HEADER ISOMERASE 08-JAN-18 6C2G TITLE HUMAN TRIOSEPHOSPHATE ISOMERASE MUTANT V231M COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: V231M; SOURCE 6 GENE: TPI1, TPI; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.A.TORRES,F.S.ENRIQUEZ REVDAT 4 04-OCT-23 6C2G 1 REMARK REVDAT 3 11-APR-18 6C2G 1 JRNL REVDAT 2 04-APR-18 6C2G 1 JRNL REVDAT 1 21-MAR-18 6C2G 0 JRNL AUTH N.CABRERA,A.TORRES-LARIOS,I.GARCIA-TORRES,S.ENRIQUEZ-FLORES, JRNL AUTH 2 R.PEREZ-MONTFORT JRNL TITL DIFFERENTIAL EFFECTS ON ENZYME STABILITY AND KINETIC JRNL TITL 2 PARAMETERS OF MUTANTS RELATED TO HUMAN TRIOSEPHOSPHATE JRNL TITL 3 ISOMERASE DEFICIENCY. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1862 1401 2018 JRNL REFN ISSN 0006-3002 JRNL PMID 29571745 JRNL DOI 10.1016/J.BBAGEN.2018.03.019 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.368 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.175 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7504 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7120 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10160 ; 1.333 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16536 ; 1.049 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 972 ; 5.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;40.350 ;25.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1288 ;13.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ; 9.207 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1148 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8416 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3900 ; 0.301 ; 2.248 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3899 ; 0.301 ; 2.248 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4868 ; 0.544 ; 3.371 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4869 ; 0.544 ; 3.371 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3604 ; 0.218 ; 2.241 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3604 ; 0.218 ; 2.241 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5292 ; 0.389 ; 3.360 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8114 ; 2.225 ;26.288 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8094 ; 2.178 ;26.224 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 247 B 4 247 15182 0.06 0.05 REMARK 3 2 A 4 247 C 4 247 15142 0.06 0.05 REMARK 3 3 A 4 247 D 4 247 14916 0.09 0.05 REMARK 3 4 B 4 247 C 4 247 15160 0.06 0.05 REMARK 3 5 B 4 247 D 4 247 14946 0.08 0.05 REMARK 3 6 C 4 247 D 4 247 14864 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 58.6210 9.0200 24.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0658 REMARK 3 T33: 0.0683 T12: -0.0344 REMARK 3 T13: 0.0166 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.4423 L22: 2.5080 REMARK 3 L33: 2.9257 L12: -0.3819 REMARK 3 L13: 0.7111 L23: -1.9528 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0150 S13: -0.1028 REMARK 3 S21: -0.3187 S22: 0.0236 S23: -0.0821 REMARK 3 S31: 0.1812 S32: 0.2084 S33: -0.0493 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 76.1220 -2.2100 55.5350 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.2062 REMARK 3 T33: 0.1136 T12: 0.0188 REMARK 3 T13: 0.0019 T23: 0.1306 REMARK 3 L TENSOR REMARK 3 L11: 4.1570 L22: 0.9315 REMARK 3 L33: 2.0734 L12: 0.6136 REMARK 3 L13: 0.6337 L23: 0.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: -0.5765 S13: -0.6285 REMARK 3 S21: 0.0899 S22: -0.0019 S23: -0.0516 REMARK 3 S31: 0.2074 S32: -0.0080 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 247 REMARK 3 ORIGIN FOR THE GROUP (A): 87.6370 -27.0700 16.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1696 REMARK 3 T33: 0.2614 T12: 0.0252 REMARK 3 T13: 0.0762 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 2.2458 L22: 1.6569 REMARK 3 L33: 1.3596 L12: -0.7705 REMARK 3 L13: 0.5232 L23: -0.2571 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.3187 S13: 0.3187 REMARK 3 S21: 0.1213 S22: 0.2091 S23: 0.2249 REMARK 3 S31: -0.2707 S32: -0.3690 S33: -0.1705 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 247 REMARK 3 ORIGIN FOR THE GROUP (A): 92.9140 24.5800 68.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.5570 REMARK 3 T33: 0.4252 T12: 0.0102 REMARK 3 T13: -0.1673 T23: -0.2275 REMARK 3 L TENSOR REMARK 3 L11: 3.4779 L22: 2.9280 REMARK 3 L33: 2.5513 L12: -0.6943 REMARK 3 L13: 0.7151 L23: 0.5262 REMARK 3 S TENSOR REMARK 3 S11: -0.3978 S12: -0.8226 S13: 1.1126 REMARK 3 S21: 0.3724 S22: 0.2527 S23: -0.5299 REMARK 3 S31: -0.7590 S32: 0.1603 S33: 0.1451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000230939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JK2 REMARK 200 REMARK 200 REMARK: 100X100X200 MICROMETERS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS HYDROCHLORIDE PH 8.5, 30% W/V POLYETHYLENE GLYCOL 4, REMARK 280 000., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 167.31100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 167.31100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -48.07300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 63.45200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLN A 248 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLN B 248 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 SER C 3 REMARK 465 THR C 172 REMARK 465 GLN C 248 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 PRO D 2 REMARK 465 SER D 3 REMARK 465 GLN D 179 REMARK 465 ALA D 215 REMARK 465 ALA D 221 REMARK 465 GLN D 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -146.15 54.21 REMARK 500 VAL A 196 -79.17 -117.31 REMARK 500 LYS B 13 -146.41 53.82 REMARK 500 ASP B 36 33.12 -95.02 REMARK 500 VAL B 196 -79.81 -118.56 REMARK 500 GLU B 239 -39.56 -33.34 REMARK 500 LYS C 13 -146.26 54.47 REMARK 500 VAL C 196 -80.06 -117.78 REMARK 500 LYS D 13 -147.20 54.47 REMARK 500 ASP D 36 39.29 -98.19 REMARK 500 VAL D 196 -79.66 -117.83 REMARK 500 GLU D 239 -39.69 -33.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 352 DISTANCE = 6.15 ANGSTROMS DBREF 6C2G A 0 248 UNP P60174 TPIS_HUMAN 38 286 DBREF 6C2G B 0 248 UNP P60174 TPIS_HUMAN 38 286 DBREF 6C2G C 0 248 UNP P60174 TPIS_HUMAN 38 286 DBREF 6C2G D 0 248 UNP P60174 TPIS_HUMAN 38 286 SEQADV 6C2G MET A 231 UNP P60174 VAL 269 ENGINEERED MUTATION SEQADV 6C2G MET B 231 UNP P60174 VAL 269 ENGINEERED MUTATION SEQADV 6C2G MET C 231 UNP P60174 VAL 269 ENGINEERED MUTATION SEQADV 6C2G MET D 231 UNP P60174 VAL 269 ENGINEERED MUTATION SEQRES 1 A 249 MET ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 A 249 LYS MET ASN GLY ARG LYS GLN SER LEU GLY GLU LEU ILE SEQRES 3 A 249 GLY THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU SEQRES 4 A 249 VAL VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA SEQRES 5 A 249 ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN SEQRES 6 A 249 ASN CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU SEQRES 7 A 249 ILE SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP SEQRES 8 A 249 VAL VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY SEQRES 9 A 249 GLU SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA SEQRES 10 A 249 LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU SEQRES 11 A 249 LYS LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL SEQRES 12 A 249 VAL PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS SEQRES 13 A 249 ASP TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 A 249 ALA ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA SEQRES 15 A 249 GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER SEQRES 16 A 249 ASN VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE SEQRES 17 A 249 TYR GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU SEQRES 18 A 249 ALA SER GLN PRO ASP VAL ASP GLY PHE LEU MET GLY GLY SEQRES 19 A 249 ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA SEQRES 20 A 249 LYS GLN SEQRES 1 B 249 MET ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 B 249 LYS MET ASN GLY ARG LYS GLN SER LEU GLY GLU LEU ILE SEQRES 3 B 249 GLY THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU SEQRES 4 B 249 VAL VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA SEQRES 5 B 249 ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN SEQRES 6 B 249 ASN CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU SEQRES 7 B 249 ILE SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP SEQRES 8 B 249 VAL VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY SEQRES 9 B 249 GLU SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA SEQRES 10 B 249 LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU SEQRES 11 B 249 LYS LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL SEQRES 12 B 249 VAL PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS SEQRES 13 B 249 ASP TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 B 249 ALA ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA SEQRES 15 B 249 GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER SEQRES 16 B 249 ASN VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE SEQRES 17 B 249 TYR GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU SEQRES 18 B 249 ALA SER GLN PRO ASP VAL ASP GLY PHE LEU MET GLY GLY SEQRES 19 B 249 ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA SEQRES 20 B 249 LYS GLN SEQRES 1 C 249 MET ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 C 249 LYS MET ASN GLY ARG LYS GLN SER LEU GLY GLU LEU ILE SEQRES 3 C 249 GLY THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU SEQRES 4 C 249 VAL VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA SEQRES 5 C 249 ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN SEQRES 6 C 249 ASN CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU SEQRES 7 C 249 ILE SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP SEQRES 8 C 249 VAL VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY SEQRES 9 C 249 GLU SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA SEQRES 10 C 249 LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU SEQRES 11 C 249 LYS LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL SEQRES 12 C 249 VAL PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS SEQRES 13 C 249 ASP TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 C 249 ALA ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA SEQRES 15 C 249 GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER SEQRES 16 C 249 ASN VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE SEQRES 17 C 249 TYR GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU SEQRES 18 C 249 ALA SER GLN PRO ASP VAL ASP GLY PHE LEU MET GLY GLY SEQRES 19 C 249 ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA SEQRES 20 C 249 LYS GLN SEQRES 1 D 249 MET ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP SEQRES 2 D 249 LYS MET ASN GLY ARG LYS GLN SER LEU GLY GLU LEU ILE SEQRES 3 D 249 GLY THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU SEQRES 4 D 249 VAL VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA SEQRES 5 D 249 ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN SEQRES 6 D 249 ASN CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU SEQRES 7 D 249 ILE SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP SEQRES 8 D 249 VAL VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY SEQRES 9 D 249 GLU SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA SEQRES 10 D 249 LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU SEQRES 11 D 249 LYS LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL SEQRES 12 D 249 VAL PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS SEQRES 13 D 249 ASP TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP SEQRES 14 D 249 ALA ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA SEQRES 15 D 249 GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER SEQRES 16 D 249 ASN VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE SEQRES 17 D 249 TYR GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU SEQRES 18 D 249 ALA SER GLN PRO ASP VAL ASP GLY PHE LEU MET GLY GLY SEQRES 19 D 249 ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA SEQRES 20 D 249 LYS GLN FORMUL 5 HOH *198(H2 O) HELIX 1 AA1 ARG A 17 ALA A 31 1 15 HELIX 2 AA2 PRO A 44 ALA A 46 5 3 HELIX 3 AA3 TYR A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 CYS A 86 1 8 HELIX 5 AA5 HIS A 95 VAL A 101 1 7 HELIX 6 AA6 SER A 105 GLU A 119 1 15 HELIX 7 AA7 LYS A 130 ALA A 136 1 7 HELIX 8 AA8 ILE A 138 ASP A 152 1 15 HELIX 9 AA9 ASP A 156 SER A 158 5 3 HELIX 10 AB1 PRO A 166 ILE A 170 5 5 HELIX 11 AB2 THR A 177 VAL A 196 1 20 HELIX 12 AB3 SER A 197 THR A 204 1 8 HELIX 13 AB4 THR A 216 SER A 222 1 7 HELIX 14 AB5 GLY A 232 PRO A 238 5 7 HELIX 15 AB6 GLU A 239 ASN A 245 1 7 HELIX 16 AB7 ARG B 17 ALA B 31 1 15 HELIX 17 AB8 PRO B 44 ALA B 46 5 3 HELIX 18 AB9 TYR B 47 LEU B 55 1 9 HELIX 19 AC1 SER B 79 CYS B 86 1 8 HELIX 20 AC2 HIS B 95 VAL B 101 1 7 HELIX 21 AC3 SER B 105 GLU B 119 1 15 HELIX 22 AC4 LYS B 130 ALA B 136 1 7 HELIX 23 AC5 ILE B 138 ASP B 152 1 15 HELIX 24 AC6 ASP B 156 SER B 158 5 3 HELIX 25 AC7 PRO B 166 ILE B 170 5 5 HELIX 26 AC8 THR B 177 VAL B 196 1 20 HELIX 27 AC9 SER B 197 THR B 204 1 8 HELIX 28 AD1 THR B 216 SER B 222 1 7 HELIX 29 AD2 GLY B 232 PRO B 238 5 7 HELIX 30 AD3 GLU B 239 ASN B 245 1 7 HELIX 31 AD4 ARG C 17 ALA C 31 1 15 HELIX 32 AD5 PRO C 44 ALA C 46 5 3 HELIX 33 AD6 TYR C 47 LEU C 55 1 9 HELIX 34 AD7 SER C 79 CYS C 86 1 8 HELIX 35 AD8 HIS C 95 VAL C 101 1 7 HELIX 36 AD9 SER C 105 GLU C 119 1 15 HELIX 37 AE1 LYS C 130 ALA C 136 1 7 HELIX 38 AE2 ILE C 138 ASP C 152 1 15 HELIX 39 AE3 ASP C 156 SER C 158 5 3 HELIX 40 AE4 PRO C 166 ILE C 170 5 5 HELIX 41 AE5 THR C 177 VAL C 196 1 20 HELIX 42 AE6 SER C 197 THR C 204 1 8 HELIX 43 AE7 THR C 216 SER C 222 1 7 HELIX 44 AE8 GLY C 232 LYS C 237 5 6 HELIX 45 AE9 PRO C 238 ASN C 245 1 8 HELIX 46 AF1 ARG D 17 ALA D 31 1 15 HELIX 47 AF2 PRO D 44 ALA D 46 5 3 HELIX 48 AF3 TYR D 47 LEU D 55 1 9 HELIX 49 AF4 SER D 79 CYS D 86 1 8 HELIX 50 AF5 HIS D 95 VAL D 101 1 7 HELIX 51 AF6 SER D 105 GLU D 119 1 15 HELIX 52 AF7 LYS D 130 ALA D 136 1 7 HELIX 53 AF8 ILE D 138 ASP D 152 1 15 HELIX 54 AF9 ASP D 156 SER D 158 5 3 HELIX 55 AG1 PRO D 166 ILE D 170 5 5 HELIX 56 AG2 THR D 177 PRO D 178 5 2 HELIX 57 AG3 GLN D 180 GLN D 180 5 1 HELIX 58 AG4 ALA D 181 VAL D 196 1 16 HELIX 59 AG5 SER D 197 THR D 204 1 8 HELIX 60 AG6 GLY D 232 PRO D 238 5 7 HELIX 61 AG7 GLU D 239 ASN D 245 1 7 SHEET 1 AA1 9 PHE A 6 ASN A 11 0 SHEET 2 AA1 9 THR A 37 ALA A 42 1 O ALA A 42 N GLY A 10 SHEET 3 AA1 9 ILE A 59 ALA A 63 1 O ALA A 62 N CYS A 41 SHEET 4 AA1 9 TRP A 90 LEU A 93 1 O VAL A 92 N ALA A 63 SHEET 5 AA1 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 AA1 9 VAL A 160 TYR A 164 1 O VAL A 161 N ALA A 125 SHEET 7 AA1 9 ILE A 206 TYR A 208 1 O ILE A 207 N LEU A 162 SHEET 8 AA1 9 GLY A 228 MET A 231 1 O GLY A 228 N TYR A 208 SHEET 9 AA1 9 PHE A 6 ASN A 11 1 N GLY A 9 O PHE A 229 SHEET 1 AA2 9 PHE B 6 ASN B 11 0 SHEET 2 AA2 9 THR B 37 ALA B 42 1 O ALA B 42 N GLY B 10 SHEET 3 AA2 9 ILE B 59 ALA B 63 1 O ALA B 62 N CYS B 41 SHEET 4 AA2 9 TRP B 90 LEU B 93 1 O VAL B 92 N ALA B 63 SHEET 5 AA2 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 AA2 9 VAL B 160 TYR B 164 1 O VAL B 161 N ALA B 125 SHEET 7 AA2 9 ILE B 206 TYR B 208 1 O ILE B 207 N LEU B 162 SHEET 8 AA2 9 GLY B 228 MET B 231 1 O GLY B 228 N TYR B 208 SHEET 9 AA2 9 PHE B 6 ASN B 11 1 N GLY B 9 O PHE B 229 SHEET 1 AA3 9 PHE C 6 ASN C 11 0 SHEET 2 AA3 9 THR C 37 ALA C 42 1 O ALA C 42 N GLY C 10 SHEET 3 AA3 9 ILE C 59 ALA C 63 1 O ALA C 62 N CYS C 41 SHEET 4 AA3 9 TRP C 90 LEU C 93 1 O VAL C 92 N ALA C 63 SHEET 5 AA3 9 GLY C 122 ILE C 127 1 O CYS C 126 N LEU C 93 SHEET 6 AA3 9 VAL C 160 TYR C 164 1 O VAL C 161 N ALA C 125 SHEET 7 AA3 9 ILE C 206 TYR C 208 1 O ILE C 207 N LEU C 162 SHEET 8 AA3 9 GLY C 228 MET C 231 1 O GLY C 228 N TYR C 208 SHEET 9 AA3 9 PHE C 6 ASN C 11 1 N GLY C 9 O PHE C 229 SHEET 1 AA4 9 PHE D 6 ASN D 11 0 SHEET 2 AA4 9 THR D 37 ALA D 42 1 O ALA D 42 N GLY D 10 SHEET 3 AA4 9 ILE D 59 ALA D 63 1 O ALA D 62 N CYS D 41 SHEET 4 AA4 9 TRP D 90 LEU D 93 1 O VAL D 92 N ALA D 63 SHEET 5 AA4 9 GLY D 122 ILE D 127 1 O CYS D 126 N LEU D 93 SHEET 6 AA4 9 VAL D 160 TYR D 164 1 O VAL D 161 N ALA D 125 SHEET 7 AA4 9 ILE D 206 TYR D 208 1 O ILE D 207 N LEU D 162 SHEET 8 AA4 9 GLY D 228 MET D 231 1 O GLY D 228 N TYR D 208 SHEET 9 AA4 9 PHE D 6 ASN D 11 1 N GLY D 9 O PHE D 229 CRYST1 48.073 63.452 334.622 90.00 90.00 90.00 P 2 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002988 0.00000