HEADER DNA BINDING PROTEIN/DNA 08-JAN-18 6C2S TITLE TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MARR FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: COUR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 23-MER; COMPND 8 CHAIN: U, X; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 23-MER; COMPND 12 CHAIN: V, Y; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN ATCC BAA-98 SOURCE 3 / CGA009); SOURCE 4 ORGANISM_TAXID: 258594; SOURCE 5 STRAIN: ATCC BAA-98 / CGA009; SOURCE 6 GENE: RPA1794; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MBP; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 15 ORGANISM_TAXID: 1076; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 19 ORGANISM_TAXID: 1076 KEYWDS TRANSCRIPTIONAL REGULATION, REPRESSOR, MARR FAMILY, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.P.COGAN,S.K.NAIR REVDAT 4 13-MAR-24 6C2S 1 REMARK REVDAT 3 08-AUG-18 6C2S 1 JRNL REVDAT 2 13-JUN-18 6C2S 1 SOURCE JRNL REVDAT 1 30-MAY-18 6C2S 0 JRNL AUTH D.P.COGAN,C.BARAQUET,C.S.HARWOOD,S.K.NAIR JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTIONAL REGULATION BY COUR, A JRNL TITL 2 REPRESSOR OF COUMARATE CATABOLISM, INRHODOPSEUDOMONAS JRNL TITL 3 PALUSTRIS. JRNL REF J. BIOL. CHEM. V. 293 11727 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29794028 JRNL DOI 10.1074/JBC.RA118.003561 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 29930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7399 - 6.3245 0.98 2687 142 0.1473 0.1750 REMARK 3 2 6.3245 - 5.0258 1.00 2637 139 0.1931 0.2419 REMARK 3 3 5.0258 - 4.3922 1.00 2622 138 0.1810 0.2326 REMARK 3 4 4.3922 - 3.9914 1.00 2613 138 0.1945 0.2580 REMARK 3 5 3.9914 - 3.7057 1.00 2576 135 0.2193 0.2744 REMARK 3 6 3.7057 - 3.4875 1.00 2608 138 0.2556 0.3080 REMARK 3 7 3.4875 - 3.3130 0.96 2507 132 0.2649 0.3251 REMARK 3 8 3.3130 - 3.1689 0.97 2520 133 0.2717 0.3660 REMARK 3 9 3.1689 - 3.0470 0.97 2524 131 0.3242 0.3765 REMARK 3 10 3.0470 - 2.9420 1.00 2540 134 0.3328 0.4274 REMARK 3 11 2.9420 - 2.8500 1.00 2599 137 0.3552 0.4123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6552 REMARK 3 ANGLE : 1.550 9238 REMARK 3 CHIRALITY : 0.071 1092 REMARK 3 PLANARITY : 0.009 864 REMARK 3 DIHEDRAL : 19.042 3692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.740 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.1 M AMMONIUM REMARK 280 PHOSPHATE, 12% PEG 6000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.79000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.79000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U, V, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 ILE A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 465 GLU A 34 REMARK 465 THR A 35 REMARK 465 ALA A 36 REMARK 465 PRO A 37 REMARK 465 GLU A 38 REMARK 465 ALA A 39 REMARK 465 GLU A 182 REMARK 465 PHE A 183 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 ARG B 6 REMARK 465 ILE B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 MET B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 LYS B 16 REMARK 465 THR B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 VAL B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 THR B 24 REMARK 465 ARG B 25 REMARK 465 ALA B 26 REMARK 465 GLY B 27 REMARK 465 ARG B 28 REMARK 465 LYS B 29 REMARK 465 ALA B 30 REMARK 465 PRO B 31 REMARK 465 ALA B 32 REMARK 465 VAL B 33 REMARK 465 GLU B 34 REMARK 465 THR B 35 REMARK 465 ALA B 36 REMARK 465 PRO B 37 REMARK 465 GLU B 38 REMARK 465 ALA B 39 REMARK 465 GLU B 182 REMARK 465 PHE B 183 REMARK 465 SER C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 ASN C 5 REMARK 465 ARG C 6 REMARK 465 ILE C 7 REMARK 465 THR C 8 REMARK 465 SER C 9 REMARK 465 PRO C 10 REMARK 465 ALA C 11 REMARK 465 MET C 12 REMARK 465 THR C 13 REMARK 465 ALA C 14 REMARK 465 SER C 15 REMARK 465 LYS C 16 REMARK 465 THR C 17 REMARK 465 ALA C 18 REMARK 465 ALA C 19 REMARK 465 VAL C 20 REMARK 465 ALA C 21 REMARK 465 LYS C 22 REMARK 465 PRO C 23 REMARK 465 THR C 24 REMARK 465 ARG C 25 REMARK 465 ALA C 26 REMARK 465 GLY C 27 REMARK 465 ARG C 28 REMARK 465 LYS C 29 REMARK 465 ALA C 30 REMARK 465 PRO C 31 REMARK 465 ALA C 32 REMARK 465 VAL C 33 REMARK 465 GLU C 34 REMARK 465 THR C 35 REMARK 465 ALA C 36 REMARK 465 PRO C 37 REMARK 465 GLU C 38 REMARK 465 ALA C 39 REMARK 465 GLU C 182 REMARK 465 PHE C 183 REMARK 465 SER D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 ASN D 5 REMARK 465 ARG D 6 REMARK 465 ILE D 7 REMARK 465 THR D 8 REMARK 465 SER D 9 REMARK 465 PRO D 10 REMARK 465 ALA D 11 REMARK 465 MET D 12 REMARK 465 THR D 13 REMARK 465 ALA D 14 REMARK 465 SER D 15 REMARK 465 LYS D 16 REMARK 465 THR D 17 REMARK 465 ALA D 18 REMARK 465 ALA D 19 REMARK 465 VAL D 20 REMARK 465 ALA D 21 REMARK 465 LYS D 22 REMARK 465 PRO D 23 REMARK 465 THR D 24 REMARK 465 ARG D 25 REMARK 465 ALA D 26 REMARK 465 GLY D 27 REMARK 465 ARG D 28 REMARK 465 LYS D 29 REMARK 465 ALA D 30 REMARK 465 PRO D 31 REMARK 465 ALA D 32 REMARK 465 VAL D 33 REMARK 465 GLU D 34 REMARK 465 THR D 35 REMARK 465 ALA D 36 REMARK 465 PRO D 37 REMARK 465 GLU D 38 REMARK 465 ALA D 39 REMARK 465 GLU D 182 REMARK 465 PHE D 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 40 OG REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 SER B 40 OG REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 SER C 40 OG REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 SER D 40 OG REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 ARG D 147 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU C 157 OG1 THR C 161 1.51 REMARK 500 N4 DC U 13 O6 DG V 11 1.58 REMARK 500 N3 DC U 13 N1 DG V 11 1.77 REMARK 500 O2 DC U 13 N2 DG V 11 1.90 REMARK 500 NZ LYS B 149 OE2 GLU C 46 2.08 REMARK 500 OD1 ASP A 113 NH2 ARG A 123 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT U 22 O3' DA U 23 P -0.092 REMARK 500 DA V 2 O3' DT V 3 P -0.078 REMARK 500 DA V 12 O3' DA V 12 C3' -0.046 REMARK 500 DC X 19 O3' DT X 20 P -0.098 REMARK 500 DT X 22 O3' DT X 22 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT U 9 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT V 9 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC V 19 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA X 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC X 11 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT X 22 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA Y 8 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT Y 9 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA Y 10 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG Y 11 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC Y 19 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 74 71.12 57.87 REMARK 500 ALA A 180 32.03 -68.27 REMARK 500 GLN B 74 74.39 57.79 REMARK 500 GLN C 74 71.16 53.69 REMARK 500 LEU C 163 7.85 -64.91 REMARK 500 ALA C 180 26.47 -70.46 REMARK 500 GLN D 74 72.18 57.25 REMARK 500 HIS D 156 -66.80 -109.77 REMARK 500 ALA D 180 25.41 -68.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 6C2S A 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C2S U 1 23 PDB 6C2S 6C2S 1 23 DBREF 6C2S B 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C2S V 1 23 PDB 6C2S 6C2S 1 23 DBREF 6C2S C 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C2S X 1 23 PDB 6C2S 6C2S 1 23 DBREF 6C2S D 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C2S Y 1 23 PDB 6C2S 6C2S 1 23 SEQADV 6C2S SER A -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S GLY A -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER A 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER B -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S GLY B -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER B 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER C -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S GLY C -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER C 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER D -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S GLY D -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C2S SER D 0 UNP Q6N8V9 EXPRESSION TAG SEQRES 1 A 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 A 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 A 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 A 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 A 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 A 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 A 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 A 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 A 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 A 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 A 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 A 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 A 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 A 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 A 186 ALA ARG GLU PHE SEQRES 1 U 23 DT DA DT DT DG DT DT DA DT DA DC DT DC SEQRES 2 U 23 DT DA DT DA DA DC DT DA DT DA SEQRES 1 B 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 B 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 B 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 B 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 B 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 B 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 B 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 B 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 B 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 B 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 B 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 B 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 B 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 B 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 B 186 ALA ARG GLU PHE SEQRES 1 V 23 DT DA DT DA DG DT DT DA DT DA DG DA DG SEQRES 2 V 23 DT DA DT DA DA DC DA DA DT DA SEQRES 1 C 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 C 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 C 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 C 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 C 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 C 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 C 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 C 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 C 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 C 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 C 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 C 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 C 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 C 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 C 186 ALA ARG GLU PHE SEQRES 1 X 23 DT DA DT DT DG DT DT DA DT DA DC DT DC SEQRES 2 X 23 DT DA DT DA DA DC DT DA DT DA SEQRES 1 D 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 D 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 D 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 D 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 D 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 D 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 D 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 D 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 D 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 D 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 D 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 D 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 D 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 D 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 D 186 ALA ARG GLU PHE SEQRES 1 Y 23 DT DA DT DA DG DT DT DA DT DA DG DA DG SEQRES 2 Y 23 DT DA DT DA DA DC DA DA DT DA FORMUL 9 HOH *27(H2 O) HELIX 1 AA1 MET A 44 GLU A 49 5 6 HELIX 2 AA2 LEU A 50 ALA A 71 1 22 HELIX 3 AA3 THR A 76 ASN A 89 1 14 HELIX 4 AA4 ASN A 93 LEU A 101 1 9 HELIX 5 AA5 LEU A 104 ARG A 118 1 15 HELIX 6 AA6 THR A 138 HIS A 156 1 19 HELIX 7 AA7 HIS A 156 LEU A 164 1 9 HELIX 8 AA8 GLY A 165 ALA A 180 1 16 HELIX 9 AA9 MET B 44 GLU B 49 5 6 HELIX 10 AB1 LEU B 50 ALA B 71 1 22 HELIX 11 AB2 THR B 76 ASN B 89 1 14 HELIX 12 AB3 ASN B 93 GLY B 102 1 10 HELIX 13 AB4 LEU B 104 ARG B 118 1 15 HELIX 14 AB5 THR B 138 HIS B 156 1 19 HELIX 15 AB6 HIS B 156 LEU B 164 1 9 HELIX 16 AB7 GLY B 165 ALA B 180 1 16 HELIX 17 AB8 MET C 44 GLU C 49 5 6 HELIX 18 AB9 LEU C 50 ALA C 71 1 22 HELIX 19 AC1 THR C 76 ASN C 89 1 14 HELIX 20 AC2 GLN C 94 LEU C 101 1 8 HELIX 21 AC3 LEU C 104 ARG C 118 1 15 HELIX 22 AC4 THR C 138 HIS C 156 1 19 HELIX 23 AC5 HIS C 156 LEU C 163 1 8 HELIX 24 AC6 GLY C 165 ALA C 180 1 16 HELIX 25 AC7 MET D 44 GLU D 49 5 6 HELIX 26 AC8 LEU D 50 VAL D 70 1 21 HELIX 27 AC9 ALA D 71 GLN D 74 5 4 HELIX 28 AD1 THR D 76 ASN D 89 1 14 HELIX 29 AD2 GLN D 94 GLY D 102 1 9 HELIX 30 AD3 LEU D 104 ARG D 118 1 15 HELIX 31 AD4 THR D 138 HIS D 156 1 19 HELIX 32 AD5 HIS D 156 LEU D 164 1 9 HELIX 33 AD6 GLY D 165 ALA D 180 1 16 SHEET 1 AA1 2 CYS A 121 ARG A 125 0 SHEET 2 AA1 2 HIS A 133 LEU A 137 -1 O ILE A 134 N THR A 124 SHEET 1 AA2 2 CYS B 121 ARG B 125 0 SHEET 2 AA2 2 HIS B 133 LEU B 137 -1 O ILE B 134 N THR B 124 SHEET 1 AA3 3 ARG C 92 ASN C 93 0 SHEET 2 AA3 3 HIS C 133 LEU C 137 -1 O LEU C 135 N ARG C 92 SHEET 3 AA3 3 CYS C 121 ARG C 125 -1 N VAL C 122 O MET C 136 SHEET 1 AA4 3 ARG D 92 ASN D 93 0 SHEET 2 AA4 3 HIS D 133 LEU D 137 -1 O LEU D 135 N ARG D 92 SHEET 3 AA4 3 CYS D 121 ARG D 125 -1 N THR D 124 O ILE D 134 CRYST1 135.580 58.750 168.090 90.00 105.02 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007376 0.000000 0.001978 0.00000 SCALE2 0.000000 0.017021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006159 0.00000