HEADER TRANSCRIPTION/DNA 08-JAN-18 6C2J OBSLTE 03-OCT-18 6C2J 6DT7 TITLE BACTERIOPHAGE N4 RNA POLYMERASE II AND DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNAP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNAP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*CP*CP*AP*CP*CP*TP*GP*CP*A)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE N4; SOURCE 4 ORGANISM_TAXID: 10752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N4; SOURCE 9 ORGANISM_COMMON: BACTERIOPHAGE N4; SOURCE 10 ORGANISM_TAXID: 10752; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE N4; SOURCE 16 ORGANISM_TAXID: 10752 KEYWDS BACTERIOPHAGE, N4, RNA POLYMERASE, TRANSCRIPTION, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.MOLODTSOV,K.S.MURAKAMI REVDAT 3 03-OCT-18 6C2J 1 OBSLTE REVDAT 2 28-MAR-18 6C2J 1 JRNL REVDAT 1 31-JAN-18 6C2J 0 JRNL AUTH V.MOLODTSOV,K.S.MURAKAMI JRNL TITL BACTERIOPHAGE N4 RNA POLYMERASE II AND DNA COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3367 - 6.0205 0.99 2750 144 0.1623 0.1884 REMARK 3 2 6.0205 - 4.7806 1.00 2679 147 0.1640 0.1799 REMARK 3 3 4.7806 - 4.1769 1.00 2680 144 0.1460 0.1669 REMARK 3 4 4.1769 - 3.7952 1.00 2657 144 0.1688 0.1988 REMARK 3 5 3.7952 - 3.5233 1.00 2695 135 0.1871 0.2206 REMARK 3 6 3.5233 - 3.3157 1.00 2655 136 0.2152 0.2215 REMARK 3 7 3.3157 - 3.1497 1.00 2659 139 0.2245 0.2486 REMARK 3 8 3.1497 - 3.0126 1.00 2652 143 0.2339 0.2664 REMARK 3 9 3.0126 - 2.8967 1.00 2683 138 0.2326 0.2784 REMARK 3 10 2.8967 - 2.7967 1.00 2604 138 0.2360 0.2569 REMARK 3 11 2.7967 - 2.7093 1.00 2667 140 0.2475 0.2871 REMARK 3 12 2.7093 - 2.6319 1.00 2654 136 0.2730 0.2970 REMARK 3 13 2.6319 - 2.5626 1.00 2659 138 0.3159 0.3859 REMARK 3 14 2.5626 - 2.5001 1.00 2662 139 0.3393 0.3665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5743 REMARK 3 ANGLE : 1.294 7800 REMARK 3 CHIRALITY : 0.072 848 REMARK 3 PLANARITY : 0.009 977 REMARK 3 DIHEDRAL : 15.120 3415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.8675 224.8872 2.7947 REMARK 3 T TENSOR REMARK 3 T11: 0.5137 T22: 0.5296 REMARK 3 T33: 0.5758 T12: -0.0248 REMARK 3 T13: -0.0860 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 2.0037 L22: 1.3882 REMARK 3 L33: 1.3554 L12: 0.7154 REMARK 3 L13: -0.1718 L23: -0.1171 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0352 S13: 0.0074 REMARK 3 S21: -0.0891 S22: -0.0787 S23: 0.3318 REMARK 3 S31: 0.3644 S32: -0.3356 S33: 0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 25.0306 229.1686 2.9031 REMARK 3 T TENSOR REMARK 3 T11: 0.3865 T22: 0.5581 REMARK 3 T33: 0.4278 T12: 0.0719 REMARK 3 T13: -0.0350 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.3653 L22: 1.6885 REMARK 3 L33: 1.6771 L12: -0.1148 REMARK 3 L13: 0.7461 L23: -0.4356 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: 0.1934 S13: -0.0438 REMARK 3 S21: -0.1539 S22: -0.1264 S23: -0.2016 REMARK 3 S31: 0.2432 S32: 0.4363 S33: 0.0416 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 4.9548 217.9465 7.0580 REMARK 3 T TENSOR REMARK 3 T11: 1.4687 T22: 2.2471 REMARK 3 T33: 1.9440 T12: 0.0498 REMARK 3 T13: -0.0146 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.3193 L22: 0.8297 REMARK 3 L33: 0.0340 L12: 1.3702 REMARK 3 L13: 0.0136 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.6060 S12: 0.0858 S13: 0.5586 REMARK 3 S21: -0.3702 S22: 0.4573 S23: 0.1956 REMARK 3 S31: 1.0376 S32: -0.2733 S33: 0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9782 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE, 0.085 M SODIUM REMARK 280 CACODYLATE (PH 6.5), 15% PEG8000, 15% GLYCEROL AND 5 MICROM REMARK 280 SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 86.66050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.66050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.15800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 86.66050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.66050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.15800 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 86.66050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 86.66050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.15800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 86.66050 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 86.66050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.15800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 194 REMARK 465 GLY A 195 REMARK 465 GLU A 196 REMARK 465 DC C -1 REMARK 465 DA C 9 REMARK 465 DA C 10 REMARK 465 DA C 11 REMARK 465 DC C 12 REMARK 465 DG C 13 REMARK 465 DG C 14 REMARK 465 DT C 15 REMARK 465 DC C 16 REMARK 465 DT C 17 REMARK 465 DG C 18 REMARK 465 DC C 19 REMARK 465 DG C 20 REMARK 465 DA C 21 REMARK 465 DA C 22 REMARK 465 DT C 23 REMARK 465 DC C 24 REMARK 465 DT C 25 REMARK 465 DC C 26 REMARK 465 DT C 27 REMARK 465 DC C 28 REMARK 465 DT C 29 REMARK 465 DG C 30 REMARK 465 DA C 31 REMARK 465 DT C 32 REMARK 465 DT C 33 REMARK 465 DC C 34 REMARK 465 DG C 35 REMARK 465 DC C 36 REMARK 465 DA C 37 REMARK 465 DG C 38 REMARK 465 DA C 39 REMARK 465 DC C 40 REMARK 465 DC C 41 REMARK 465 DG C 42 REMARK 465 DT C 43 REMARK 465 DT C 44 REMARK 465 DT C 45 REMARK 465 DT C 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 258 O HOH A 301 2.12 REMARK 500 NE ARG A 129 O HOH A 302 2.14 REMARK 500 O HOH A 318 O HOH A 320 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 177 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 177 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 MET B 238 CB - CG - SD ANGL. DEV. = 18.7 DEGREES REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 -89.66 -103.50 REMARK 500 LYS A 60 -57.03 60.57 REMARK 500 LYS A 151 -161.16 60.63 REMARK 500 ASN A 153 43.07 -145.61 REMARK 500 ARG A 198 -10.57 -149.10 REMARK 500 SER B 78 62.31 62.63 REMARK 500 ALA B 130 79.26 -49.68 REMARK 500 ALA B 173 68.19 -156.53 REMARK 500 ASP B 220 19.99 54.97 REMARK 500 HIS B 341 -52.73 67.10 REMARK 500 ASP B 342 14.76 -141.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 129 18.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 6C2J A 1 269 UNP Q8LTE4 Q8LTE4_BPN4 1 269 DBREF 6C2J B 1 404 UNP Q8LTE3 Q8LTE3_BPN4 1 404 DBREF 6C2J C -1 46 PDB 6C2J 6C2J -1 46 SEQRES 1 A 269 MET SER THR ILE GLU HIS GLN MET HIS LEU GLU LYS LEU SEQRES 2 A 269 TYR ASN LYS ASN GLN LEU LEU PRO ARG MET ARG GLN GLU SEQRES 3 A 269 PHE GLU GLU ASN SER GLY ILE ASP PHE LYS ALA PHE PHE SEQRES 4 A 269 ALA HIS ILE GLY ILE ASP TYR LYS PHE GLY ILE ASP ALA SEQRES 5 A 269 MET VAL GLN MET ALA LEU HIS LYS ARG ALA ASP LEU PRO SEQRES 6 A 269 THR LEU VAL GLY THR LEU ARG HIS HIS CYS LYS SER ALA SEQRES 7 A 269 GLN GLU VAL ALA ASP ASN LEU PHE LYS MET ALA SER GLU SEQRES 8 A 269 ASP CYS PHE ASN PHE ASP PRO THR ILE ASP LYS PHE ILE SEQRES 9 A 269 VAL ILE TYR THR ILE SER ASP ASP VAL GLN HIS GLU LEU SEQRES 10 A 269 ASP SER PHE GLN TYR PRO LEU PRO MET VAL VAL ARG PRO SEQRES 11 A 269 LYS LEU LEU THR LYS ASN TYR GLY THR GLY TYR PHE THR SEQRES 12 A 269 CYS ASN LYS SER VAL ILE LEU LYS LYS ASN HIS THR ASP SEQRES 13 A 269 ASP ASP ILE CYS LEU ASP HIS LEU ASN ARG MET ASN LYS SEQRES 14 A 269 ILE PRO LEU SER ILE ASN TRP ASP VAL ALA HIS MET VAL SEQRES 15 A 269 LYS ASN GLU TRP ALA ASN LEU ASP LYS PRO LYS GLU GLY SEQRES 16 A 269 GLU THR ARG GLN GLU PHE GLU LYS ARG VAL ARG ALA PHE SEQRES 17 A 269 GLN LYS TYR ASP ARG THR ALA HIS GLU VAL MET GLY LEU SEQRES 18 A 269 LEU THR GLN GLU GLY ASN LYS PHE TYR LEU THR HIS ARG SEQRES 19 A 269 PRO ASP LYS ARG GLY ARG THR TYR SER GLN GLY TYR HIS SEQRES 20 A 269 VAL ASN TYR GLN GLY THR SER TRP ASN LYS ALA VAL LEU SEQRES 21 A 269 GLU PHE ALA GLU LYS GLU VAL ILE ASP SEQRES 1 B 404 MET GLN THR PHE THR ALA ARG GLU TYR LEU LYS ILE ASP SEQRES 2 B 404 ILE ALA ASN ASN TYR GLY LEU ASP LYS GLU ASP TRP ASP SEQRES 3 B 404 ASP ARG ILE ALA TRP PHE ASP LYS ASN GLU ASN ASN LEU SEQRES 4 B 404 LEU ASN LEU VAL ARG GLU ALA GLU GLU PRO ALA LEU PHE SEQRES 5 B 404 TYR ALA GLY VAL LYS ALA TRP MET ASP VAL LYS GLU GLY SEQRES 6 B 404 LYS PRO ILE GLY TYR PRO VAL ALA LEU ASP ALA THR SER SEQRES 7 B 404 SER GLY LEU GLN ILE LEU ALA CYS LEU THR GLY ASP ARG SEQRES 8 B 404 ARG ALA ALA GLU LEU CYS ASN VAL VAL ASN TYR ARG ASP SEQRES 9 B 404 GLU SER GLY LYS VAL LYS ARG ARG ASP ALA TYR THR VAL SEQRES 10 B 404 ILE TYR ASN LYS MET LEU ASN THR LEU GLY LYS GLY ALA SEQRES 11 B 404 ARG ILE LYS ARG ASN ASP CYS LYS GLN ALA ILE MET THR SEQRES 12 B 404 ALA LEU TYR GLY SER GLU ALA LYS PRO LYS GLU VAL PHE SEQRES 13 B 404 GLY GLU GLY ILE MET LEU ASN VAL PHE GLU SER THR MET SEQRES 14 B 404 ASN VAL GLU ALA PRO ALA VAL TRP GLU LEU ASN LYS PHE SEQRES 15 B 404 TRP LEU GLN CYS GLY ASN PRO GLU ALA PHE VAL TYR HIS SEQRES 16 B 404 TRP VAL MET PRO ASP GLY PHE ASN VAL TYR ILE LYS VAL SEQRES 17 B 404 MET VAL ASN GLU VAL GLU THR VAL HIS PHE LEU ASP LYS SEQRES 18 B 404 PRO TYR ASP CYS VAL ARG LYS VAL GLN GLY THR GLU GLU SEQRES 19 B 404 LYS THR ARG MET LEU SER ALA ASN THR THR HIS SER ILE SEQRES 20 B 404 ASP GLY LEU VAL VAL ARG GLU LEU VAL ARG ARG CYS ASP SEQRES 21 B 404 TYR ASP LYS ASN GLN ILE GLU TYR ILE LYS ALA LEU CYS SEQRES 22 B 404 ASN GLY GLU ALA GLU TYR LYS ALA SER GLU LYS ASN TYR SEQRES 23 B 404 GLY LYS ALA MET GLU LEU TRP GLY TYR TYR GLU LYS THR SEQRES 24 B 404 GLY PHE LEU THR ALA ARG ILE PHE ASP TYR LEU ASP SER SEQRES 25 B 404 GLU THR ILE LYS LEU VAL ASN THR GLN ASP ILE LEU ASP SEQRES 26 B 404 LEU ILE GLU SER MET PRO LYS LYS PRO PHE HIS VAL LEU SEQRES 27 B 404 THR VAL HIS ASP CYS PHE ARG CYS LEU PRO ASN TYR GLY SEQRES 28 B 404 ASN ASP ILE ARG ARG GLN TYR ASN ASN LEU LEU ALA THR SEQRES 29 B 404 ILE ALA LYS GLY ASP LEU LEU SER PHE ILE MET SER GLN SEQRES 30 B 404 VAL ILE GLY GLN GLU VAL THR ILE GLY LYS LEU ASP PRO SEQRES 31 B 404 THR LEU TRP GLU ASP VAL LEU GLU THR GLU TYR ALA LEU SEQRES 32 B 404 SER SEQRES 1 C 48 DC DC DC DA DC DC DT DG DC DA DA DA DA SEQRES 2 C 48 DC DG DG DT DC DT DG DC DG DA DA DT DC SEQRES 3 C 48 DT DC DT DC DT DG DA DT DT DC DG DC DA SEQRES 4 C 48 DG DA DC DC DG DT DT DT DT FORMUL 4 HOH *36(H2 O) HELIX 1 AA1 SER A 2 ASN A 17 1 16 HELIX 2 AA2 GLN A 18 GLU A 28 1 11 HELIX 3 AA3 ASP A 34 ILE A 42 1 9 HELIX 4 AA4 ASP A 45 LYS A 60 1 16 HELIX 5 AA5 ASP A 63 ARG A 72 1 10 HELIX 6 AA6 HIS A 73 CYS A 75 5 3 HELIX 7 AA7 SER A 77 GLU A 91 1 15 HELIX 8 AA8 SER A 110 GLN A 121 1 12 HELIX 9 AA9 CYS A 160 LYS A 169 1 10 HELIX 10 AB1 ASN A 175 TRP A 186 1 12 HELIX 11 AB2 GLU A 200 THR A 223 1 24 HELIX 12 AB3 THR A 253 ALA A 258 1 6 HELIX 13 AB4 THR B 5 TYR B 18 1 14 HELIX 14 AB5 ASP B 24 GLU B 36 1 13 HELIX 15 AB6 ASN B 37 ALA B 46 5 10 HELIX 16 AB7 GLU B 48 GLU B 64 1 17 HELIX 17 AB8 SER B 78 GLY B 89 1 12 HELIX 18 AB9 ASP B 90 CYS B 97 1 8 HELIX 19 AC1 ASP B 113 GLY B 127 1 15 HELIX 20 AC2 LYS B 133 TYR B 146 1 14 HELIX 21 AC3 GLU B 149 GLY B 157 1 9 HELIX 22 AC4 GLY B 159 ALA B 173 1 15 HELIX 23 AC5 ALA B 173 GLN B 185 1 13 HELIX 24 AC6 MET B 238 ASP B 260 1 23 HELIX 25 AC7 ASP B 262 ASN B 274 1 13 HELIX 26 AC8 LYS B 284 GLY B 300 1 17 HELIX 27 AC9 THR B 303 LEU B 310 5 8 HELIX 28 AD1 GLU B 313 VAL B 318 5 6 HELIX 29 AD2 ASN B 319 SER B 329 1 11 HELIX 30 AD3 LEU B 347 ASN B 349 5 3 HELIX 31 AD4 TYR B 350 GLY B 368 1 19 HELIX 32 AD5 ASP B 369 GLY B 380 1 12 HELIX 33 AD6 THR B 391 LEU B 397 1 7 SHEET 1 AA1 3 ARG A 61 ALA A 62 0 SHEET 2 AA1 3 LYS A 102 ILE A 104 -1 O PHE A 103 N ALA A 62 SHEET 3 AA1 3 ASN A 95 ASP A 97 -1 N ASN A 95 O ILE A 104 SHEET 1 AA2 2 LEU A 172 ILE A 174 0 SHEET 2 AA2 2 LEU A 260 PHE A 262 -1 O GLU A 261 N SER A 173 SHEET 1 AA3 2 HIS A 233 PRO A 235 0 SHEET 2 AA3 2 THR A 241 SER A 243 -1 O TYR A 242 N ARG A 234 SHEET 1 AA4 3 VAL B 72 ASP B 75 0 SHEET 2 AA4 3 CYS B 343 CYS B 346 -1 O PHE B 344 N LEU B 74 SHEET 3 AA4 3 LEU B 338 THR B 339 -1 N LEU B 338 O ARG B 345 SHEET 1 AA5 2 VAL B 193 VAL B 197 0 SHEET 2 AA5 2 ASN B 203 LYS B 207 -1 O VAL B 204 N TRP B 196 SHEET 1 AA6 2 MET B 209 PHE B 218 0 SHEET 2 AA6 2 LYS B 221 GLN B 230 -1 O VAL B 229 N VAL B 210 CISPEP 1 TYR B 18 GLY B 19 0 -4.83 CRYST1 173.321 173.321 76.316 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013103 0.00000