data_6C1T # _entry.id 6C1T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6C1T pdb_00006c1t 10.2210/pdb6c1t/pdb WWPDB D_1000230207 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-14 2 'Structure model' 1 1 2018-04-18 3 'Structure model' 1 2 2018-05-23 4 'Structure model' 1 3 2024-03-13 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.name' 11 3 'Structure model' '_citation.journal_volume' 12 3 'Structure model' '_citation.page_first' 13 3 'Structure model' '_citation.page_last' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C1T _pdbx_database_status.recvd_initial_deposition_date 2018-01-05 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lei, M.' 1 ? 'Tempel, W.' 2 ? 'Arrowsmith, C.H.' 3 ? 'Bountra, C.' 4 ? 'Edwards, A.M.' 5 ? 'Min, J.' 6 ? 'Structural Genomics Consortium (SGC)' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 293 _citation.language ? _citation.page_first 7344 _citation.page_last 7354 _citation.title 'Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA118.001785 _citation.pdbx_database_id_PubMed 29567833 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, K.' 1 ? primary 'Xu, C.' 2 ? primary 'Lei, M.' 3 ? primary 'Yang, A.' 4 ? primary 'Loppnau, P.' 5 ? primary 'Hughes, T.R.' 6 ? primary 'Min, J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 2' 8791.171 2 ? ? ? ? 2 polymer syn '12-mer DNA' 3597.371 1 ? ? ? ? 3 polymer syn '12-mer DNA' 3743.440 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn 'UNKNOWN ATOM OR ION' ? 24 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Demethylase,DMTase,Methyl-CpG-binding protein MBD2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQK GATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQK A,D ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DT)(DA)(5CM)(DA)(DC)(DT)(DC)(DC)(DG)' GCCTACACTCCG B ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DA)(DG)(DT)(DG)(DT)(DA)(DG)(DG)(DC)' CGGAGTGTAGGC C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 'UNKNOWN ATOM OR ION' UNX 6 GLYCEROL GOL 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 THR n 1 4 GLU n 1 5 SER n 1 6 GLY n 1 7 LYS n 1 8 ARG n 1 9 MET n 1 10 ASP n 1 11 CYS n 1 12 PRO n 1 13 ALA n 1 14 LEU n 1 15 PRO n 1 16 PRO n 1 17 GLY n 1 18 TRP n 1 19 LYS n 1 20 LYS n 1 21 GLU n 1 22 GLU n 1 23 VAL n 1 24 ILE n 1 25 ARG n 1 26 LYS n 1 27 SER n 1 28 GLY n 1 29 LEU n 1 30 SER n 1 31 ALA n 1 32 GLY n 1 33 LYS n 1 34 SER n 1 35 ASP n 1 36 VAL n 1 37 TYR n 1 38 TYR n 1 39 PHE n 1 40 SER n 1 41 PRO n 1 42 SER n 1 43 GLY n 1 44 LYS n 1 45 LYS n 1 46 PHE n 1 47 ARG n 1 48 SER n 1 49 LYS n 1 50 PRO n 1 51 GLN n 1 52 LEU n 1 53 ALA n 1 54 ARG n 1 55 TYR n 1 56 LEU n 1 57 GLY n 1 58 ASN n 1 59 THR n 1 60 VAL n 1 61 ASP n 1 62 LEU n 1 63 SER n 1 64 SER n 1 65 PHE n 1 66 ASP n 1 67 PHE n 1 68 ARG n 1 69 THR n 1 70 GLY n 1 71 LYS n 1 72 MET n 1 73 MET n 1 74 PRO n 1 75 SER n 1 76 LYS n 1 77 LEU n 1 78 GLN n 1 79 LYS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DA n 2 6 5CM n 2 7 DA n 2 8 DC n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DG n 3 1 DC n 3 2 DG n 3 3 DG n 3 4 DA n 3 5 DG n 3 6 DT n 3 7 DG n 3 8 DT n 3 9 DA n 3 10 DG n 3 11 DG n 3 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MBD2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 142 ? ? ? A . n A 1 2 ALA 2 143 ? ? ? A . n A 1 3 THR 3 144 ? ? ? A . n A 1 4 GLU 4 145 ? ? ? A . n A 1 5 SER 5 146 ? ? ? A . n A 1 6 GLY 6 147 ? ? ? A . n A 1 7 LYS 7 148 148 LYS LYS A . n A 1 8 ARG 8 149 149 ARG ARG A . n A 1 9 MET 9 150 150 MET MET A . n A 1 10 ASP 10 151 151 ASP ASP A . n A 1 11 CYS 11 152 152 CYS CYS A . n A 1 12 PRO 12 153 153 PRO PRO A . n A 1 13 ALA 13 154 154 ALA ALA A . n A 1 14 LEU 14 155 155 LEU LEU A . n A 1 15 PRO 15 156 156 PRO PRO A . n A 1 16 PRO 16 157 157 PRO PRO A . n A 1 17 GLY 17 158 158 GLY GLY A . n A 1 18 TRP 18 159 159 TRP TRP A . n A 1 19 LYS 19 160 160 LYS LYS A . n A 1 20 LYS 20 161 161 LYS LYS A . n A 1 21 GLU 21 162 162 GLU GLU A . n A 1 22 GLU 22 163 163 GLU GLU A . n A 1 23 VAL 23 164 164 VAL VAL A . n A 1 24 ILE 24 165 165 ILE ILE A . n A 1 25 ARG 25 166 166 ARG ARG A . n A 1 26 LYS 26 167 167 LYS LYS A . n A 1 27 SER 27 168 168 SER SER A . n A 1 28 GLY 28 169 169 GLY GLY A . n A 1 29 LEU 29 170 170 LEU LEU A . n A 1 30 SER 30 171 171 SER SER A . n A 1 31 ALA 31 172 172 ALA ALA A . n A 1 32 GLY 32 173 173 GLY GLY A . n A 1 33 LYS 33 174 174 LYS LYS A . n A 1 34 SER 34 175 175 SER SER A . n A 1 35 ASP 35 176 176 ASP ASP A . n A 1 36 VAL 36 177 177 VAL VAL A . n A 1 37 TYR 37 178 178 TYR TYR A . n A 1 38 TYR 38 179 179 TYR TYR A . n A 1 39 PHE 39 180 180 PHE PHE A . n A 1 40 SER 40 181 181 SER SER A . n A 1 41 PRO 41 182 182 PRO PRO A . n A 1 42 SER 42 183 183 SER SER A . n A 1 43 GLY 43 184 184 GLY GLY A . n A 1 44 LYS 44 185 185 LYS LYS A . n A 1 45 LYS 45 186 186 LYS LYS A . n A 1 46 PHE 46 187 187 PHE PHE A . n A 1 47 ARG 47 188 188 ARG ARG A . n A 1 48 SER 48 189 189 SER SER A . n A 1 49 LYS 49 190 190 LYS LYS A . n A 1 50 PRO 50 191 191 PRO PRO A . n A 1 51 GLN 51 192 192 GLN GLN A . n A 1 52 LEU 52 193 193 LEU LEU A . n A 1 53 ALA 53 194 194 ALA ALA A . n A 1 54 ARG 54 195 195 ARG ARG A . n A 1 55 TYR 55 196 196 TYR TYR A . n A 1 56 LEU 56 197 197 LEU LEU A . n A 1 57 GLY 57 198 198 GLY GLY A . n A 1 58 ASN 58 199 199 ASN ASN A . n A 1 59 THR 59 200 200 THR THR A . n A 1 60 VAL 60 201 201 VAL VAL A . n A 1 61 ASP 61 202 202 ASP ASP A . n A 1 62 LEU 62 203 203 LEU LEU A . n A 1 63 SER 63 204 204 SER SER A . n A 1 64 SER 64 205 205 SER SER A . n A 1 65 PHE 65 206 206 PHE PHE A . n A 1 66 ASP 66 207 207 ASP ASP A . n A 1 67 PHE 67 208 208 PHE PHE A . n A 1 68 ARG 68 209 209 ARG ARG A . n A 1 69 THR 69 210 210 THR THR A . n A 1 70 GLY 70 211 211 GLY GLY A . n A 1 71 LYS 71 212 212 LYS LYS A . n A 1 72 MET 72 213 213 MET MET A . n A 1 73 MET 73 214 214 MET MET A . n A 1 74 PRO 74 215 215 PRO PRO A . n A 1 75 SER 75 216 ? ? ? A . n A 1 76 LYS 76 217 ? ? ? A . n A 1 77 LEU 77 218 ? ? ? A . n A 1 78 GLN 78 219 ? ? ? A . n A 1 79 LYS 79 220 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 5CM 6 6 6 5CM 5CM B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DG 2 2 2 DG DG C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DG 5 5 5 DG DG C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DG 7 7 7 DG DG C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DG 10 10 10 DG DG C . n C 3 11 DG 11 11 11 DG DG C . n C 3 12 DC 12 12 12 DC DC C . n D 1 1 GLY 1 142 ? ? ? D . n D 1 2 ALA 2 143 ? ? ? D . n D 1 3 THR 3 144 ? ? ? D . n D 1 4 GLU 4 145 ? ? ? D . n D 1 5 SER 5 146 ? ? ? D . n D 1 6 GLY 6 147 ? ? ? D . n D 1 7 LYS 7 148 ? ? ? D . n D 1 8 ARG 8 149 149 ARG ARG D . n D 1 9 MET 9 150 150 MET MET D . n D 1 10 ASP 10 151 151 ASP ASP D . n D 1 11 CYS 11 152 152 CYS CYS D . n D 1 12 PRO 12 153 153 PRO PRO D . n D 1 13 ALA 13 154 154 ALA ALA D . n D 1 14 LEU 14 155 155 LEU LEU D . n D 1 15 PRO 15 156 156 PRO PRO D . n D 1 16 PRO 16 157 157 PRO PRO D . n D 1 17 GLY 17 158 158 GLY GLY D . n D 1 18 TRP 18 159 159 TRP TRP D . n D 1 19 LYS 19 160 160 LYS LYS D . n D 1 20 LYS 20 161 161 LYS LYS D . n D 1 21 GLU 21 162 162 GLU GLU D . n D 1 22 GLU 22 163 163 GLU GLU D . n D 1 23 VAL 23 164 164 VAL VAL D . n D 1 24 ILE 24 165 165 ILE ILE D . n D 1 25 ARG 25 166 166 ARG ARG D . n D 1 26 LYS 26 167 167 LYS LYS D . n D 1 27 SER 27 168 168 SER SER D . n D 1 28 GLY 28 169 169 GLY GLY D . n D 1 29 LEU 29 170 170 LEU LEU D . n D 1 30 SER 30 171 171 SER SER D . n D 1 31 ALA 31 172 172 ALA ALA D . n D 1 32 GLY 32 173 173 GLY GLY D . n D 1 33 LYS 33 174 174 LYS LYS D . n D 1 34 SER 34 175 175 SER SER D . n D 1 35 ASP 35 176 176 ASP ASP D . n D 1 36 VAL 36 177 177 VAL VAL D . n D 1 37 TYR 37 178 178 TYR TYR D . n D 1 38 TYR 38 179 179 TYR TYR D . n D 1 39 PHE 39 180 180 PHE PHE D . n D 1 40 SER 40 181 181 SER SER D . n D 1 41 PRO 41 182 182 PRO PRO D . n D 1 42 SER 42 183 183 SER SER D . n D 1 43 GLY 43 184 184 GLY GLY D . n D 1 44 LYS 44 185 185 LYS LYS D . n D 1 45 LYS 45 186 186 LYS LYS D . n D 1 46 PHE 46 187 187 PHE PHE D . n D 1 47 ARG 47 188 188 ARG ARG D . n D 1 48 SER 48 189 189 SER SER D . n D 1 49 LYS 49 190 190 LYS LYS D . n D 1 50 PRO 50 191 191 PRO PRO D . n D 1 51 GLN 51 192 192 GLN GLN D . n D 1 52 LEU 52 193 193 LEU LEU D . n D 1 53 ALA 53 194 194 ALA ALA D . n D 1 54 ARG 54 195 195 ARG ARG D . n D 1 55 TYR 55 196 196 TYR TYR D . n D 1 56 LEU 56 197 197 LEU LEU D . n D 1 57 GLY 57 198 198 GLY GLY D . n D 1 58 ASN 58 199 199 ASN ASN D . n D 1 59 THR 59 200 200 THR THR D . n D 1 60 VAL 60 201 201 VAL VAL D . n D 1 61 ASP 61 202 202 ASP ASP D . n D 1 62 LEU 62 203 203 LEU LEU D . n D 1 63 SER 63 204 204 SER SER D . n D 1 64 SER 64 205 205 SER SER D . n D 1 65 PHE 65 206 206 PHE PHE D . n D 1 66 ASP 66 207 207 ASP ASP D . n D 1 67 PHE 67 208 208 PHE PHE D . n D 1 68 ARG 68 209 209 ARG ARG D . n D 1 69 THR 69 210 210 THR THR D . n D 1 70 GLY 70 211 211 GLY GLY D . n D 1 71 LYS 71 212 212 LYS LYS D . n D 1 72 MET 72 213 213 MET MET D . n D 1 73 MET 73 214 214 MET MET D . n D 1 74 PRO 74 215 ? ? ? D . n D 1 75 SER 75 216 ? ? ? D . n D 1 76 LYS 76 217 ? ? ? D . n D 1 77 LEU 77 218 ? ? ? D . n D 1 78 GLN 78 219 ? ? ? D . n D 1 79 LYS 79 220 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 1 301 1 SO4 SO4 A . F 5 UNX 1 302 1 UNX UNX A . G 5 UNX 1 303 2 UNX UNX A . H 5 UNX 1 304 3 UNX UNX A . I 5 UNX 1 305 5 UNX UNX A . J 5 UNX 1 306 6 UNX UNX A . K 5 UNX 1 307 7 UNX UNX A . L 5 UNX 1 308 8 UNX UNX A . M 5 UNX 1 309 14 UNX UNX A . N 5 UNX 1 310 16 UNX UNX A . O 5 UNX 1 311 17 UNX UNX A . P 5 UNX 1 312 18 UNX UNX A . Q 5 UNX 1 313 21 UNX UNX A . R 5 UNX 1 314 22 UNX UNX A . S 5 UNX 1 101 4 UNX UNX B . T 5 UNX 1 102 12 UNX UNX B . U 5 UNX 1 103 24 UNX UNX B . V 5 UNX 1 101 19 UNX UNX C . W 5 UNX 1 102 20 UNX UNX C . X 5 UNX 1 103 23 UNX UNX C . Y 5 UNX 1 104 25 UNX UNX C . Z 5 UNX 1 105 26 UNX UNX C . AA 6 GOL 1 106 1 GOL GOL C . BA 5 UNX 1 301 10 UNX UNX D . CA 5 UNX 1 302 11 UNX UNX D . DA 5 UNX 1 303 15 UNX UNX D . EA 7 HOH 1 401 18 HOH HOH A . EA 7 HOH 2 402 77 HOH HOH A . EA 7 HOH 3 403 8 HOH HOH A . EA 7 HOH 4 404 73 HOH HOH A . EA 7 HOH 5 405 75 HOH HOH A . EA 7 HOH 6 406 9 HOH HOH A . EA 7 HOH 7 407 46 HOH HOH A . EA 7 HOH 8 408 76 HOH HOH A . EA 7 HOH 9 409 17 HOH HOH A . EA 7 HOH 10 410 67 HOH HOH A . EA 7 HOH 11 411 74 HOH HOH A . EA 7 HOH 12 412 11 HOH HOH A . EA 7 HOH 13 413 39 HOH HOH A . EA 7 HOH 14 414 58 HOH HOH A . EA 7 HOH 15 415 79 HOH HOH A . EA 7 HOH 16 416 72 HOH HOH A . FA 7 HOH 1 201 35 HOH HOH B . FA 7 HOH 2 202 2 HOH HOH B . FA 7 HOH 3 203 5 HOH HOH B . FA 7 HOH 4 204 71 HOH HOH B . FA 7 HOH 5 205 16 HOH HOH B . FA 7 HOH 6 206 24 HOH HOH B . FA 7 HOH 7 207 69 HOH HOH B . FA 7 HOH 8 208 65 HOH HOH B . FA 7 HOH 9 209 70 HOH HOH B . GA 7 HOH 1 201 27 HOH HOH C . GA 7 HOH 2 202 57 HOH HOH C . GA 7 HOH 3 203 7 HOH HOH C . GA 7 HOH 4 204 26 HOH HOH C . GA 7 HOH 5 205 15 HOH HOH C . GA 7 HOH 6 206 66 HOH HOH C . HA 7 HOH 1 401 68 HOH HOH D . HA 7 HOH 2 402 41 HOH HOH D . HA 7 HOH 3 403 28 HOH HOH D . HA 7 HOH 4 404 13 HOH HOH D . HA 7 HOH 5 405 40 HOH HOH D . HA 7 HOH 6 406 43 HOH HOH D . HA 7 HOH 7 407 61 HOH HOH D . HA 7 HOH 8 408 60 HOH HOH D . HA 7 HOH 9 409 78 HOH HOH D . HA 7 HOH 10 410 12 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 148 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 148 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 148 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 148 ? NZ ? A LYS 7 NZ 5 1 Y 1 A LYS 161 ? NZ ? A LYS 20 NZ 6 1 Y 1 A LYS 167 ? CD ? A LYS 26 CD 7 1 Y 1 A LYS 167 ? CE ? A LYS 26 CE 8 1 Y 1 A LYS 167 ? NZ ? A LYS 26 NZ 9 1 Y 1 A SER 171 ? OG ? A SER 30 OG 10 1 Y 1 A LYS 174 ? CD ? A LYS 33 CD 11 1 Y 1 A LYS 174 ? CE ? A LYS 33 CE 12 1 Y 1 A LYS 174 ? NZ ? A LYS 33 NZ 13 1 Y 1 A ARG 195 ? CD ? A ARG 54 CD 14 1 Y 1 A ARG 195 ? NE ? A ARG 54 NE 15 1 Y 1 A ARG 195 ? CZ ? A ARG 54 CZ 16 1 Y 1 A ARG 195 ? NH1 ? A ARG 54 NH1 17 1 Y 1 A ARG 195 ? NH2 ? A ARG 54 NH2 18 1 Y 1 A LYS 212 ? CD ? A LYS 71 CD 19 1 Y 1 A LYS 212 ? CE ? A LYS 71 CE 20 1 Y 1 A LYS 212 ? NZ ? A LYS 71 NZ 21 1 Y 1 A MET 214 ? SD ? A MET 73 SD 22 1 Y 1 A MET 214 ? CE ? A MET 73 CE 23 1 Y 1 A PRO 215 ? CA ? A PRO 74 CA 24 1 Y 1 A PRO 215 ? C ? A PRO 74 C 25 1 Y 1 A PRO 215 ? O ? A PRO 74 O 26 1 Y 1 A PRO 215 ? CB ? A PRO 74 CB 27 1 Y 1 A PRO 215 ? CG ? A PRO 74 CG 28 1 Y 1 A PRO 215 ? CD ? A PRO 74 CD 29 1 Y 1 D MET 150 ? CG ? D MET 9 CG 30 1 Y 1 D MET 150 ? SD ? D MET 9 SD 31 1 Y 1 D MET 150 ? CE ? D MET 9 CE 32 1 Y 1 D ASP 151 ? CG ? D ASP 10 CG 33 1 Y 1 D ASP 151 ? OD1 ? D ASP 10 OD1 34 1 Y 1 D ASP 151 ? OD2 ? D ASP 10 OD2 35 1 Y 1 D LYS 160 ? CG ? D LYS 19 CG 36 1 Y 1 D LYS 160 ? CD ? D LYS 19 CD 37 1 Y 1 D LYS 160 ? CE ? D LYS 19 CE 38 1 Y 1 D LYS 160 ? NZ ? D LYS 19 NZ 39 1 Y 1 D LYS 167 ? CD ? D LYS 26 CD 40 1 Y 1 D LYS 167 ? CE ? D LYS 26 CE 41 1 Y 1 D LYS 167 ? NZ ? D LYS 26 NZ 42 1 Y 1 D LYS 174 ? CE ? D LYS 33 CE 43 1 Y 1 D LYS 174 ? NZ ? D LYS 33 NZ 44 1 Y 1 D SER 183 ? OG ? D SER 42 OG 45 1 Y 1 D LYS 185 ? CG ? D LYS 44 CG 46 1 Y 1 D LYS 185 ? CD ? D LYS 44 CD 47 1 Y 1 D LYS 185 ? CE ? D LYS 44 CE 48 1 Y 1 D LYS 185 ? NZ ? D LYS 44 NZ 49 1 Y 1 D LYS 186 ? CG ? D LYS 45 CG 50 1 Y 1 D LYS 186 ? CD ? D LYS 45 CD 51 1 Y 1 D LYS 186 ? CE ? D LYS 45 CE 52 1 Y 1 D LYS 186 ? NZ ? D LYS 45 NZ 53 1 Y 1 D ARG 195 ? CG ? D ARG 54 CG 54 1 Y 1 D ARG 195 ? CD ? D ARG 54 CD 55 1 Y 1 D ARG 195 ? NE ? D ARG 54 NE 56 1 Y 1 D ARG 195 ? CZ ? D ARG 54 CZ 57 1 Y 1 D ARG 195 ? NH1 ? D ARG 54 NH1 58 1 Y 1 D ARG 195 ? NH2 ? D ARG 54 NH2 59 1 Y 1 D ASN 199 ? CG ? D ASN 58 CG 60 1 Y 1 D ASN 199 ? OD1 ? D ASN 58 OD1 61 1 Y 1 D ASN 199 ? ND2 ? D ASN 58 ND2 62 1 Y 1 D THR 200 ? OG1 ? D THR 59 OG1 63 1 Y 1 D THR 200 ? CG2 ? D THR 59 CG2 64 1 Y 1 D LYS 212 ? CD ? D LYS 71 CD 65 1 Y 1 D LYS 212 ? CE ? D LYS 71 CE 66 1 Y 1 D LYS 212 ? NZ ? D LYS 71 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 108.250 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6C1T _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.473 _cell.length_a_esd ? _cell.length_b 36.933 _cell.length_b_esd ? _cell.length_c 104.076 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C1T _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '27% PEG-3350, 0.1 M Bis-Tris, 0.15 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6C1T _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.840 _reflns.d_resolution_low 49.420 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22367 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.200 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.063 _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 71924 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.840 1.880 ? ? 3705 ? ? ? 1236 91.300 ? ? ? ? 1.244 ? ? ? ? ? ? ? ? 3.000 ? ? ? 0.700 1.501 0.828 ? 1 1 0.340 ? 9.030 49.420 ? ? 636 ? ? ? 217 99.500 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 2.900 ? ? ? 27.400 0.037 0.020 ? 2 1 0.998 ? # _refine.aniso_B[1][1] -0.1300 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0600 _refine.aniso_B[2][2] 0.0100 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.1300 _refine.B_iso_max 103.510 _refine.B_iso_mean 49.5090 _refine.B_iso_min 31.620 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9510 _refine.details ;The identity of the 'sulfate' near Ser-183 is unclear. Similar density was also observed in another MBD2-DNA complex crystal where the crystallization buffer did not include sulfate. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C1T _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8400 _refine.ls_d_res_low 49.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21271 _refine.ls_number_reflns_R_free 1095 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.9600 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2153 _refine.ls_R_factor_R_free 0.2468 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2137 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'currently unpublished model of MBD2-DNA complex' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1290 _refine.pdbx_overall_ESU_R_Free 0.1260 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.9950 _refine.overall_SU_ML 0.1140 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8400 _refine_hist.d_res_low 49.0000 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 1559 _refine_hist.pdbx_number_residues_total 158 _refine_hist.pdbx_B_iso_mean_ligand 46.16 _refine_hist.pdbx_B_iso_mean_solvent 44.94 _refine_hist.pdbx_number_atoms_protein 996 _refine_hist.pdbx_number_atoms_nucleic_acid 487 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.017 1576 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1195 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.758 1.701 2229 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.182 3.000 2771 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.071 5.000 131 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 29.368 21.579 38 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.697 15.000 157 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 20.662 15.000 8 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.099 0.200 216 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.021 1434 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 346 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.375 2.957 531 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.376 2.953 530 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.027 4.418 661 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8440 _refine_ls_shell.d_res_low 1.8920 _refine_ls_shell.number_reflns_all 1510 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_R_work 1428 _refine_ls_shell.percent_reflns_obs 92.8100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3680 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3360 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6C1T _struct.title 'MBD2 in complex with a partially methylated DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C1T _struct_keywords.text 'MBD, DNA-binding, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 5 ? R N N 5 ? S N N 5 ? T N N 5 ? U N N 5 ? V N N 5 ? W N N 5 ? X N N 5 ? Y N N 5 ? Z N N 5 ? AA N N 6 ? BA N N 5 ? CA N N 5 ? DA N N 5 ? EA N N 7 ? FA N N 7 ? GA N N 7 ? HA N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MBD2_HUMAN Q9UBB5 ? 1 ATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQK 143 2 PDB 6C1T 6C1T ? 2 ? 1 3 PDB 6C1T 6C1T ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C1T A 2 ? 79 ? Q9UBB5 143 ? 220 ? 143 220 2 2 6C1T B 1 ? 12 ? 6C1T 1 ? 12 ? 1 12 3 3 6C1T C 1 ? 12 ? 6C1T 1 ? 12 ? 1 12 4 1 6C1T D 2 ? 79 ? Q9UBB5 143 ? 220 ? 143 220 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6C1T GLY A 1 ? UNP Q9UBB5 ? ? 'expression tag' 142 1 4 6C1T GLY D 1 ? UNP Q9UBB5 ? ? 'expression tag' 142 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4890 ? 1 MORE -38 ? 1 'SSA (A^2)' 10850 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details 'see PDB entry 2ky8' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 48 ? GLY A 57 ? SER A 189 GLY A 198 1 ? 10 HELX_P HELX_P2 AA2 ASN A 58 ? VAL A 60 ? ASN A 199 VAL A 201 5 ? 3 HELX_P HELX_P3 AA3 SER D 48 ? GLY D 57 ? SER D 189 GLY D 198 1 ? 10 HELX_P HELX_P4 AA4 ASN D 58 ? VAL D 60 ? ASN D 199 VAL D 201 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 5 "O3'" ? ? ? 1_555 B 5CM 6 P ? ? B DA 5 B 5CM 6 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale2 covale both ? B 5CM 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B 5CM 6 B DA 7 1_555 ? ? ? ? ? ? ? 1.592 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 4 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 4 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B 5CM 6 N3 ? ? ? 1_555 C DG 7 N1 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B 5CM 6 N4 ? ? ? 1_555 C DG 7 O6 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B 5CM 6 O2 ? ? ? 1_555 C DG 7 N2 ? ? B 5CM 6 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 5 N1 ? ? B DC 8 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 5 O6 ? ? B DC 8 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 5 N2 ? ? B DC 8 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 9 ? ASP A 10 ? MET A 150 ASP A 151 AA1 2 LYS A 19 ? ILE A 24 ? LYS A 160 ILE A 165 AA1 3 SER A 34 ? PHE A 39 ? SER A 175 PHE A 180 AA1 4 LYS A 45 ? PHE A 46 ? LYS A 186 PHE A 187 AA2 1 PHE A 65 ? ASP A 66 ? PHE A 206 ASP A 207 AA2 2 LYS A 71 ? MET A 72 ? LYS A 212 MET A 213 AA3 1 MET D 9 ? ASP D 10 ? MET D 150 ASP D 151 AA3 2 LYS D 19 ? ILE D 24 ? LYS D 160 ILE D 165 AA3 3 SER D 34 ? PHE D 39 ? SER D 175 PHE D 180 AA3 4 LYS D 45 ? PHE D 46 ? LYS D 186 PHE D 187 AA4 1 PHE D 65 ? ASP D 66 ? PHE D 206 ASP D 207 AA4 2 LYS D 71 ? MET D 72 ? LYS D 212 MET D 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N MET A 9 ? N MET A 150 O LYS A 20 ? O LYS A 161 AA1 2 3 N GLU A 21 ? N GLU A 162 O TYR A 37 ? O TYR A 178 AA1 3 4 N TYR A 38 ? N TYR A 179 O PHE A 46 ? O PHE A 187 AA2 1 2 N ASP A 66 ? N ASP A 207 O LYS A 71 ? O LYS A 212 AA3 1 2 N MET D 9 ? N MET D 150 O LYS D 20 ? O LYS D 161 AA3 2 3 N GLU D 21 ? N GLU D 162 O TYR D 37 ? O TYR D 178 AA3 3 4 N TYR D 38 ? N TYR D 179 O PHE D 46 ? O PHE D 187 AA4 1 2 N ASP D 66 ? N ASP D 207 O LYS D 71 ? O LYS D 212 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 5 'binding site for residue SO4 A 301' AC2 Software C GOL 106 ? 8 'binding site for residue GOL C 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 40 ? SER A 181 . ? 1_555 ? 2 AC1 5 PRO A 41 ? PRO A 182 . ? 1_555 ? 3 AC1 5 SER A 42 ? SER A 183 . ? 1_555 ? 4 AC1 5 LYS A 44 ? LYS A 185 . ? 1_555 ? 5 AC1 5 TYR A 55 ? TYR A 196 . ? 1_555 ? 6 AC2 8 DC C 1 ? DC C 1 . ? 1_555 ? 7 AC2 8 DG C 11 ? DG C 11 . ? 3_555 ? 8 AC2 8 HOH GA . ? HOH C 201 . ? 1_555 ? 9 AC2 8 HOH GA . ? HOH C 204 . ? 1_555 ? 10 AC2 8 ILE D 24 ? ILE D 165 . ? 1_555 ? 11 AC2 8 ARG D 25 ? ARG D 166 . ? 1_555 ? 12 AC2 8 LYS D 26 ? LYS D 167 . ? 1_555 ? 13 AC2 8 HOH HA . ? HOH D 402 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B DA 5 ? ? P B DA 5 ? ? OP2 B DA 5 ? ? 95.89 105.70 -9.81 0.90 N 2 1 "O5'" B DC 8 ? ? P B DC 8 ? ? OP2 B DC 8 ? ? 100.12 105.70 -5.58 0.90 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 9 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -15.1745 26.9201 108.8401 0.1818 0.0948 0.0158 -0.0658 -0.0001 -0.0019 2.8517 3.7358 6.3125 -0.9724 1.3119 -1.2599 0.0445 0.0849 -0.1294 0.0091 -0.2085 0.0972 -0.2683 0.3120 -0.0897 'X-RAY DIFFRACTION' 2 ? refined -15.9714 32.1378 124.1032 0.0940 0.1452 0.0586 -0.0233 0.0348 -0.0115 8.0348 3.9760 1.8834 4.0273 0.9462 -0.3218 -0.1763 0.0971 0.0792 -0.1470 -0.3687 -0.0461 -0.1475 0.0775 -0.1042 'X-RAY DIFFRACTION' 3 ? refined -16.1925 33.4383 123.3795 0.1319 0.1569 0.0091 -0.0570 0.0013 -0.0013 6.7615 3.8020 0.7873 3.9007 0.8079 -0.1614 -0.0883 0.0538 0.0345 -0.1743 0.2003 0.1574 -0.0173 -0.0071 -0.1591 'X-RAY DIFFRACTION' 4 ? refined -6.0204 43.8811 138.4985 0.2923 0.5024 0.1006 -0.0733 -0.0502 -0.0461 2.2468 5.3269 7.1232 0.0718 -1.6750 -2.9222 -0.0129 -0.0727 0.0857 -0.8720 0.2677 -0.0660 0.8714 -0.3416 0.2516 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 148 A 215 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 12 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 12 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 149 D 214 ? ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 142 ? A GLY 1 2 1 Y 1 A ALA 143 ? A ALA 2 3 1 Y 1 A THR 144 ? A THR 3 4 1 Y 1 A GLU 145 ? A GLU 4 5 1 Y 1 A SER 146 ? A SER 5 6 1 Y 1 A GLY 147 ? A GLY 6 7 1 Y 1 A SER 216 ? A SER 75 8 1 Y 1 A LYS 217 ? A LYS 76 9 1 Y 1 A LEU 218 ? A LEU 77 10 1 Y 1 A GLN 219 ? A GLN 78 11 1 Y 1 A LYS 220 ? A LYS 79 12 1 Y 1 D GLY 142 ? D GLY 1 13 1 Y 1 D ALA 143 ? D ALA 2 14 1 Y 1 D THR 144 ? D THR 3 15 1 Y 1 D GLU 145 ? D GLU 4 16 1 Y 1 D SER 146 ? D SER 5 17 1 Y 1 D GLY 147 ? D GLY 6 18 1 Y 1 D LYS 148 ? D LYS 7 19 1 Y 1 D PRO 215 ? D PRO 74 20 1 Y 1 D SER 216 ? D SER 75 21 1 Y 1 D LYS 217 ? D LYS 76 22 1 Y 1 D LEU 218 ? D LEU 77 23 1 Y 1 D GLN 219 ? D GLN 78 24 1 Y 1 D LYS 220 ? D LYS 79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 GOL C1 C N N 317 GOL O1 O N N 318 GOL C2 C N N 319 GOL O2 O N N 320 GOL C3 C N N 321 GOL O3 O N N 322 GOL H11 H N N 323 GOL H12 H N N 324 GOL HO1 H N N 325 GOL H2 H N N 326 GOL HO2 H N N 327 GOL H31 H N N 328 GOL H32 H N N 329 GOL HO3 H N N 330 HOH O O N N 331 HOH H1 H N N 332 HOH H2 H N N 333 ILE N N N N 334 ILE CA C N S 335 ILE C C N N 336 ILE O O N N 337 ILE CB C N S 338 ILE CG1 C N N 339 ILE CG2 C N N 340 ILE CD1 C N N 341 ILE OXT O N N 342 ILE H H N N 343 ILE H2 H N N 344 ILE HA H N N 345 ILE HB H N N 346 ILE HG12 H N N 347 ILE HG13 H N N 348 ILE HG21 H N N 349 ILE HG22 H N N 350 ILE HG23 H N N 351 ILE HD11 H N N 352 ILE HD12 H N N 353 ILE HD13 H N N 354 ILE HXT H N N 355 LEU N N N N 356 LEU CA C N S 357 LEU C C N N 358 LEU O O N N 359 LEU CB C N N 360 LEU CG C N N 361 LEU CD1 C N N 362 LEU CD2 C N N 363 LEU OXT O N N 364 LEU H H N N 365 LEU H2 H N N 366 LEU HA H N N 367 LEU HB2 H N N 368 LEU HB3 H N N 369 LEU HG H N N 370 LEU HD11 H N N 371 LEU HD12 H N N 372 LEU HD13 H N N 373 LEU HD21 H N N 374 LEU HD22 H N N 375 LEU HD23 H N N 376 LEU HXT H N N 377 LYS N N N N 378 LYS CA C N S 379 LYS C C N N 380 LYS O O N N 381 LYS CB C N N 382 LYS CG C N N 383 LYS CD C N N 384 LYS CE C N N 385 LYS NZ N N N 386 LYS OXT O N N 387 LYS H H N N 388 LYS H2 H N N 389 LYS HA H N N 390 LYS HB2 H N N 391 LYS HB3 H N N 392 LYS HG2 H N N 393 LYS HG3 H N N 394 LYS HD2 H N N 395 LYS HD3 H N N 396 LYS HE2 H N N 397 LYS HE3 H N N 398 LYS HZ1 H N N 399 LYS HZ2 H N N 400 LYS HZ3 H N N 401 LYS HXT H N N 402 MET N N N N 403 MET CA C N S 404 MET C C N N 405 MET O O N N 406 MET CB C N N 407 MET CG C N N 408 MET SD S N N 409 MET CE C N N 410 MET OXT O N N 411 MET H H N N 412 MET H2 H N N 413 MET HA H N N 414 MET HB2 H N N 415 MET HB3 H N N 416 MET HG2 H N N 417 MET HG3 H N N 418 MET HE1 H N N 419 MET HE2 H N N 420 MET HE3 H N N 421 MET HXT H N N 422 PHE N N N N 423 PHE CA C N S 424 PHE C C N N 425 PHE O O N N 426 PHE CB C N N 427 PHE CG C Y N 428 PHE CD1 C Y N 429 PHE CD2 C Y N 430 PHE CE1 C Y N 431 PHE CE2 C Y N 432 PHE CZ C Y N 433 PHE OXT O N N 434 PHE H H N N 435 PHE H2 H N N 436 PHE HA H N N 437 PHE HB2 H N N 438 PHE HB3 H N N 439 PHE HD1 H N N 440 PHE HD2 H N N 441 PHE HE1 H N N 442 PHE HE2 H N N 443 PHE HZ H N N 444 PHE HXT H N N 445 PRO N N N N 446 PRO CA C N S 447 PRO C C N N 448 PRO O O N N 449 PRO CB C N N 450 PRO CG C N N 451 PRO CD C N N 452 PRO OXT O N N 453 PRO H H N N 454 PRO HA H N N 455 PRO HB2 H N N 456 PRO HB3 H N N 457 PRO HG2 H N N 458 PRO HG3 H N N 459 PRO HD2 H N N 460 PRO HD3 H N N 461 PRO HXT H N N 462 SER N N N N 463 SER CA C N S 464 SER C C N N 465 SER O O N N 466 SER CB C N N 467 SER OG O N N 468 SER OXT O N N 469 SER H H N N 470 SER H2 H N N 471 SER HA H N N 472 SER HB2 H N N 473 SER HB3 H N N 474 SER HG H N N 475 SER HXT H N N 476 SO4 S S N N 477 SO4 O1 O N N 478 SO4 O2 O N N 479 SO4 O3 O N N 480 SO4 O4 O N N 481 THR N N N N 482 THR CA C N S 483 THR C C N N 484 THR O O N N 485 THR CB C N R 486 THR OG1 O N N 487 THR CG2 C N N 488 THR OXT O N N 489 THR H H N N 490 THR H2 H N N 491 THR HA H N N 492 THR HB H N N 493 THR HG1 H N N 494 THR HG21 H N N 495 THR HG22 H N N 496 THR HG23 H N N 497 THR HXT H N N 498 TRP N N N N 499 TRP CA C N S 500 TRP C C N N 501 TRP O O N N 502 TRP CB C N N 503 TRP CG C Y N 504 TRP CD1 C Y N 505 TRP CD2 C Y N 506 TRP NE1 N Y N 507 TRP CE2 C Y N 508 TRP CE3 C Y N 509 TRP CZ2 C Y N 510 TRP CZ3 C Y N 511 TRP CH2 C Y N 512 TRP OXT O N N 513 TRP H H N N 514 TRP H2 H N N 515 TRP HA H N N 516 TRP HB2 H N N 517 TRP HB3 H N N 518 TRP HD1 H N N 519 TRP HE1 H N N 520 TRP HE3 H N N 521 TRP HZ2 H N N 522 TRP HZ3 H N N 523 TRP HH2 H N N 524 TRP HXT H N N 525 TYR N N N N 526 TYR CA C N S 527 TYR C C N N 528 TYR O O N N 529 TYR CB C N N 530 TYR CG C Y N 531 TYR CD1 C Y N 532 TYR CD2 C Y N 533 TYR CE1 C Y N 534 TYR CE2 C Y N 535 TYR CZ C Y N 536 TYR OH O N N 537 TYR OXT O N N 538 TYR H H N N 539 TYR H2 H N N 540 TYR HA H N N 541 TYR HB2 H N N 542 TYR HB3 H N N 543 TYR HD1 H N N 544 TYR HD2 H N N 545 TYR HE1 H N N 546 TYR HE2 H N N 547 TYR HH H N N 548 TYR HXT H N N 549 VAL N N N N 550 VAL CA C N S 551 VAL C C N N 552 VAL O O N N 553 VAL CB C N N 554 VAL CG1 C N N 555 VAL CG2 C N N 556 VAL OXT O N N 557 VAL H H N N 558 VAL H2 H N N 559 VAL HA H N N 560 VAL HB H N N 561 VAL HG11 H N N 562 VAL HG12 H N N 563 VAL HG13 H N N 564 VAL HG21 H N N 565 VAL HG22 H N N 566 VAL HG23 H N N 567 VAL HXT H N N 568 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 GOL C1 O1 sing N N 316 GOL C1 C2 sing N N 317 GOL C1 H11 sing N N 318 GOL C1 H12 sing N N 319 GOL O1 HO1 sing N N 320 GOL C2 O2 sing N N 321 GOL C2 C3 sing N N 322 GOL C2 H2 sing N N 323 GOL O2 HO2 sing N N 324 GOL C3 O3 sing N N 325 GOL C3 H31 sing N N 326 GOL C3 H32 sing N N 327 GOL O3 HO3 sing N N 328 HOH O H1 sing N N 329 HOH O H2 sing N N 330 ILE N CA sing N N 331 ILE N H sing N N 332 ILE N H2 sing N N 333 ILE CA C sing N N 334 ILE CA CB sing N N 335 ILE CA HA sing N N 336 ILE C O doub N N 337 ILE C OXT sing N N 338 ILE CB CG1 sing N N 339 ILE CB CG2 sing N N 340 ILE CB HB sing N N 341 ILE CG1 CD1 sing N N 342 ILE CG1 HG12 sing N N 343 ILE CG1 HG13 sing N N 344 ILE CG2 HG21 sing N N 345 ILE CG2 HG22 sing N N 346 ILE CG2 HG23 sing N N 347 ILE CD1 HD11 sing N N 348 ILE CD1 HD12 sing N N 349 ILE CD1 HD13 sing N N 350 ILE OXT HXT sing N N 351 LEU N CA sing N N 352 LEU N H sing N N 353 LEU N H2 sing N N 354 LEU CA C sing N N 355 LEU CA CB sing N N 356 LEU CA HA sing N N 357 LEU C O doub N N 358 LEU C OXT sing N N 359 LEU CB CG sing N N 360 LEU CB HB2 sing N N 361 LEU CB HB3 sing N N 362 LEU CG CD1 sing N N 363 LEU CG CD2 sing N N 364 LEU CG HG sing N N 365 LEU CD1 HD11 sing N N 366 LEU CD1 HD12 sing N N 367 LEU CD1 HD13 sing N N 368 LEU CD2 HD21 sing N N 369 LEU CD2 HD22 sing N N 370 LEU CD2 HD23 sing N N 371 LEU OXT HXT sing N N 372 LYS N CA sing N N 373 LYS N H sing N N 374 LYS N H2 sing N N 375 LYS CA C sing N N 376 LYS CA CB sing N N 377 LYS CA HA sing N N 378 LYS C O doub N N 379 LYS C OXT sing N N 380 LYS CB CG sing N N 381 LYS CB HB2 sing N N 382 LYS CB HB3 sing N N 383 LYS CG CD sing N N 384 LYS CG HG2 sing N N 385 LYS CG HG3 sing N N 386 LYS CD CE sing N N 387 LYS CD HD2 sing N N 388 LYS CD HD3 sing N N 389 LYS CE NZ sing N N 390 LYS CE HE2 sing N N 391 LYS CE HE3 sing N N 392 LYS NZ HZ1 sing N N 393 LYS NZ HZ2 sing N N 394 LYS NZ HZ3 sing N N 395 LYS OXT HXT sing N N 396 MET N CA sing N N 397 MET N H sing N N 398 MET N H2 sing N N 399 MET CA C sing N N 400 MET CA CB sing N N 401 MET CA HA sing N N 402 MET C O doub N N 403 MET C OXT sing N N 404 MET CB CG sing N N 405 MET CB HB2 sing N N 406 MET CB HB3 sing N N 407 MET CG SD sing N N 408 MET CG HG2 sing N N 409 MET CG HG3 sing N N 410 MET SD CE sing N N 411 MET CE HE1 sing N N 412 MET CE HE2 sing N N 413 MET CE HE3 sing N N 414 MET OXT HXT sing N N 415 PHE N CA sing N N 416 PHE N H sing N N 417 PHE N H2 sing N N 418 PHE CA C sing N N 419 PHE CA CB sing N N 420 PHE CA HA sing N N 421 PHE C O doub N N 422 PHE C OXT sing N N 423 PHE CB CG sing N N 424 PHE CB HB2 sing N N 425 PHE CB HB3 sing N N 426 PHE CG CD1 doub Y N 427 PHE CG CD2 sing Y N 428 PHE CD1 CE1 sing Y N 429 PHE CD1 HD1 sing N N 430 PHE CD2 CE2 doub Y N 431 PHE CD2 HD2 sing N N 432 PHE CE1 CZ doub Y N 433 PHE CE1 HE1 sing N N 434 PHE CE2 CZ sing Y N 435 PHE CE2 HE2 sing N N 436 PHE CZ HZ sing N N 437 PHE OXT HXT sing N N 438 PRO N CA sing N N 439 PRO N CD sing N N 440 PRO N H sing N N 441 PRO CA C sing N N 442 PRO CA CB sing N N 443 PRO CA HA sing N N 444 PRO C O doub N N 445 PRO C OXT sing N N 446 PRO CB CG sing N N 447 PRO CB HB2 sing N N 448 PRO CB HB3 sing N N 449 PRO CG CD sing N N 450 PRO CG HG2 sing N N 451 PRO CG HG3 sing N N 452 PRO CD HD2 sing N N 453 PRO CD HD3 sing N N 454 PRO OXT HXT sing N N 455 SER N CA sing N N 456 SER N H sing N N 457 SER N H2 sing N N 458 SER CA C sing N N 459 SER CA CB sing N N 460 SER CA HA sing N N 461 SER C O doub N N 462 SER C OXT sing N N 463 SER CB OG sing N N 464 SER CB HB2 sing N N 465 SER CB HB3 sing N N 466 SER OG HG sing N N 467 SER OXT HXT sing N N 468 SO4 S O1 doub N N 469 SO4 S O2 doub N N 470 SO4 S O3 sing N N 471 SO4 S O4 sing N N 472 THR N CA sing N N 473 THR N H sing N N 474 THR N H2 sing N N 475 THR CA C sing N N 476 THR CA CB sing N N 477 THR CA HA sing N N 478 THR C O doub N N 479 THR C OXT sing N N 480 THR CB OG1 sing N N 481 THR CB CG2 sing N N 482 THR CB HB sing N N 483 THR OG1 HG1 sing N N 484 THR CG2 HG21 sing N N 485 THR CG2 HG22 sing N N 486 THR CG2 HG23 sing N N 487 THR OXT HXT sing N N 488 TRP N CA sing N N 489 TRP N H sing N N 490 TRP N H2 sing N N 491 TRP CA C sing N N 492 TRP CA CB sing N N 493 TRP CA HA sing N N 494 TRP C O doub N N 495 TRP C OXT sing N N 496 TRP CB CG sing N N 497 TRP CB HB2 sing N N 498 TRP CB HB3 sing N N 499 TRP CG CD1 doub Y N 500 TRP CG CD2 sing Y N 501 TRP CD1 NE1 sing Y N 502 TRP CD1 HD1 sing N N 503 TRP CD2 CE2 doub Y N 504 TRP CD2 CE3 sing Y N 505 TRP NE1 CE2 sing Y N 506 TRP NE1 HE1 sing N N 507 TRP CE2 CZ2 sing Y N 508 TRP CE3 CZ3 doub Y N 509 TRP CE3 HE3 sing N N 510 TRP CZ2 CH2 doub Y N 511 TRP CZ2 HZ2 sing N N 512 TRP CZ3 CH2 sing Y N 513 TRP CZ3 HZ3 sing N N 514 TRP CH2 HH2 sing N N 515 TRP OXT HXT sing N N 516 TYR N CA sing N N 517 TYR N H sing N N 518 TYR N H2 sing N N 519 TYR CA C sing N N 520 TYR CA CB sing N N 521 TYR CA HA sing N N 522 TYR C O doub N N 523 TYR C OXT sing N N 524 TYR CB CG sing N N 525 TYR CB HB2 sing N N 526 TYR CB HB3 sing N N 527 TYR CG CD1 doub Y N 528 TYR CG CD2 sing Y N 529 TYR CD1 CE1 sing Y N 530 TYR CD1 HD1 sing N N 531 TYR CD2 CE2 doub Y N 532 TYR CD2 HD2 sing N N 533 TYR CE1 CZ doub Y N 534 TYR CE1 HE1 sing N N 535 TYR CE2 CZ sing Y N 536 TYR CE2 HE2 sing N N 537 TYR CZ OH sing N N 538 TYR OH HH sing N N 539 TYR OXT HXT sing N N 540 VAL N CA sing N N 541 VAL N H sing N N 542 VAL N H2 sing N N 543 VAL CA C sing N N 544 VAL CA CB sing N N 545 VAL CA HA sing N N 546 VAL C O doub N N 547 VAL C OXT sing N N 548 VAL CB CG1 sing N N 549 VAL CB CG2 sing N N 550 VAL CB HB sing N N 551 VAL CG1 HG11 sing N N 552 VAL CG1 HG12 sing N N 553 VAL CG1 HG13 sing N N 554 VAL CG2 HG21 sing N N 555 VAL CG2 HG22 sing N N 556 VAL CG2 HG23 sing N N 557 VAL OXT HXT sing N N 558 # _ndb_struct_conf_na.entry_id 6C1T _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 -0.387 -0.054 -0.133 -5.516 -5.770 1.201 1 B_DG1:DC12_C B 1 ? C 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 -0.006 -0.138 0.122 -0.897 -6.620 -3.644 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.273 -0.171 0.339 -7.497 -10.670 -0.145 3 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DT 4 1_555 C DA 9 1_555 -0.068 -0.069 0.156 -5.763 -15.282 -1.036 4 B_DT4:DA9_C B 4 ? C 9 ? 20 1 1 B DA 5 1_555 C DT 8 1_555 -0.057 -0.216 -0.067 -4.006 -2.016 2.837 5 B_DA5:DT8_C B 5 ? C 8 ? 20 1 1 B 5CM 6 1_555 C DG 7 1_555 0.265 -0.074 -0.124 10.969 -3.824 0.334 6 B_5CM6:DG7_C B 6 ? C 7 ? 19 1 1 B DA 7 1_555 C DT 6 1_555 -0.105 -0.101 -0.065 1.886 -5.192 -2.617 7 B_DA7:DT6_C B 7 ? C 6 ? 20 1 1 B DC 8 1_555 C DG 5 1_555 0.180 -0.044 0.043 2.516 -11.350 -0.057 8 B_DC8:DG5_C B 8 ? C 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.122 -0.103 -0.054 -1.692 -17.773 -3.512 9 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.248 -0.158 0.158 -7.383 -6.047 0.416 10 B_DC10:DG3_C B 10 ? C 3 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 0.400 -0.199 0.035 1.550 -6.021 -1.207 11 B_DC11:DG2_C B 11 ? C 2 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 -0.246 -0.200 0.104 3.437 1.890 -2.243 12 B_DG12:DC1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DC 2 1_555 C DG 11 1_555 -0.760 -0.092 3.243 -2.387 -2.972 33.664 0.321 0.919 3.283 -5.110 4.105 33.873 1 BB_DG1DC2:DG11DC12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 0.431 0.046 3.445 0.390 0.254 40.777 0.036 -0.573 3.449 0.364 -0.559 40.779 2 BB_DC2DC3:DG10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DT 4 1_555 C DA 9 1_555 -0.715 0.372 3.274 1.426 1.559 32.404 0.393 1.528 3.255 2.790 -2.551 32.471 3 BB_DC3DT4:DA9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DT 4 1_555 C DA 9 1_555 B DA 5 1_555 C DT 8 1_555 1.448 1.196 3.332 2.927 -1.493 40.147 1.911 -1.763 3.380 -2.170 -4.255 40.275 4 BB_DT4DA5:DT8DA9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DA 5 1_555 C DT 8 1_555 B 5CM 6 1_555 C DG 7 1_555 -0.091 -0.128 2.964 0.664 4.820 23.668 -1.692 0.408 2.878 11.596 -1.598 24.156 5 BB_DA55CM6:DG7DT8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B 5CM 6 1_555 C DG 7 1_555 B DA 7 1_555 C DT 6 1_555 -0.214 0.128 3.565 0.559 0.218 43.053 0.151 0.352 3.563 0.297 -0.762 43.057 6 BB_5CM6DA7:DT6DG7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DA 7 1_555 C DT 6 1_555 B DC 8 1_555 C DG 5 1_555 0.267 -0.469 3.314 -0.960 -1.572 35.199 -0.538 -0.585 3.323 -2.598 1.587 35.245 7 BB_DA7DC8:DG5DT6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DC 8 1_555 C DG 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.693 0.007 3.336 2.401 4.660 35.492 -0.666 1.474 3.258 7.592 -3.912 35.865 8 BB_DC8DT9:DA4DG5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 1.048 1.540 3.477 -0.006 -0.308 43.103 2.128 -1.428 3.466 -0.419 0.008 43.104 9 BB_DT9DC10:DG3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DC 10 1_555 C DG 3 1_555 B DC 11 1_555 C DG 2 1_555 -0.105 0.766 3.166 0.323 3.906 26.591 0.659 0.308 3.241 8.433 -0.697 26.873 10 BB_DC10DC11:DG2DG3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DC 11 1_555 C DG 2 1_555 B DG 12 1_555 C DC 1 1_555 0.234 0.141 3.285 -0.666 0.455 38.335 0.158 -0.440 3.282 0.693 1.015 38.343 11 BB_DC11DG12:DC1DG2_CC B 11 ? C 2 ? B 12 ? C 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'currently unpublished model of MBD2-DNA complex' # _atom_sites.entry_id 6C1T _atom_sites.fract_transf_matrix[1][1] 0.013991 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004613 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027076 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010117 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S X # loop_