HEADER TRANSCRIPTION/INHIBITOR 10-JAN-18 6C3N TITLE CRYSTAL STRUCTURE OF BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 7CC5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN-PROTEIN INTERACTION, TRANSCRIPTION-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.LINHARES,H.CHENG,F.XUE,T.CIERPICKI REVDAT 3 04-OCT-23 6C3N 1 REMARK REVDAT 2 31-JUL-19 6C3N 1 JRNL REVDAT 1 16-JAN-19 6C3N 0 JRNL AUTH H.CHENG,B.M.LINHARES,W.YU,M.G.CARDENAS,Y.AI,W.JIANG, JRNL AUTH 2 A.WINKLER,S.COHEN,A.MELNICK,A.MACKERELL JR.,T.CIERPICKI, JRNL AUTH 3 F.XUE JRNL TITL IDENTIFICATION OF THIOUREA-BASED INHIBITORS OF THE B-CELL JRNL TITL 2 LYMPHOMA 6 BTB DOMAIN VIA NMR-BASED FRAGMENT SCREENING AND JRNL TITL 3 COMPUTER-AIDED DRUG DESIGN. JRNL REF J.MED.CHEM. V. 61 7573 2018 JRNL REFN ISSN 0022-2623 JRNL PMID 29969259 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00040 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.375 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 10161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.059 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6426 - 4.0174 0.82 2444 127 0.1715 0.2149 REMARK 3 2 4.0174 - 3.1894 0.81 2291 126 0.2020 0.2478 REMARK 3 3 3.1894 - 2.7864 0.86 2415 132 0.2491 0.3608 REMARK 3 4 2.7864 - 2.5317 0.89 2497 129 0.2804 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.396 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2003 REMARK 3 ANGLE : 0.675 2703 REMARK 3 CHIRALITY : 0.044 323 REMARK 3 PLANARITY : 0.003 341 REMARK 3 DIHEDRAL : 13.008 1219 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9374 -48.9433 16.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.5980 REMARK 3 T33: 0.4219 T12: 0.0740 REMARK 3 T13: 0.0336 T23: 0.1319 REMARK 3 L TENSOR REMARK 3 L11: 6.8515 L22: 8.5957 REMARK 3 L33: 8.9027 L12: -5.4289 REMARK 3 L13: -1.3692 L23: 2.9035 REMARK 3 S TENSOR REMARK 3 S11: -0.6945 S12: -0.9383 S13: -0.0184 REMARK 3 S21: 0.2726 S22: 0.6634 S23: -0.8859 REMARK 3 S31: 0.8900 S32: 1.3316 S33: 0.1270 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4170 -31.6161 21.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.3468 T22: 0.3762 REMARK 3 T33: 0.2457 T12: 0.0209 REMARK 3 T13: 0.0131 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.6055 L22: 6.3746 REMARK 3 L33: 5.2009 L12: 2.2581 REMARK 3 L13: 0.1157 L23: -0.8582 REMARK 3 S TENSOR REMARK 3 S11: -0.1645 S12: -0.2672 S13: -0.2260 REMARK 3 S21: 0.0798 S22: 0.3006 S23: -0.1416 REMARK 3 S31: 0.6765 S32: 0.2520 S33: 0.0231 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3920 -10.5365 19.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.3324 REMARK 3 T33: 0.4841 T12: -0.0734 REMARK 3 T13: -0.0878 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.6238 L22: 4.2718 REMARK 3 L33: 6.5046 L12: -3.8769 REMARK 3 L13: -4.5756 L23: 3.5239 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.4868 S13: 0.4412 REMARK 3 S21: -0.6328 S22: 0.2493 S23: -0.2003 REMARK 3 S31: -0.9935 S32: 0.4233 S33: -0.2814 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9734 -18.8854 19.3506 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.4286 REMARK 3 T33: 0.3236 T12: -0.0214 REMARK 3 T13: 0.0163 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 5.1091 L22: 8.5582 REMARK 3 L33: 6.3524 L12: -4.8936 REMARK 3 L13: 3.2326 L23: -1.3334 REMARK 3 S TENSOR REMARK 3 S11: 0.1802 S12: -0.5132 S13: 0.1179 REMARK 3 S21: -0.1749 S22: -0.0674 S23: 0.4247 REMARK 3 S31: 0.3034 S32: -0.1761 S33: -0.0833 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5545 -14.2614 10.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.6282 T22: 0.4497 REMARK 3 T33: 0.4516 T12: 0.0683 REMARK 3 T13: 0.0154 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 5.4454 L22: 5.1974 REMARK 3 L33: 4.9266 L12: 5.3238 REMARK 3 L13: 5.1785 L23: 5.0640 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.4212 S13: -0.5160 REMARK 3 S21: -0.3108 S22: -0.2776 S23: -0.2322 REMARK 3 S31: 0.6602 S32: 0.5560 S33: 0.2189 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8844 -11.3654 28.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.3545 T22: 0.3748 REMARK 3 T33: 0.3638 T12: 0.0420 REMARK 3 T13: 0.0691 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 1.4070 L22: 9.6550 REMARK 3 L33: 5.9640 L12: 2.6438 REMARK 3 L13: 0.7012 L23: -3.2137 REMARK 3 S TENSOR REMARK 3 S11: 0.1644 S12: -0.1719 S13: 0.2421 REMARK 3 S21: 0.5626 S22: 0.0661 S23: -0.0779 REMARK 3 S31: -0.3281 S32: 0.0762 S33: -0.1933 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7106 -19.5955 36.1943 REMARK 3 T TENSOR REMARK 3 T11: 0.6585 T22: 0.3516 REMARK 3 T33: 0.3649 T12: 0.1337 REMARK 3 T13: -0.0140 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 6.4233 L22: 3.7568 REMARK 3 L33: 5.3281 L12: -3.7534 REMARK 3 L13: -2.5405 L23: 2.4684 REMARK 3 S TENSOR REMARK 3 S11: -0.5509 S12: -0.4936 S13: 0.8441 REMARK 3 S21: 0.7274 S22: 1.0452 S23: -0.3433 REMARK 3 S31: 0.6748 S32: 1.4618 S33: -0.2164 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1962 -14.6585 33.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.4136 T22: 0.3362 REMARK 3 T33: 0.3571 T12: 0.0932 REMARK 3 T13: 0.0480 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 5.3991 L22: 8.1615 REMARK 3 L33: 6.3596 L12: 2.9697 REMARK 3 L13: 1.0262 L23: 5.6513 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.4436 S13: -0.2459 REMARK 3 S21: 0.7546 S22: -0.2924 S23: -0.1638 REMARK 3 S31: 0.2683 S32: -1.0587 S33: 0.2070 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2952 -21.6793 41.7028 REMARK 3 T TENSOR REMARK 3 T11: 0.7696 T22: 0.4151 REMARK 3 T33: 0.5005 T12: -0.0798 REMARK 3 T13: 0.1296 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.4131 L22: 7.6675 REMARK 3 L33: 5.9260 L12: -2.7290 REMARK 3 L13: -4.3214 L23: 2.7310 REMARK 3 S TENSOR REMARK 3 S11: -1.0622 S12: -0.0408 S13: -0.5421 REMARK 3 S21: 1.1411 S22: -0.2180 S23: 0.9558 REMARK 3 S31: 1.1743 S32: -0.7394 S33: 0.9659 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1444 -29.4020 23.5235 REMARK 3 T TENSOR REMARK 3 T11: 0.4670 T22: 0.2830 REMARK 3 T33: 0.4028 T12: -0.0223 REMARK 3 T13: 0.0667 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.1101 L22: 5.4083 REMARK 3 L33: 9.0399 L12: -1.2574 REMARK 3 L13: 1.1952 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.2451 S13: -0.7740 REMARK 3 S21: 0.6461 S22: 0.2317 S23: 0.2963 REMARK 3 S31: -0.2591 S32: -0.3789 S33: -0.0120 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9773 -29.1572 5.9474 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.3406 REMARK 3 T33: 0.2871 T12: -0.0349 REMARK 3 T13: 0.0532 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.3903 L22: 5.0317 REMARK 3 L33: 6.5438 L12: -1.9039 REMARK 3 L13: -0.2500 L23: 0.3325 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.6910 S13: 0.1940 REMARK 3 S21: 0.3375 S22: -0.3158 S23: 0.1484 REMARK 3 S31: 0.0866 S32: 0.0559 S33: 0.2326 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4877 -23.6757 5.5636 REMARK 3 T TENSOR REMARK 3 T11: 0.4444 T22: 0.4268 REMARK 3 T33: 0.3667 T12: -0.0172 REMARK 3 T13: 0.0438 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 5.4894 L22: 5.7087 REMARK 3 L33: 7.8727 L12: 0.6042 REMARK 3 L13: -1.6817 L23: -4.3993 REMARK 3 S TENSOR REMARK 3 S11: 0.1353 S12: 0.2458 S13: 0.5130 REMARK 3 S21: 0.7478 S22: -0.0667 S23: -0.0833 REMARK 3 S31: -0.7308 S32: 0.0789 S33: -0.0472 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1671 -36.3111 -1.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.5288 T22: 0.4974 REMARK 3 T33: 0.3665 T12: 0.0820 REMARK 3 T13: 0.0977 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 7.8291 L22: 2.3688 REMARK 3 L33: 4.0772 L12: -2.8774 REMARK 3 L13: 1.6956 L23: 1.5811 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: 0.6310 S13: -0.5259 REMARK 3 S21: -1.5649 S22: -0.2865 S23: -0.5297 REMARK 3 S31: 1.0177 S32: 0.3970 S33: -0.1146 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8007 -39.8885 8.4638 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.3011 REMARK 3 T33: 0.3923 T12: 0.0048 REMARK 3 T13: 0.0925 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 4.3112 L22: 8.8382 REMARK 3 L33: 9.2226 L12: -2.3936 REMARK 3 L13: -4.6305 L23: -3.0774 REMARK 3 S TENSOR REMARK 3 S11: -0.2830 S12: 0.6206 S13: -0.6973 REMARK 3 S21: -0.9521 S22: -0.3809 S23: -0.0737 REMARK 3 S31: 0.8666 S32: -0.5850 S33: 0.6957 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6593 -45.2545 13.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.3018 T22: 0.3805 REMARK 3 T33: 0.4406 T12: -0.0386 REMARK 3 T13: 0.0058 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.9634 L22: 6.1792 REMARK 3 L33: 6.7517 L12: 1.5340 REMARK 3 L13: 1.9593 L23: -0.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.2393 S12: -0.2544 S13: 0.1727 REMARK 3 S21: -0.5847 S22: 0.1257 S23: 0.2841 REMARK 3 S31: 0.2635 S32: -0.5289 S33: -0.2242 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2914 -42.7294 7.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.5386 T22: 0.4543 REMARK 3 T33: 0.3326 T12: 0.1044 REMARK 3 T13: 0.0791 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 6.6277 L22: 5.4522 REMARK 3 L33: 6.7454 L12: -0.1904 REMARK 3 L13: -1.2522 L23: -4.8172 REMARK 3 S TENSOR REMARK 3 S11: -0.2976 S12: -0.0651 S13: -0.2828 REMARK 3 S21: -0.7219 S22: 0.0327 S23: -0.8173 REMARK 3 S31: 1.4591 S32: 0.8740 S33: 0.2646 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1R29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM FORMATE, .1 M TRIS, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.05150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.53250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.05150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.53250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ASP B 119 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -102.69 53.30 REMARK 500 MET A 114 79.91 -117.53 REMARK 500 SER B 39 -108.62 48.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EHY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EHY B 201 DBREF 6C3N A 1 129 UNP P41182 BCL6_HUMAN 1 129 DBREF 6C3N B 1 129 UNP P41182 BCL6_HUMAN 1 129 SEQADV 6C3N GLY A -1 UNP P41182 EXPRESSION TAG SEQADV 6C3N SER A 0 UNP P41182 EXPRESSION TAG SEQADV 6C3N GLN A 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 6C3N ARG A 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 6C3N ASN A 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 6C3N VAL A 99 UNP P41182 GLU 99 ENGINEERED MUTATION SEQADV 6C3N GLY B -1 UNP P41182 EXPRESSION TAG SEQADV 6C3N SER B 0 UNP P41182 EXPRESSION TAG SEQADV 6C3N GLN B 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 6C3N ARG B 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 6C3N ASN B 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 6C3N VAL B 99 UNP P41182 GLU 99 ENGINEERED MUTATION SEQRES 1 A 131 GLY SER MET ALA SER PRO ALA ASP SER GLN ILE GLN PHE SEQRES 2 A 131 THR ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG SEQRES 3 A 131 LEU ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL SEQRES 4 A 131 VAL SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU SEQRES 5 A 131 MET ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP SEQRES 6 A 131 GLN LEU LYS ARG ASN LEU SER VAL ILE ASN LEU ASP PRO SEQRES 7 A 131 GLU ILE ASN PRO GLU GLY PHE ASN ILE LEU LEU ASP PHE SEQRES 8 A 131 MET TYR THR SER ARG LEU ASN LEU ARG VAL GLY ASN ILE SEQRES 9 A 131 MET ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU SEQRES 10 A 131 HIS VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER SEQRES 11 A 131 GLU SEQRES 1 B 131 GLY SER MET ALA SER PRO ALA ASP SER GLN ILE GLN PHE SEQRES 2 B 131 THR ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG SEQRES 3 B 131 LEU ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL SEQRES 4 B 131 VAL SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU SEQRES 5 B 131 MET ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP SEQRES 6 B 131 GLN LEU LYS ARG ASN LEU SER VAL ILE ASN LEU ASP PRO SEQRES 7 B 131 GLU ILE ASN PRO GLU GLY PHE ASN ILE LEU LEU ASP PHE SEQRES 8 B 131 MET TYR THR SER ARG LEU ASN LEU ARG VAL GLY ASN ILE SEQRES 9 B 131 MET ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU SEQRES 10 B 131 HIS VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER SEQRES 11 B 131 GLU HET EHY A 201 18 HET EHY B 201 18 HETNAM EHY N-(2-PHENYLETHYL)-N'-PYRIDIN-3-YLTHIOUREA FORMUL 3 EHY 2(C14 H15 N3 S) FORMUL 5 HOH *86(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 ASN A 79 TYR A 91 1 13 HELIX 5 AA5 ASN A 101 GLN A 113 1 13 HELIX 6 AA6 MET A 114 ALA A 127 1 14 HELIX 7 AA7 ARG B 13 ASP B 29 1 17 HELIX 8 AA8 HIS B 46 SER B 54 1 9 HELIX 9 AA9 SER B 54 ASP B 63 1 10 HELIX 10 AB1 ASN B 79 SER B 93 1 15 HELIX 11 AB2 ASN B 101 LEU B 112 1 12 HELIX 12 AB3 MET B 114 SER B 128 1 15 SHEET 1 AA1 2 ILE A 9 GLN A 10 0 SHEET 2 AA1 2 ARG B 94 LEU B 95 -1 O LEU B 95 N ILE A 9 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SHEET 1 AA3 2 ARG A 94 LEU A 95 0 SHEET 2 AA3 2 ILE B 9 GLN B 10 -1 O ILE B 9 N LEU A 95 SHEET 1 AA4 3 GLU B 41 ALA B 45 0 SHEET 2 AA4 3 VAL B 34 VAL B 38 -1 N ILE B 36 O PHE B 43 SHEET 3 AA4 3 VAL B 71 ASN B 73 1 O ILE B 72 N VAL B 37 SITE 1 AC1 7 ARG A 24 MET A 51 GLY A 55 TYR A 58 SITE 2 AC1 7 ASN B 21 LEU B 25 EHY B 201 SITE 1 AC2 8 ASN A 21 ARG A 24 EHY A 201 ARG B 28 SITE 2 AC2 8 MET B 51 GLY B 55 TYR B 58 HOH B 343 CRYST1 34.103 85.065 117.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008493 0.00000