GLU B 593 REMARK 465 ALA B 645 REMARK 465 ARG B 646 REMARK 465 ASP B 647 REMARK 465 ILE B 648 REMARK 465 HIS B 649 REMARK 465 HIS B 650 REMARK 465 ILE B 651 REMARK 465 ASP B 652 REMARK 465 TYR B 653 REMARK 465 TYR B 654 REMARK 465 LYS B 655 REMARK 465 LYS B 656 REMARK 465 THR B 657 REMARK 465 THR B 658 REMARK 465 ASN B 659 REMARK 465 GLY B 660 REMARK 465 ARG B 661 REMARK 465 ASN B 763 REMARK 465 GLN B 764 REMARK 465 GLU B 765 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 ASP A 503 CG OD1 OD2 REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 SER A 518 OG REMARK 470 ASP A 519 CG OD1 OD2 REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 ASP A 554 CG OD1 OD2 REMARK 470 GLN A 594 CG CD OE1 NE2 REMARK 470 ARG A 627 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 673 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 711 CG CD CE NZ REMARK 470 LYS A 714 CG CD CE NZ REMARK 470 SER A 762 OG REMARK 470 GLU A 765 CG CD OE1 OE2 REMARK 470 GLU B 464 CG CD OE1 OE2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 GLU B 486 CG CD OE1 OE2 REMARK 470 ILE B 498 CG1 CG2 CD1 REMARK 470 ARG B 507 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 517 CD CE NZ REMARK 470 GLU B 522 CG CD OE1 OE2 REMARK 470 LYS B 523 CG CD CE NZ REMARK 470 LYS B 540 CG CD CE NZ REMARK 470 LYS B 618 CG CD CE NZ REMARK 470 LEU B 662 CG CD1 CD2 REMARK 470 LEU B 672 CG CD1 CD2 REMARK 470 PHE B 673 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 675 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 676 CG1 CG2 CD1 REMARK 470 LYS B 711 CG CD CE NZ REMARK 470 LYS B 714 CG CD CE NZ REMARK 470 ASN B 724 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 570 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 570 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 570 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 504 74.52 -108.30 REMARK 500 ASP A 519 76.76 -104.19 REMARK 500 GLN A 553 -76.06 -101.81 REMARK 500 ASP A 554 32.51 -72.81 REMARK 500 ARG A 622 -18.08 85.63 REMARK 500 ASP A 623 47.11 -146.82 REMARK 500 ASN A 724 77.94 -118.50 REMARK 500 ARG B 622 -19.17 87.75 REMARK 500 ASP B 623 47.75 -148.45 REMARK 500 ARG B 675 53.85 27.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 643 LEU B 644 -145.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YY4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YY4 B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C18 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH RELATED INHIBITOR REMARK 900 RELATED ID: 6C19 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH RELATED INHIBITOR DBREF 6C1B A 459 765 UNP P11362 FGFR1_HUMAN 457 763 DBREF 6C1B B 459 765 UNP P11362 FGFR1_HUMAN 457 763 SEQADV 6C1B GLY A 455 UNP P11362 EXPRESSION TAG SEQADV 6C1B ALA A 456 UNP P11362 EXPRESSION TAG SEQADV 6C1B MET A 457 UNP P11362 EXPRESSION TAG SEQADV 6C1B SER A 458 UNP P11362 EXPRESSION TAG SEQADV 6C1B ALA A 488 UNP P11362 CYS 486 ENGINEERED MUTATION SEQADV 6C1B SER A 584 UNP P11362 CYS 582 ENGINEERED MUTATION SEQADV 6C1B GLY B 455 UNP P11362 EXPRESSION TAG SEQADV 6C1B ALA B 456 UNP P11362 EXPRESSION TAG SEQADV 6C1B MET B 457 UNP P11362 EXPRESSION TAG SEQADV 6C1B SER B 458 UNP P11362 EXPRESSION TAG SEQADV 6C1B ALA B 488 UNP P11362 CYS 486 ENGINEERED MUTATION SEQADV 6C1B SER B 584 UNP P11362 CYS 582 ENGINEERED MUTATION SEQRES 1 A 311 GLY ALA MET SER GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 2 A 311 ASP PRO ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU SEQRES 3 A 311 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 4 A 311 LEU ALA GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN SEQRES 5 A 311 ARG VAL THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP SEQRES 6 A 311 ALA THR GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET SEQRES 7 A 311 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 8 A 311 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 9 A 311 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 10 A 311 TYR LEU GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER SEQRES 11 A 311 TYR ASN PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER SEQRES 12 A 311 LYS ASP LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY SEQRES 13 A 311 MET GLU TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP SEQRES 14 A 311 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL SEQRES 15 A 311 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS SEQRES 16 A 311 HIS ILE ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU SEQRES 17 A 311 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 18 A 311 ILE TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 A 311 LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 20 A 311 PRO GLY VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 21 A 311 GLU GLY HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN SEQRES 22 A 311 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 23 A 311 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 24 A 311 LEU ASP ARG ILE VAL ALA LEU THR SER ASN GLN GLU SEQRES 1 B 311 GLY ALA MET SER GLY VAL SER GLU TYR GLU LEU PRO GLU SEQRES 2 B 311 ASP PRO ARG TRP GLU LEU PRO ARG ASP ARG LEU VAL LEU SEQRES 3 B 311 GLY LYS PRO LEU GLY GLU GLY ALA PHE GLY GLN VAL VAL SEQRES 4 B 311 LEU ALA GLU ALA ILE GLY LEU ASP LYS ASP LYS PRO ASN SEQRES 5 B 311 ARG VAL THR LYS VAL ALA VAL LYS MET LEU LYS SER ASP SEQRES 6 B 311 ALA THR GLU LYS ASP LEU SER ASP LEU ILE SER GLU MET SEQRES 7 B 311 GLU MET MET LYS MET ILE GLY LYS HIS LYS ASN ILE ILE SEQRES 8 B 311 ASN LEU LEU GLY ALA CYS THR GLN ASP GLY PRO LEU TYR SEQRES 9 B 311 VAL ILE VAL GLU TYR ALA SER LYS GLY ASN LEU ARG GLU SEQRES 10 B 311 TYR LEU GLN ALA ARG ARG PRO PRO GLY LEU GLU TYR SER SEQRES 11 B 311 TYR ASN PRO SER HIS ASN PRO GLU GLU GLN LEU SER SER SEQRES 12 B 311 LYS ASP LEU VAL SER CYS ALA TYR GLN VAL ALA ARG GLY SEQRES 13 B 311 MET GLU TYR LEU ALA SER LYS LYS CYS ILE HIS ARG ASP SEQRES 14 B 311 LEU ALA ALA ARG ASN VAL LEU VAL THR GLU ASP ASN VAL SEQRES 15 B 311 MET LYS ILE ALA ASP PHE GLY LEU ALA ARG ASP ILE HIS SEQRES 16 B 311 HIS ILE ASP TYR TYR LYS LYS THR THR ASN GLY ARG LEU SEQRES 17 B 311 PRO VAL LYS TRP MET ALA PRO GLU ALA LEU PHE ASP ARG SEQRES 18 B 311 ILE TYR THR HIS GLN SER ASP VAL TRP SER PHE GLY VAL SEQRES 19 B 311 LEU LEU TRP GLU ILE PHE THR LEU GLY GLY SER PRO TYR SEQRES 20 B 311 PRO GLY VAL PRO VAL GLU GLU LEU PHE LYS LEU LEU LYS SEQRES 21 B 311 GLU GLY HIS ARG MET ASP LYS PRO SER ASN CYS THR ASN SEQRES 22 B 311 GLU LEU TYR MET MET MET ARG ASP CYS TRP HIS ALA VAL SEQRES 23 B 311 PRO SER GLN ARG PRO THR PHE LYS GLN LEU VAL GLU ASP SEQRES 24 B 311 LEU ASP ARG ILE VAL ALA LEU THR SER ASN GLN GLU HET YY4 A 801 43 HET YY4 B 801 43 HETNAM YY4 3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-{(3S)-1-[(2E)-4- HETNAM 2 YY4 (DIMETHYLAMINO)BUT-2-ENOYL]PYRROLIDIN-3-YL}-7- HETNAM 3 YY4 (PHENYLAMINO)-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN- HETNAM 4 YY4 2(1H)-ONE FORMUL 3 YY4 2(C30 H33 CL2 N7 O4) FORMUL 5 HOH *67(H2 O) HELIX 1 AA1 PRO A 474 ASP A 476 5 3 HELIX 2 AA2 THR A 521 GLY A 539 1 19 HELIX 3 AA3 ASN A 568 ALA A 575 1 8 HELIX 4 AA4 SER A 596 LYS A 617 1 22 HELIX 5 AA5 ALA A 625 ARG A 627 5 3 HELIX 6 AA6 PRO A 663 MET A 667 5 5 HELIX 7 AA7 ALA A 668 ARG A 675 1 8 HELIX 8 AA8 THR A 678 THR A 695 1 18 HELIX 9 AA9 PRO A 705 GLU A 707 5 3 HELIX 10 AB1 GLU A 708 GLU A 715 1 8 HELIX 11 AB2 THR A 726 TRP A 737 1 12 HELIX 12 AB3 VAL A 740 ARG A 744 5 5 HELIX 13 AB4 THR A 746 THR A 761 1 16 HELIX 14 AB5 PRO B 474 ASP B 476 5 3 HELIX 15 AB6 THR B 521 GLY B 539 1 19 HELIX 16 AB7 ASN B 568 ALA B 575 1 8 HELIX 17 AB8 SER B 596 LYS B 617 1 22 HELIX 18 AB9 ALA B 625 ARG B 627 5 3 HELIX 19 AC1 LEU B 662 MET B 667 5 6 HELIX 20 AC2 ALA B 668 ARG B 675 1 8 HELIX 21 AC3 THR B 678 THR B 695 1 18 HELIX 22 AC4 PRO B 705 GLU B 715 1 11 HELIX 23 AC5 THR B 726 TRP B 737 1 12 HELIX 24 AC6 VAL B 740 ARG B 744 5 5 HELIX 25 AC7 THR B 746 THR B 761 1 16 SHEET 1 AA1 5 LEU A 478 PRO A 483 0 SHEET 2 AA1 5 VAL A 492 ILE A 498 -1 O GLU A 496 N VAL A 479 SHEET 3 AA1 5 VAL A 508 LYS A 514 -1 O THR A 509 N ALA A 497 SHEET 4 AA1 5 TYR A 558 GLU A 562 -1 O VAL A 561 N ALA A 512 SHEET 5 AA1 5 LEU A 547 CYS A 551 -1 N LEU A 548 O ILE A 560 SHEET 1 AA2 2 VAL A 629 VAL A 631 0 SHEET 2 AA2 2 MET A 637 ILE A 639 -1 O LYS A 638 N LEU A 630 SHEET 1 AA3 5 LEU B 478 GLY B 485 0 SHEET 2 AA3 5 GLN B 491 ALA B 497 -1 O VAL B 492 N GLY B 485 SHEET 3 AA3 5 THR B 509 MET B 515 -1 O THR B 509 N ALA B 497 SHEET 4 AA3 5 TYR B 558 GLU B 562 -1 O VAL B 561 N ALA B 512 SHEET 5 AA3 5 LEU B 547 CYS B 551 -1 N GLY B 549 O ILE B 560 SHEET 1 AA4 2 VAL B 629 VAL B 631 0 SHEET 2 AA4 2 MET B 637 ILE B 639 -1 O LYS B 638 N LEU B 630 SITE 1 AC1 16 LEU A 484 VAL A 492 LYS A 514 GLU A 531 SITE 2 AC1 16 MET A 535 VAL A 559 VAL A 561 GLU A 562 SITE 3 AC1 16 ALA A 564 GLY A 567 ASN A 568 GLU A 571 SITE 4 AC1 16 LEU A 630 ALA A 640 ASP A 641 HOH A 929 SITE 1 AC2 16 LEU B 484 VAL B 492 LYS B 514 GLU B 531 SITE 2 AC2 16 VAL B 559 VAL B 561 GLU B 562 TYR B 563 SITE 3 AC2 16 ALA B 564 GLY B 567 ASN B 568 GLU B 571 SITE 4 AC2 16 LEU B 630 ALA B 640 ASP B 641 HOH B 904 CRYST1 213.514 52.193 65.795 90.00 107.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004684 0.000000 0.001434 0.00000 SCALE2 0.000000 0.019160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015895 0.00000