HEADER TRANSCRIPTION/DNA/RNA 08-JAN-18 6C2P OBSLTE 03-OCT-18 6C2P 6DTA TITLE BACTERIOPHAGE N4 RNA POLYMERASE II ELONGATION COMPLEX 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNAP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNAP2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: RNA (5'-R(*UP*UP*GP*GP*UP*GP*G)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE N4; SOURCE 4 ORGANISM_TAXID: 10752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE N4; SOURCE 9 ORGANISM_COMMON: BACTERIOPHAGE N4; SOURCE 10 ORGANISM_TAXID: 10752; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE N4; SOURCE 16 ORGANISM_TAXID: 10752; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE N4; SOURCE 20 ORGANISM_TAXID: 10752 KEYWDS BACTERIOPHAGE, N4, RNA POLYMERASE, TRANSCRIPTION, TRANSCRIPTION-DNA- KEYWDS 2 RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.MOLODTSOV,K.S.MURAKAMI REVDAT 3 03-OCT-18 6C2P 1 OBSLTE REVDAT 2 28-MAR-18 6C2P 1 JRNL REVDAT 1 31-JAN-18 6C2P 0 JRNL AUTH V.MOLODTSOV,K.S.MURAKAMI JRNL TITL BACTERIOPHAGE N4 RNA POLYMERASE II ELONGATION COMPLEX 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 31537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9247 - 6.4724 0.92 2035 139 0.1615 0.1942 REMARK 3 2 6.4724 - 5.1458 0.97 2131 144 0.1873 0.2042 REMARK 3 3 5.1458 - 4.4978 0.98 2114 142 0.1577 0.1822 REMARK 3 4 4.4978 - 4.0877 0.98 2142 137 0.1578 0.1964 REMARK 3 5 4.0877 - 3.7953 0.98 2105 142 0.1753 0.1932 REMARK 3 6 3.7953 - 3.5720 0.99 2131 146 0.1921 0.2411 REMARK 3 7 3.5720 - 3.3933 0.99 2117 144 0.2222 0.2515 REMARK 3 8 3.3933 - 3.2458 0.99 2119 143 0.2386 0.3048 REMARK 3 9 3.2458 - 3.1210 1.00 2150 151 0.2365 0.2313 REMARK 3 10 3.1210 - 3.0134 0.99 2099 142 0.2451 0.2881 REMARK 3 11 3.0134 - 2.9193 0.99 2137 144 0.2683 0.3516 REMARK 3 12 2.9193 - 2.8359 1.00 2133 138 0.2902 0.3081 REMARK 3 13 2.8359 - 2.7613 0.98 2095 145 0.2809 0.2709 REMARK 3 14 2.7613 - 2.6939 0.96 2036 136 0.3091 0.3633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5824 REMARK 3 ANGLE : 1.357 7964 REMARK 3 CHIRALITY : 0.074 875 REMARK 3 PLANARITY : 0.009 958 REMARK 3 DIHEDRAL : 15.309 3424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -53.4381 4.6704 24.9223 REMARK 3 T TENSOR REMARK 3 T11: 0.6905 T22: 0.6139 REMARK 3 T33: 0.7503 T12: -0.0269 REMARK 3 T13: -0.1238 T23: -0.1033 REMARK 3 L TENSOR REMARK 3 L11: 1.7313 L22: 2.9724 REMARK 3 L33: 1.0303 L12: 0.9529 REMARK 3 L13: 0.0619 L23: -0.2184 REMARK 3 S TENSOR REMARK 3 S11: -0.0932 S12: -0.1650 S13: 0.6015 REMARK 3 S21: -0.0338 S22: -0.0992 S23: 0.1390 REMARK 3 S31: -0.5006 S32: 0.2789 S33: 0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -56.6306 -25.1164 25.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.6239 T22: 0.4838 REMARK 3 T33: 0.4603 T12: 0.0900 REMARK 3 T13: -0.0531 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.6521 L22: 1.8668 REMARK 3 L33: 1.8949 L12: -0.1162 REMARK 3 L13: -0.4923 L23: 0.9325 REMARK 3 S TENSOR REMARK 3 S11: -0.1566 S12: -0.3265 S13: -0.2161 REMARK 3 S21: 0.2177 S22: 0.1332 S23: -0.0063 REMARK 3 S31: 0.4895 S32: 0.2419 S33: 0.0966 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -41.5692 -1.6007 23.0915 REMARK 3 T TENSOR REMARK 3 T11: 1.5945 T22: 1.1620 REMARK 3 T33: 1.5642 T12: 0.0597 REMARK 3 T13: -0.1479 T23: 0.1547 REMARK 3 L TENSOR REMARK 3 L11: 4.2671 L22: 5.4283 REMARK 3 L33: 1.9319 L12: 3.4688 REMARK 3 L13: 0.7302 L23: 1.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: -0.3700 S13: 0.8217 REMARK 3 S21: 0.2804 S22: -0.9159 S23: 0.1534 REMARK 3 S31: -0.5171 S32: 0.8553 S33: -0.0297 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -42.1215 -7.6883 24.7056 REMARK 3 T TENSOR REMARK 3 T11: 2.1095 T22: 1.3254 REMARK 3 T33: 1.8831 T12: -0.1971 REMARK 3 T13: -0.6063 T23: 0.3469 REMARK 3 L TENSOR REMARK 3 L11: 2.3110 L22: 4.8668 REMARK 3 L33: 2.5820 L12: 1.4264 REMARK 3 L13: 1.1347 L23: -0.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: 0.3855 S13: 0.2194 REMARK 3 S21: -0.0982 S22: -1.1101 S23: -1.1430 REMARK 3 S31: -0.3707 S32: 1.5074 S33: 0.1141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9783 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.923 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE, 0.085 M SODIUM REMARK 280 CACODYLATE (PH 6.5), 15% PEG8000, 15% GLYCEROL AND 5 MICROM REMARK 280 SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 87.52450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.52450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.29900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 87.52450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.52450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.29900 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 87.52450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 87.52450 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.29900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 87.52450 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 87.52450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.29900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 190 REMARK 465 LYS A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 GLU A 194 REMARK 465 GLY A 195 REMARK 465 GLU A 196 REMARK 465 THR A 197 REMARK 465 ARG A 198 REMARK 465 GLN A 199 REMARK 465 GLU A 200 REMARK 465 PHE A 201 REMARK 465 GLU A 202 REMARK 465 LYS A 203 REMARK 465 ARG A 204 REMARK 465 VAL A 205 REMARK 465 ARG A 206 REMARK 465 ALA A 207 REMARK 465 PHE A 208 REMARK 465 DA C 11 REMARK 465 DA C 12 REMARK 465 DC C 13 REMARK 465 DG C 14 REMARK 465 DG C 15 REMARK 465 DT C 16 REMARK 465 DC C 17 REMARK 465 DT C 18 REMARK 465 DG C 19 REMARK 465 DC C 20 REMARK 465 DG C 21 REMARK 465 DA C 22 REMARK 465 DA C 23 REMARK 465 DT C 24 REMARK 465 DC C 25 REMARK 465 DT C 26 REMARK 465 DC C 27 REMARK 465 DT C 28 REMARK 465 DC C 29 REMARK 465 DT C 30 REMARK 465 DG C 31 REMARK 465 DA C 32 REMARK 465 DT C 33 REMARK 465 DT C 34 REMARK 465 DC C 35 REMARK 465 DG C 36 REMARK 465 DC C 37 REMARK 465 DA C 38 REMARK 465 DG C 39 REMARK 465 DA C 40 REMARK 465 DC C 41 REMARK 465 DC C 42 REMARK 465 DG C 43 REMARK 465 DT C 44 REMARK 465 DT C 45 REMARK 465 DT C 46 REMARK 465 DT C 47 REMARK 465 U D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 ASN A 184 CG OD1 ND2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 TRP A 186 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 186 CZ3 CH2 REMARK 470 ASN A 188 CG OD1 ND2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 U D 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 211 ND2 ASN A 256 2.01 REMARK 500 OH TYR A 122 OP1 DA C 6 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 211 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 MET B 238 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 -89.09 -102.55 REMARK 500 LYS A 60 -57.41 60.72 REMARK 500 LYS A 151 -161.64 62.27 REMARK 500 ASN A 153 43.85 -145.24 REMARK 500 SER B 78 62.11 61.95 REMARK 500 ALA B 173 68.23 -156.55 REMARK 500 ASP B 220 19.57 55.04 REMARK 500 VAL B 340 66.28 -119.52 REMARK 500 HIS B 341 -53.09 68.00 REMARK 500 ASP B 342 14.76 -142.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 1001 DBREF 6C2P A 1 269 UNP Q8LTE4 Q8LTE4_BPN4 1 269 DBREF 6C2P B 1 404 UNP Q8LTE3 Q8LTE3_BPN4 1 404 DBREF 6C2P C 0 47 PDB 6C2P 6C2P 0 47 DBREF 6C2P D 0 7 PDB 6C2P 6C2P 0 7 SEQRES 1 A 269 MET SER THR ILE GLU HIS GLN MET HIS LEU GLU LYS LEU SEQRES 2 A 269 TYR ASN LYS ASN GLN LEU LEU PRO ARG MET ARG GLN GLU SEQRES 3 A 269 PHE GLU GLU ASN SER GLY ILE ASP PHE LYS ALA PHE PHE SEQRES 4 A 269 ALA HIS ILE GLY ILE ASP TYR LYS PHE GLY ILE ASP ALA SEQRES 5 A 269 MET VAL GLN MET ALA LEU HIS LYS ARG ALA ASP LEU PRO SEQRES 6 A 269 THR LEU VAL GLY THR LEU ARG HIS HIS CYS LYS SER ALA SEQRES 7 A 269 GLN GLU VAL ALA ASP ASN LEU PHE LYS MET ALA SER GLU SEQRES 8 A 269 ASP CYS PHE ASN PHE ASP PRO THR ILE ASP LYS PHE ILE SEQRES 9 A 269 VAL ILE TYR THR ILE SER ASP ASP VAL GLN HIS GLU LEU SEQRES 10 A 269 ASP SER PHE GLN TYR PRO LEU PRO MET VAL VAL ARG PRO SEQRES 11 A 269 LYS LEU LEU THR LYS ASN TYR GLY THR GLY TYR PHE THR SEQRES 12 A 269 CYS ASN LYS SER VAL ILE LEU LYS LYS ASN HIS THR ASP SEQRES 13 A 269 ASP ASP ILE CYS LEU ASP HIS LEU ASN ARG MET ASN LYS SEQRES 14 A 269 ILE PRO LEU SER ILE ASN TRP ASP VAL ALA HIS MET VAL SEQRES 15 A 269 LYS ASN GLU TRP ALA ASN LEU ASP LYS PRO LYS GLU GLY SEQRES 16 A 269 GLU THR ARG GLN GLU PHE GLU LYS ARG VAL ARG ALA PHE SEQRES 17 A 269 GLN LYS TYR ASP ARG THR ALA HIS GLU VAL MET GLY LEU SEQRES 18 A 269 LEU THR GLN GLU GLY ASN LYS PHE TYR LEU THR HIS ARG SEQRES 19 A 269 PRO ASP LYS ARG GLY ARG THR TYR SER GLN GLY TYR HIS SEQRES 20 A 269 VAL ASN TYR GLN GLY THR SER TRP ASN LYS ALA VAL LEU SEQRES 21 A 269 GLU PHE ALA GLU LYS GLU VAL ILE ASP SEQRES 1 B 404 MET GLN THR PHE THR ALA ARG GLU TYR LEU LYS ILE ASP SEQRES 2 B 404 ILE ALA ASN ASN TYR GLY LEU ASP LYS GLU ASP TRP ASP SEQRES 3 B 404 ASP ARG ILE ALA TRP PHE ASP LYS ASN GLU ASN ASN LEU SEQRES 4 B 404 LEU ASN LEU VAL ARG GLU ALA GLU GLU PRO ALA LEU PHE SEQRES 5 B 404 TYR ALA GLY VAL LYS ALA TRP MET ASP VAL LYS GLU GLY SEQRES 6 B 404 LYS PRO ILE GLY TYR PRO VAL ALA LEU ASP ALA THR SER SEQRES 7 B 404 SER GLY LEU GLN ILE LEU ALA CYS LEU THR GLY ASP ARG SEQRES 8 B 404 ARG ALA ALA GLU LEU CYS ASN VAL VAL ASN TYR ARG ASP SEQRES 9 B 404 GLU SER GLY LYS VAL LYS ARG ARG ASP ALA TYR THR VAL SEQRES 10 B 404 ILE TYR ASN LYS MET LEU ASN THR LEU GLY LYS GLY ALA SEQRES 11 B 404 ARG ILE LYS ARG ASN ASP CYS LYS GLN ALA ILE MET THR SEQRES 12 B 404 ALA LEU TYR GLY SER GLU ALA LYS PRO LYS GLU VAL PHE SEQRES 13 B 404 GLY GLU GLY ILE MET LEU ASN VAL PHE GLU SER THR MET SEQRES 14 B 404 ASN VAL GLU ALA PRO ALA VAL TRP GLU LEU ASN LYS PHE SEQRES 15 B 404 TRP LEU GLN CYS GLY ASN PRO GLU ALA PHE VAL TYR HIS SEQRES 16 B 404 TRP VAL MET PRO ASP GLY PHE ASN VAL TYR ILE LYS VAL SEQRES 17 B 404 MET VAL ASN GLU VAL GLU THR VAL HIS PHE LEU ASP LYS SEQRES 18 B 404 PRO TYR ASP CYS VAL ARG LYS VAL GLN GLY THR GLU GLU SEQRES 19 B 404 LYS THR ARG MET LEU SER ALA ASN THR THR HIS SER ILE SEQRES 20 B 404 ASP GLY LEU VAL VAL ARG GLU LEU VAL ARG ARG CYS ASP SEQRES 21 B 404 TYR ASP LYS ASN GLN ILE GLU TYR ILE LYS ALA LEU CYS SEQRES 22 B 404 ASN GLY GLU ALA GLU TYR LYS ALA SER GLU LYS ASN TYR SEQRES 23 B 404 GLY LYS ALA MET GLU LEU TRP GLY TYR TYR GLU LYS THR SEQRES 24 B 404 GLY PHE LEU THR ALA ARG ILE PHE ASP TYR LEU ASP SER SEQRES 25 B 404 GLU THR ILE LYS LEU VAL ASN THR GLN ASP ILE LEU ASP SEQRES 26 B 404 LEU ILE GLU SER MET PRO LYS LYS PRO PHE HIS VAL LEU SEQRES 27 B 404 THR VAL HIS ASP CYS PHE ARG CYS LEU PRO ASN TYR GLY SEQRES 28 B 404 ASN ASP ILE ARG ARG GLN TYR ASN ASN LEU LEU ALA THR SEQRES 29 B 404 ILE ALA LYS GLY ASP LEU LEU SER PHE ILE MET SER GLN SEQRES 30 B 404 VAL ILE GLY GLN GLU VAL THR ILE GLY LYS LEU ASP PRO SEQRES 31 B 404 THR LEU TRP GLU ASP VAL LEU GLU THR GLU TYR ALA LEU SEQRES 32 B 404 SER SEQRES 1 C 48 DC DC DC DA DC DC DA DA DA DA DA DA DA SEQRES 2 C 48 DC DG DG DT DC DT DG DC DG DA DA DT DC SEQRES 3 C 48 DT DC DT DC DT DG DA DT DT DC DG DC DA SEQRES 4 C 48 DG DA DC DC DG DT DT DT DT SEQRES 1 D 8 U U U G G U G G HET GTP B1001 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 HOH *14(H2 O) HELIX 1 AA1 SER A 2 ASN A 17 1 16 HELIX 2 AA2 GLN A 18 GLU A 28 1 11 HELIX 3 AA3 ASP A 34 ILE A 42 1 9 HELIX 4 AA4 ASP A 45 LYS A 60 1 16 HELIX 5 AA5 LEU A 64 ARG A 72 1 9 HELIX 6 AA6 HIS A 73 CYS A 75 5 3 HELIX 7 AA7 SER A 77 GLU A 91 1 15 HELIX 8 AA8 SER A 110 GLN A 121 1 12 HELIX 9 AA9 CYS A 160 LYS A 169 1 10 HELIX 10 AB1 ASN A 175 TRP A 186 1 12 HELIX 11 AB2 LYS A 210 THR A 223 1 14 HELIX 12 AB3 THR A 253 ALA A 258 1 6 HELIX 13 AB4 THR B 5 ASN B 17 1 13 HELIX 14 AB5 ASP B 24 GLU B 36 1 13 HELIX 15 AB6 ASN B 37 ALA B 46 5 10 HELIX 16 AB7 GLU B 48 GLU B 64 1 17 HELIX 17 AB8 SER B 78 GLY B 89 1 12 HELIX 18 AB9 ASP B 90 CYS B 97 1 8 HELIX 19 AC1 ASP B 113 GLY B 127 1 15 HELIX 20 AC2 LYS B 133 TYR B 146 1 14 HELIX 21 AC3 GLU B 149 GLY B 157 1 9 HELIX 22 AC4 GLY B 159 ALA B 173 1 15 HELIX 23 AC5 ALA B 173 GLN B 185 1 13 HELIX 24 AC6 MET B 238 ASP B 260 1 23 HELIX 25 AC7 ASP B 262 ASN B 274 1 13 HELIX 26 AC8 SER B 282 GLY B 300 1 19 HELIX 27 AC9 THR B 303 LEU B 310 5 8 HELIX 28 AD1 GLU B 313 VAL B 318 5 6 HELIX 29 AD2 ASN B 319 SER B 329 1 11 HELIX 30 AD3 LEU B 347 ASN B 349 5 3 HELIX 31 AD4 TYR B 350 GLY B 368 1 19 HELIX 32 AD5 ASP B 369 GLY B 380 1 12 HELIX 33 AD6 THR B 391 LEU B 397 1 7 SHEET 1 AA1 3 ARG A 61 ASP A 63 0 SHEET 2 AA1 3 LYS A 102 ILE A 104 -1 O PHE A 103 N ALA A 62 SHEET 3 AA1 3 ASN A 95 ASP A 97 -1 N ASN A 95 O ILE A 104 SHEET 1 AA2 2 LEU A 172 ILE A 174 0 SHEET 2 AA2 2 LEU A 260 PHE A 262 -1 O GLU A 261 N SER A 173 SHEET 1 AA3 2 THR A 232 PRO A 235 0 SHEET 2 AA3 2 THR A 241 GLN A 244 -1 O TYR A 242 N ARG A 234 SHEET 1 AA4 3 VAL B 72 ASP B 75 0 SHEET 2 AA4 3 CYS B 343 CYS B 346 -1 O PHE B 344 N LEU B 74 SHEET 3 AA4 3 LEU B 338 THR B 339 -1 N LEU B 338 O ARG B 345 SHEET 1 AA5 2 VAL B 193 VAL B 197 0 SHEET 2 AA5 2 ASN B 203 LYS B 207 -1 O VAL B 204 N TRP B 196 SHEET 1 AA6 2 MET B 209 HIS B 217 0 SHEET 2 AA6 2 PRO B 222 GLN B 230 -1 O VAL B 229 N VAL B 210 CISPEP 1 TYR B 18 GLY B 19 0 -2.88 SITE 1 AC1 10 GLY B 80 TYR B 115 LYS B 138 MET B 142 SITE 2 AC1 10 TYR B 146 HIS B 245 ASP B 342 DC C 0 SITE 3 AC1 10 DC C 1 G D 7 CRYST1 175.049 175.049 76.598 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013055 0.00000