HEADER VIRAL PROTEIN 11-JAN-18 6C44 TITLE ZIKA VIRUS CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-104; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ZIKA VIRUS, CAPSID, RNA BINDING PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.MORANDO,G.M.BARBOSA,C.CRUZ-OLIVEIRA,A.T.DA POIAN,F.C.L.ALMEIDA REVDAT 5 14-JUN-23 6C44 1 REMARK REVDAT 4 08-JAN-20 6C44 1 REMARK REVDAT 3 31-JUL-19 6C44 1 JRNL REMARK REVDAT 2 17-APR-19 6C44 1 REMARK REVDAT 1 16-JAN-19 6C44 0 JRNL AUTH M.A.MORANDO,G.M.BARBOSA,C.CRUZ-OLIVEIRA,A.T.DA POIAN, JRNL AUTH 2 F.C.L.ALMEIDA JRNL TITL DYNAMICS OF ZIKA VIRUS CAPSID PROTEIN IN SOLUTION: THE JRNL TITL 2 PROPERTIES AND EXPOSURE OF THE HYDROPHOBIC CLEFT ARE JRNL TITL 3 CONTROLLED BY THE ALPHA-HELIX 1 SEQUENCE. JRNL REF BIOCHEMISTRY V. 58 2488 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31034208 JRNL DOI 10.1021/ACS.BIOCHEM.9B00194 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WITH EXPLICIT WATER SHELL REMARK 4 REMARK 4 6C44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231995. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.2323 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-99% 13C; U-99% 15N] REMARK 210 ZIKVC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HN(CA)CO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 2D 1H- REMARK 210 15N HSQC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CCPNMR 2.4.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 PHE A 11 REMARK 465 ARG A 12 REMARK 465 ILE A 13 REMARK 465 VAL A 14 REMARK 465 ASN A 15 REMARK 465 MET A 16 REMARK 465 LEU A 17 REMARK 465 LYS A 18 REMARK 465 ARG A 19 REMARK 465 GLY A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 ARG A 23 REMARK 465 VAL A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 PHE A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 LYS A 31 REMARK 465 ARG A 32 REMARK 465 LEU A 33 REMARK 465 PRO A 34 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 GLY B 10 REMARK 465 PHE B 11 REMARK 465 ARG B 12 REMARK 465 ILE B 13 REMARK 465 VAL B 14 REMARK 465 ASN B 15 REMARK 465 MET B 16 REMARK 465 LEU B 17 REMARK 465 LYS B 18 REMARK 465 ARG B 19 REMARK 465 GLY B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 ARG B 23 REMARK 465 VAL B 24 REMARK 465 SER B 25 REMARK 465 PRO B 26 REMARK 465 PHE B 27 REMARK 465 GLY B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 30 REMARK 465 LYS B 31 REMARK 465 ARG B 32 REMARK 465 LEU B 33 REMARK 465 PRO B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 100 26.51 46.76 REMARK 500 1 GLU B 100 25.91 46.90 REMARK 500 2 PRO A 43 -171.56 -69.48 REMARK 500 2 LYS A 60 103.42 66.88 REMARK 500 2 LYS A 74 -65.68 51.01 REMARK 500 2 PRO B 43 -171.61 -69.79 REMARK 500 2 LYS B 60 103.67 66.62 REMARK 500 2 LYS B 74 -65.76 50.92 REMARK 500 3 LYS A 60 104.19 65.82 REMARK 500 3 LYS A 99 -57.80 -132.20 REMARK 500 3 GLU A 100 -43.29 -169.70 REMARK 500 3 LYS B 60 104.51 65.69 REMARK 500 3 LYS B 99 -57.82 -131.95 REMARK 500 3 GLU B 100 -43.31 -169.64 REMARK 500 4 LYS A 60 83.74 57.32 REMARK 500 4 PRO A 61 -82.32 -40.84 REMARK 500 4 LYS A 99 -76.24 -109.34 REMARK 500 4 GLU A 100 13.24 -157.02 REMARK 500 4 LYS B 60 83.99 57.10 REMARK 500 4 PRO B 61 -82.66 -40.83 REMARK 500 4 LYS B 99 -75.76 -109.87 REMARK 500 4 GLU B 100 13.68 -157.52 REMARK 500 5 LYS A 60 92.19 66.99 REMARK 500 5 ARG A 103 -92.38 65.65 REMARK 500 5 LYS B 60 92.36 67.00 REMARK 500 5 ARG B 103 -92.88 65.64 REMARK 500 6 ALA A 58 -158.20 65.87 REMARK 500 6 ILE A 59 141.15 76.67 REMARK 500 6 LYS A 74 -60.87 49.72 REMARK 500 6 LYS A 99 -48.69 -157.87 REMARK 500 6 GLU A 100 -42.05 72.85 REMARK 500 6 ALA B 58 -158.17 65.68 REMARK 500 6 ILE B 59 141.29 76.65 REMARK 500 6 LYS B 74 -61.15 49.67 REMARK 500 6 LYS B 99 -49.25 -158.00 REMARK 500 6 GLU B 100 -41.95 73.20 REMARK 500 7 ILE A 59 50.79 -118.28 REMARK 500 7 LYS A 60 105.31 174.55 REMARK 500 7 LYS A 99 -13.38 69.71 REMARK 500 7 LYS A 101 89.73 63.02 REMARK 500 7 ILE B 59 50.85 -117.60 REMARK 500 7 LYS B 60 105.38 174.62 REMARK 500 7 LYS B 99 -13.40 69.59 REMARK 500 7 LYS B 101 89.80 62.78 REMARK 500 8 LYS A 60 98.41 68.27 REMARK 500 8 LYS A 74 -71.45 62.19 REMARK 500 8 LYS A 99 -49.44 174.62 REMARK 500 8 GLU A 100 -66.16 177.37 REMARK 500 8 LYS A 101 -38.05 161.33 REMARK 500 8 LYS B 60 98.44 68.62 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30397 RELATED DB: BMRB REMARK 900 ZIKA VIRUS CAPSID PROTEIN DBREF1 6C44 A 1 104 UNP A0A1V0E2H9_ZIKV DBREF2 6C44 A A0A1V0E2H9 1 104 DBREF1 6C44 B 1 104 UNP A0A1V0E2H9_ZIKV DBREF2 6C44 B A0A1V0E2H9 1 104 SEQRES 1 A 104 MET LYS ASN PRO LYS LYS LYS SER GLY GLY PHE ARG ILE SEQRES 2 A 104 VAL ASN MET LEU LYS ARG GLY VAL ALA ARG VAL SER PRO SEQRES 3 A 104 PHE GLY GLY LEU LYS ARG LEU PRO ALA GLY LEU LEU LEU SEQRES 4 A 104 GLY HIS GLY PRO ILE ARG MET VAL LEU ALA ILE LEU ALA SEQRES 5 A 104 PHE LEU ARG PHE THR ALA ILE LYS PRO SER LEU GLY LEU SEQRES 6 A 104 ILE ASN ARG TRP GLY SER VAL GLY LYS LYS GLU ALA MET SEQRES 7 A 104 GLU ILE ILE LYS LYS PHE LYS LYS ASP LEU ALA ALA MET SEQRES 8 A 104 LEU ARG ILE ILE ASN ALA ARG LYS GLU LYS LYS ARG ARG SEQRES 1 B 104 MET LYS ASN PRO LYS LYS LYS SER GLY GLY PHE ARG ILE SEQRES 2 B 104 VAL ASN MET LEU LYS ARG GLY VAL ALA ARG VAL SER PRO SEQRES 3 B 104 PHE GLY GLY LEU LYS ARG LEU PRO ALA GLY LEU LEU LEU SEQRES 4 B 104 GLY HIS GLY PRO ILE ARG MET VAL LEU ALA ILE LEU ALA SEQRES 5 B 104 PHE LEU ARG PHE THR ALA ILE LYS PRO SER LEU GLY LEU SEQRES 6 B 104 ILE ASN ARG TRP GLY SER VAL GLY LYS LYS GLU ALA MET SEQRES 7 B 104 GLU ILE ILE LYS LYS PHE LYS LYS ASP LEU ALA ALA MET SEQRES 8 B 104 LEU ARG ILE ILE ASN ALA ARG LYS GLU LYS LYS ARG ARG HELIX 1 AA1 ALA A 35 GLY A 40 1 6 HELIX 2 AA2 PRO A 43 THR A 57 1 15 HELIX 3 AA3 SER A 62 GLY A 70 1 9 HELIX 4 AA4 GLY A 73 LYS A 99 1 27 HELIX 5 AA5 GLY B 36 GLY B 40 1 5 HELIX 6 AA6 PRO B 43 THR B 57 1 15 HELIX 7 AA7 SER B 62 GLY B 70 1 9 HELIX 8 AA8 GLY B 73 LYS B 99 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1