HEADER HYDROLASE 08-JAN-18 6C2C TITLE THE MOLECULAR BASIS FOR THE FUNCTIONAL EVOLUTION OF AN ORGANOPHOSPHATE TITLE 2 HYDROLYSING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROCOUMARIN HYDROLASE, ANCDHCH1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHATASE, DIRECTED EVOLUTION, METHYL-PARATHION HYDROLASE (MPH), KEYWDS 2 HYDROLASE, A XENOBIOTIC DEGRADING ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR N.-S.HONG,C.J.JACKSON,P.D.CARR,N.TOKURIKI,F.BAIER,G.YANG REVDAT 4 13-MAR-24 6C2C 1 JRNL LINK REVDAT 3 06-NOV-19 6C2C 1 JRNL REVDAT 2 23-JAN-19 6C2C 1 JRNL REVDAT 1 16-JAN-19 6C2C 0 JRNL AUTH G.YANG,D.W.ANDERSON,F.BAIER,E.DOHMEN,N.HONG,P.D.CARR, JRNL AUTH 2 S.C.L.KAMERLIN,C.J.JACKSON,E.BORNBERG-BAUER,N.TOKURIKI JRNL TITL HIGHER-ORDER EPISTASIS SHAPES THE FITNESS LANDSCAPE OF A JRNL TITL 2 XENOBIOTIC-DEGRADING ENZYME. JRNL REF NAT.CHEM.BIOL. V. 15 1120 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31636435 JRNL DOI 10.1038/S41589-019-0386-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.BAIER,N.-S.HONG,G.YANG,P.D.CARR,C.JACKSON,N.TOKURIKI, REMARK 1 AUTH 2 D.ANDERSON,E.DOHMAN,A.PABIS,E.BORNBERG-BAUER,C.L.KAMERLIN REMARK 1 TITL HIGHER-ORDER EPISTATIC NETWORKS UNDERLIE THE EVOLUTIONARY REMARK 1 TITL 2 FITNESS LANDSCAPE OF A XENOBIOTIC-DEGRADING ENZYME REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 78555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3839 - 4.8398 0.99 2952 159 0.1462 0.1390 REMARK 3 2 4.8398 - 3.8453 1.00 2870 147 0.1395 0.1717 REMARK 3 3 3.8453 - 3.3604 1.00 2822 154 0.1684 0.1900 REMARK 3 4 3.3604 - 3.0536 1.00 2790 167 0.1793 0.1981 REMARK 3 5 3.0536 - 2.8350 1.00 2794 155 0.1837 0.2193 REMARK 3 6 2.8350 - 2.6680 1.00 2772 150 0.1822 0.2195 REMARK 3 7 2.6680 - 2.5345 1.00 2764 161 0.1806 0.2275 REMARK 3 8 2.5345 - 2.4243 1.00 2752 153 0.1838 0.1794 REMARK 3 9 2.4243 - 2.3310 1.00 2775 115 0.1753 0.2146 REMARK 3 10 2.3310 - 2.2506 0.99 2750 144 0.1743 0.2594 REMARK 3 11 2.2506 - 2.1803 0.99 2728 143 0.1800 0.1827 REMARK 3 12 2.1803 - 2.1180 0.99 2768 144 0.1784 0.2061 REMARK 3 13 2.1180 - 2.0623 0.98 2687 126 0.1770 0.2071 REMARK 3 14 2.0623 - 2.0120 0.98 2714 153 0.1869 0.2099 REMARK 3 15 2.0120 - 1.9662 0.98 2721 140 0.1852 0.2717 REMARK 3 16 1.9662 - 1.9244 0.97 2646 136 0.1763 0.2311 REMARK 3 17 1.9244 - 1.8859 0.96 2670 124 0.1832 0.2021 REMARK 3 18 1.8859 - 1.8503 0.95 2594 130 0.1798 0.2351 REMARK 3 19 1.8503 - 1.8173 0.95 2623 125 0.1793 0.2218 REMARK 3 20 1.8173 - 1.7865 0.94 2576 148 0.1802 0.2145 REMARK 3 21 1.7865 - 1.7577 0.92 2505 141 0.1840 0.2092 REMARK 3 22 1.7577 - 1.7307 0.92 2509 138 0.1890 0.2556 REMARK 3 23 1.7307 - 1.7052 0.91 2485 155 0.1856 0.2385 REMARK 3 24 1.7052 - 1.6812 0.91 2517 129 0.1809 0.2298 REMARK 3 25 1.6812 - 1.6585 0.91 2467 127 0.1771 0.2389 REMARK 3 26 1.6585 - 1.6369 0.90 2457 139 0.1856 0.2340 REMARK 3 27 1.6369 - 1.6165 0.90 2466 114 0.1928 0.2120 REMARK 3 28 1.6165 - 1.5970 0.90 2416 148 0.2052 0.2634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4652 REMARK 3 ANGLE : 1.448 6333 REMARK 3 CHIRALITY : 0.103 705 REMARK 3 PLANARITY : 0.010 837 REMARK 3 DIHEDRAL : 18.503 1686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : XENOCS GENIX 3D CU HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.597 REMARK 200 RESOLUTION RANGE LOW (A) : 26.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02460 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.12550 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM ACETATE TERAHYDRATE, REMARK 280 20% PEG 3350, 10 MM TRIS/HCL AT PH 7.5, 50 MM NACL AND 0.1 MM REMARK 280 ZNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A -2 123.21 -36.65 REMARK 500 LYS A 8 -23.84 65.31 REMARK 500 ASP A 79 163.98 72.54 REMARK 500 THR A 80 14.58 -140.28 REMARK 500 ALA A 83 -135.67 57.82 REMARK 500 LEU A 90 -166.78 -112.78 REMARK 500 MET A 115 38.01 -91.35 REMARK 500 SER A 197 56.65 -147.40 REMARK 500 LYS B 8 -28.49 61.67 REMARK 500 ASP B 79 171.29 67.78 REMARK 500 ALA B 83 -136.17 54.50 REMARK 500 PHE B 86 47.68 -141.89 REMARK 500 LEU B 90 -165.84 -108.95 REMARK 500 MET B 115 41.14 -91.68 REMARK 500 LEU B 188 -66.30 -104.21 REMARK 500 SER B 197 52.23 -145.86 REMARK 500 ASP B 280 86.84 -151.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 766 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 767 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 88.9 REMARK 620 3 HIS A 200 NE2 91.7 87.2 REMARK 620 4 ASP A 221 OD2 86.0 174.8 94.1 REMARK 620 5 HOH A 517 O 107.1 99.0 160.2 81.4 REMARK 620 6 HOH A 652 O 169.2 92.0 77.6 93.2 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 HIS A 119 NE2 85.1 REMARK 620 3 ASP A 221 OD2 173.7 99.3 REMARK 620 4 HIS A 268 NE2 84.3 113.1 97.9 REMARK 620 5 HOH A 517 O 91.5 104.3 83.1 141.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 552 O REMARK 620 2 HOH A 575 O 86.4 REMARK 620 3 HOH B 646 O 93.4 93.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 515 O REMARK 620 2 HOH B 555 O 94.4 REMARK 620 3 HOH B 605 O 97.2 92.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 85.8 REMARK 620 3 HIS B 200 NE2 89.2 83.2 REMARK 620 4 ASP B 221 OD2 91.9 177.5 97.8 REMARK 620 5 HOH B 514 O 106.1 96.9 164.7 82.7 REMARK 620 6 HOH B 581 O 172.0 93.7 82.8 88.7 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 HIS B 119 NE2 86.1 REMARK 620 3 ASP B 221 OD2 168.8 102.5 REMARK 620 4 HIS B 268 NE2 83.8 113.6 99.0 REMARK 620 5 HOH B 514 O 92.2 103.5 78.9 142.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 404 DBREF 6C2C A -4 294 PDB 6C2C 6C2C -4 294 DBREF 6C2C B -4 294 PDB 6C2C 6C2C -4 294 SEQRES 1 A 299 GLY THR ILE GLY SER MET ALA ALA ALA PRO GLN VAL LYS SEQRES 2 A 299 THR GLN ALA PRO GLY PHE TYR ARG MET MET LEU GLY ASP SEQRES 3 A 299 PHE GLU VAL THR ALA LEU SER ASP GLY THR VAL ASP LEU SEQRES 4 A 299 PRO VAL ASP LYS LEU LEU ASN GLN PRO PRO ALA LYS THR SEQRES 5 A 299 GLN SER ALA LEU ALA LYS SER PHE LEU LYS ALA PRO LEU SEQRES 6 A 299 GLU THR SER VAL ASN ALA TYR LEU VAL ASN THR GLY SER SEQRES 7 A 299 LYS LEU VAL LEU VAL ASP THR GLY ALA ALA GLY LEU PHE SEQRES 8 A 299 GLY PRO THR LEU GLY LYS LEU ALA ALA ASN LEU LYS ALA SEQRES 9 A 299 ALA GLY TYR GLN PRO GLU GLN VAL ASP GLU ILE TYR ILE SEQRES 10 A 299 THR HIS MET HIS PRO ASP HIS VAL GLY GLY LEU MET ALA SEQRES 11 A 299 ASN GLU GLN ALA ALA PHE PRO ASN ALA VAL VAL ARG ALA SEQRES 12 A 299 ASP GLN LYS ASP ALA ASP PHE TRP LEU SER GLN ALA ASN SEQRES 13 A 299 LEU ASP LYS ALA PRO ASP ASP GLU LYS GLY PHE PHE GLN SEQRES 14 A 299 GLY ALA MET ALA SER LEU ASN PRO TYR VAL LYS ALA GLY SEQRES 15 A 299 LYS PHE LYS PRO PHE SER GLY ASN THR ASP LEU VAL PRO SEQRES 16 A 299 GLY ILE LYS ALA LEU ALA SER HIS GLY HIS THR PRO GLY SEQRES 17 A 299 HIS THR THR TYR VAL VAL GLU SER LYS GLY GLN LYS LEU SEQRES 18 A 299 VAL LEU LEU GLY ASP LEU ILE HIS VAL ALA ALA VAL GLN SEQRES 19 A 299 PHE ASP ASP PRO SER VAL THR ILE GLN PHE ASP SER ASP SEQRES 20 A 299 SER LYS ALA ALA ALA ALA GLU ARG LYS LYS ALA PHE ALA SEQRES 21 A 299 ASP ALA ALA LYS GLY GLY TYR LEU ILE GLY ALA ALA HIS SEQRES 22 A 299 LEU SER PHE PRO GLY ILE GLY HIS ILE ARG ALA ASP GLY SEQRES 23 A 299 LYS GLY TYR ARG PHE VAL PRO VAL ASN TYR SER VAL ALA SEQRES 1 B 299 GLY THR ILE GLY SER MET ALA ALA ALA PRO GLN VAL LYS SEQRES 2 B 299 THR GLN ALA PRO GLY PHE TYR ARG MET MET LEU GLY ASP SEQRES 3 B 299 PHE GLU VAL THR ALA LEU SER ASP GLY THR VAL ASP LEU SEQRES 4 B 299 PRO VAL ASP LYS LEU LEU ASN GLN PRO PRO ALA LYS THR SEQRES 5 B 299 GLN SER ALA LEU ALA LYS SER PHE LEU LYS ALA PRO LEU SEQRES 6 B 299 GLU THR SER VAL ASN ALA TYR LEU VAL ASN THR GLY SER SEQRES 7 B 299 LYS LEU VAL LEU VAL ASP THR GLY ALA ALA GLY LEU PHE SEQRES 8 B 299 GLY PRO THR LEU GLY LYS LEU ALA ALA ASN LEU LYS ALA SEQRES 9 B 299 ALA GLY TYR GLN PRO GLU GLN VAL ASP GLU ILE TYR ILE SEQRES 10 B 299 THR HIS MET HIS PRO ASP HIS VAL GLY GLY LEU MET ALA SEQRES 11 B 299 ASN GLU GLN ALA ALA PHE PRO ASN ALA VAL VAL ARG ALA SEQRES 12 B 299 ASP GLN LYS ASP ALA ASP PHE TRP LEU SER GLN ALA ASN SEQRES 13 B 299 LEU ASP LYS ALA PRO ASP ASP GLU LYS GLY PHE PHE GLN SEQRES 14 B 299 GLY ALA MET ALA SER LEU ASN PRO TYR VAL LYS ALA GLY SEQRES 15 B 299 LYS PHE LYS PRO PHE SER GLY ASN THR ASP LEU VAL PRO SEQRES 16 B 299 GLY ILE LYS ALA LEU ALA SER HIS GLY HIS THR PRO GLY SEQRES 17 B 299 HIS THR THR TYR VAL VAL GLU SER LYS GLY GLN LYS LEU SEQRES 18 B 299 VAL LEU LEU GLY ASP LEU ILE HIS VAL ALA ALA VAL GLN SEQRES 19 B 299 PHE ASP ASP PRO SER VAL THR ILE GLN PHE ASP SER ASP SEQRES 20 B 299 SER LYS ALA ALA ALA ALA GLU ARG LYS LYS ALA PHE ALA SEQRES 21 B 299 ASP ALA ALA LYS GLY GLY TYR LEU ILE GLY ALA ALA HIS SEQRES 22 B 299 LEU SER PHE PRO GLY ILE GLY HIS ILE ARG ALA ASP GLY SEQRES 23 B 299 LYS GLY TYR ARG PHE VAL PRO VAL ASN TYR SER VAL ALA HET ZN A 401 1 HET ZN A 402 1 HET MG A 403 1 HET PEG A 404 7 HET ZN B 401 1 HET ZN B 402 1 HET MG B 403 1 HET PEG B 404 7 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 11 HOH *543(H2 O) HELIX 1 AA1 PRO A 35 LEU A 40 1 6 HELIX 2 AA2 PRO A 43 SER A 54 1 12 HELIX 3 AA3 LYS A 92 ALA A 100 1 9 HELIX 4 AA4 GLN A 103 VAL A 107 5 5 HELIX 5 AA5 HIS A 116 GLY A 121 1 6 HELIX 6 AA6 ASP A 139 LEU A 147 1 9 HELIX 7 AA7 SER A 148 ALA A 155 1 8 HELIX 8 AA8 PRO A 156 ALA A 176 1 21 HELIX 9 AA9 VAL A 225 PHE A 230 1 6 HELIX 10 AB1 ASP A 242 GLY A 261 1 20 HELIX 11 AB2 PRO B 35 LEU B 40 1 6 HELIX 12 AB3 PRO B 43 SER B 54 1 12 HELIX 13 AB4 LYS B 92 ALA B 100 1 9 HELIX 14 AB5 GLN B 103 VAL B 107 5 5 HELIX 15 AB6 HIS B 116 GLY B 121 1 6 HELIX 16 AB7 ASP B 139 LEU B 147 1 9 HELIX 17 AB8 SER B 148 ALA B 155 1 8 HELIX 18 AB9 PRO B 156 ALA B 176 1 21 HELIX 19 AC1 VAL B 225 PHE B 230 1 6 HELIX 20 AC2 ASP B 242 GLY B 261 1 20 SHEET 1 AA1 6 PHE A 14 LEU A 19 0 SHEET 2 AA1 6 PHE A 22 LEU A 34 -1 O PHE A 22 N LEU A 19 SHEET 3 AA1 6 LEU A 60 ASN A 70 -1 O VAL A 64 N ASP A 29 SHEET 4 AA1 6 LEU A 75 VAL A 78 -1 O VAL A 76 N VAL A 69 SHEET 5 AA1 6 GLU A 109 TYR A 111 1 O TYR A 111 N LEU A 77 SHEET 6 AA1 6 VAL A 135 ARG A 137 1 O ARG A 137 N ILE A 110 SHEET 1 AA2 2 MET A 124 ALA A 125 0 SHEET 2 AA2 2 GLN A 128 ALA A 129 -1 O GLN A 128 N ALA A 125 SHEET 1 AA3 7 THR A 186 VAL A 189 0 SHEET 2 AA3 7 ILE A 192 ALA A 196 -1 O ALA A 194 N THR A 186 SHEET 3 AA3 7 THR A 205 SER A 211 -1 O THR A 206 N LEU A 195 SHEET 4 AA3 7 GLN A 214 LEU A 218 -1 O LEU A 218 N TYR A 207 SHEET 5 AA3 7 LEU A 263 GLY A 265 1 O LEU A 263 N VAL A 217 SHEET 6 AA3 7 ILE A 274 ASP A 280 -1 O GLY A 275 N ILE A 264 SHEET 7 AA3 7 GLY A 283 PRO A 288 -1 O VAL A 287 N HIS A 276 SHEET 1 AA4 6 PHE B 14 LEU B 19 0 SHEET 2 AA4 6 PHE B 22 LEU B 34 -1 O VAL B 24 N MET B 17 SHEET 3 AA4 6 LEU B 60 ASN B 70 -1 O VAL B 64 N ASP B 29 SHEET 4 AA4 6 LEU B 75 VAL B 78 -1 O VAL B 78 N TYR B 67 SHEET 5 AA4 6 GLU B 109 TYR B 111 1 O TYR B 111 N LEU B 77 SHEET 6 AA4 6 VAL B 135 ARG B 137 1 O ARG B 137 N ILE B 110 SHEET 1 AA5 2 MET B 124 ALA B 125 0 SHEET 2 AA5 2 GLN B 128 ALA B 129 -1 O GLN B 128 N ALA B 125 SHEET 1 AA6 7 THR B 186 VAL B 189 0 SHEET 2 AA6 7 ILE B 192 ALA B 196 -1 O ALA B 194 N THR B 186 SHEET 3 AA6 7 THR B 205 SER B 211 -1 O THR B 206 N LEU B 195 SHEET 4 AA6 7 GLN B 214 LEU B 218 -1 O LEU B 218 N TYR B 207 SHEET 5 AA6 7 LEU B 263 GLY B 265 1 O LEU B 263 N VAL B 217 SHEET 6 AA6 7 ILE B 274 ASP B 280 -1 O GLY B 275 N ILE B 264 SHEET 7 AA6 7 GLY B 283 PRO B 288 -1 O VAL B 287 N HIS B 276 LINK NE2 HIS A 114 ZN ZN A 402 1555 1555 2.14 LINK ND1 HIS A 116 ZN ZN A 402 1555 1555 2.28 LINK OD2 ASP A 118 ZN ZN A 401 1555 1555 2.32 LINK NE2 HIS A 119 ZN ZN A 401 1555 1555 2.10 LINK NE2 HIS A 200 ZN ZN A 402 1555 1555 2.32 LINK OD2 ASP A 221 ZN ZN A 401 1555 1555 2.15 LINK OD2 ASP A 221 ZN ZN A 402 1555 1555 2.19 LINK NE2 HIS A 268 ZN ZN A 401 1555 1555 2.18 LINK ZN ZN A 401 O HOH A 517 1555 1555 1.86 LINK ZN ZN A 402 O HOH A 517 1555 1555 1.89 LINK ZN ZN A 402 O HOH A 652 1555 1555 2.23 LINK MG MG A 403 O HOH A 552 1555 1555 2.12 LINK MG MG A 403 O HOH A 575 1555 1555 2.13 LINK MG MG A 403 O HOH B 646 1555 1555 2.12 LINK O HOH A 515 MG MG B 403 1555 1555 2.08 LINK NE2 HIS B 114 ZN ZN B 402 1555 1555 2.19 LINK ND1 HIS B 116 ZN ZN B 402 1555 1555 2.35 LINK OD2 ASP B 118 ZN ZN B 401 1555 1555 2.27 LINK NE2 HIS B 119 ZN ZN B 401 1555 1555 2.09 LINK NE2 HIS B 200 ZN ZN B 402 1555 1555 2.30 LINK OD2 ASP B 221 ZN ZN B 401 1555 1555 2.16 LINK OD2 ASP B 221 ZN ZN B 402 1555 1555 2.02 LINK NE2 HIS B 268 ZN ZN B 401 1555 1555 2.14 LINK ZN ZN B 401 O HOH B 514 1555 1555 1.87 LINK ZN ZN B 402 O HOH B 514 1555 1555 1.86 LINK ZN ZN B 402 O HOH B 581 1555 1555 2.20 LINK MG MG B 403 O HOH B 555 1555 1555 2.20 LINK MG MG B 403 O HOH B 605 1555 1555 2.48 CISPEP 1 ALA A 58 PRO A 59 0 -1.26 CISPEP 2 PHE A 271 PRO A 272 0 12.49 CISPEP 3 ALA B 58 PRO B 59 0 1.33 CISPEP 4 PHE B 271 PRO B 272 0 10.62 SITE 1 AC1 6 ASP A 118 HIS A 119 ASP A 221 HIS A 268 SITE 2 AC1 6 ZN A 402 HOH A 517 SITE 1 AC2 7 HIS A 114 HIS A 116 HIS A 200 ASP A 221 SITE 2 AC2 7 ZN A 401 HOH A 517 HOH A 652 SITE 1 AC3 3 HOH A 552 HOH A 575 HOH B 646 SITE 1 AC4 6 VAL A 32 PRO A 117 ASP A 118 PHE A 162 SITE 2 AC4 6 PHE A 239 HIS A 268 SITE 1 AC5 6 ASP B 118 HIS B 119 ASP B 221 HIS B 268 SITE 2 AC5 6 ZN B 402 HOH B 514 SITE 1 AC6 7 HIS B 114 HIS B 116 HIS B 200 ASP B 221 SITE 2 AC6 7 ZN B 401 HOH B 514 HOH B 581 SITE 1 AC7 3 HOH A 515 HOH B 555 HOH B 605 SITE 1 AC8 6 VAL B 32 PHE B 86 HIS B 116 ASP B 118 SITE 2 AC8 6 PHE B 162 HIS B 268 CRYST1 57.600 88.150 119.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008347 0.00000