data_6C52 # _entry.id 6C52 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6C52 WWPDB D_1000232048 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C52 _pdbx_database_status.recvd_initial_deposition_date 2018-01-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, L.' 1 ? 'Zhang, S.Q.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 870 _citation.page_last 875 _citation.title 'Designed peptides that assemble into cross-alpha amyloid-like structures.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0105-5 _citation.pdbx_database_id_PubMed 30061717 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, S.Q.' 1 0000-0001-5853-592X primary 'Huang, H.' 2 0000-0003-2331-6238 primary 'Yang, J.' 3 0000-0003-4844-2492 primary 'Kratochvil, H.T.' 4 0000-0001-8039-6823 primary 'Lolicato, M.' 5 0000-0002-2022-7961 primary 'Liu, Y.' 6 0000-0002-2253-3698 primary 'Shu, X.' 7 ? primary 'Liu, L.' 8 0000-0003-0514-281X primary 'DeGrado, W.F.' 9 0000-0003-4745-263X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6C52 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.450 _cell.length_a_esd ? _cell.length_b 75.570 _cell.length_b_esd ? _cell.length_c 27.990 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cross-alpha Amyloid-like Structure alphaTet' 3124.575 4 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)SKLEELRRKLQEAEHKARELQEKWG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XSKLEELRRKLQEAEHKARELQEKWGX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 LYS n 1 4 LEU n 1 5 GLU n 1 6 GLU n 1 7 LEU n 1 8 ARG n 1 9 ARG n 1 10 LYS n 1 11 LEU n 1 12 GLN n 1 13 GLU n 1 14 ALA n 1 15 GLU n 1 16 HIS n 1 17 LYS n 1 18 ALA n 1 19 ARG n 1 20 GLU n 1 21 LEU n 1 22 GLN n 1 23 GLU n 1 24 LYS n 1 25 TRP n 1 26 GLY n 1 27 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6C52 _struct_ref.pdbx_db_accession 6C52 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C52 A 1 ? 27 ? 6C52 0 ? 26 ? 0 26 2 1 6C52 B 1 ? 27 ? 6C52 0 ? 26 ? 0 26 3 1 6C52 C 1 ? 27 ? 6C52 0 ? 26 ? 0 26 4 1 6C52 D 1 ? 27 ? 6C52 0 ? 26 ? 0 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C52 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.0 M Na formate, 0.1 M Na acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11584 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.11584 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6C52 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25538 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.65 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2532 _reflns_shell.percent_possible_all 97.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C52 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.600 _refine.ls_d_res_low 40.185 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13712 _refine.ls_number_reflns_R_free 681 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.62 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1935 _refine.ls_R_factor_R_free 0.2225 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1919 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.00 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.05 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 884 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 977 _refine_hist.d_res_high 1.600 _refine_hist.d_res_low 40.185 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 991 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.887 ? 1316 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.767 ? 652 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 122 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 177 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6000 1.7236 . . 133 2520 98.00 . . . 0.2766 . 0.2126 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7236 1.8970 . . 121 2558 98.00 . . . 0.2378 . 0.2065 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8970 2.1715 . . 133 2573 98.00 . . . 0.2273 . 0.1881 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1715 2.7358 . . 125 2626 99.00 . . . 0.2274 . 0.1822 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7358 40.1978 . . 169 2754 100.00 . . . 0.2075 . 0.1917 . . . . . . . . . . # _struct.entry_id 6C52 _struct.title 'Cross-alpha Amyloid-like Structure alphaTet' _struct.pdbx_descriptor 'Cross-alpha Amyloid-like Structure alphaTet' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C52 _struct_keywords.text 'Protein Design, Cross-alpha Amyloid, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? GLY A 26 ? SER A 1 GLY A 25 1 ? 25 HELX_P HELX_P2 AA2 SER B 2 ? GLY B 26 ? SER B 1 GLY B 25 1 ? 25 HELX_P HELX_P3 AA3 SER C 2 ? GLY C 26 ? SER C 1 GLY C 25 1 ? 25 HELX_P HELX_P4 AA4 SER D 2 ? GLY D 26 ? SER D 1 GLY D 25 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale both ? A GLY 26 C ? ? ? 1_555 A NH2 27 N ? ? A GLY 25 A NH2 26 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B SER 2 N ? ? B ACE 0 B SER 1 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale both ? B GLY 26 C ? ? ? 1_555 B NH2 27 N ? ? B GLY 25 B NH2 26 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C SER 2 N ? ? C ACE 0 C SER 1 1_555 ? ? ? ? ? ? ? 1.338 ? covale6 covale both ? C GLY 26 C ? ? ? 1_555 C NH2 27 N ? ? C GLY 25 C NH2 26 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D SER 2 N ? ? D ACE 0 D SER 1 1_555 ? ? ? ? ? ? ? 1.322 ? covale8 covale both ? D GLY 26 C ? ? ? 1_555 D NH2 27 N ? ? D GLY 25 D NH2 26 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B GOL 101 ? 6 'binding site for residue GOL B 101' AC2 Software B GOL 102 ? 5 'binding site for residue GOL B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 2 ? SER A 1 . ? 1_555 ? 2 AC1 6 LYS A 3 ? LYS A 2 . ? 1_555 ? 3 AC1 6 LEU B 21 ? LEU B 20 . ? 1_555 ? 4 AC1 6 LYS B 24 ? LYS B 23 . ? 1_555 ? 5 AC1 6 TRP B 25 ? TRP B 24 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 204 . ? 1_555 ? 7 AC2 5 LYS A 24 ? LYS A 23 . ? 1_555 ? 8 AC2 5 SER B 2 ? SER B 1 . ? 1_555 ? 9 AC2 5 LYS B 3 ? LYS B 2 . ? 1_555 ? 10 AC2 5 LYS B 24 ? LYS B 23 . ? 3_645 ? 11 AC2 5 HOH H . ? HOH B 205 . ? 1_555 ? # _atom_sites.entry_id 6C52 _atom_sites.fract_transf_matrix[1][1] 0.021075 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013233 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035727 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 GLN 22 21 21 GLN GLN A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 TRP 25 24 24 TRP TRP A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 NH2 27 26 26 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 SER 2 1 1 SER SER B . n B 1 3 LYS 3 2 2 LYS LYS B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 GLU 5 4 4 GLU GLU B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 LEU 7 6 6 LEU LEU B . n B 1 8 ARG 8 7 7 ARG ARG B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 LYS 10 9 9 LYS LYS B . n B 1 11 LEU 11 10 10 LEU LEU B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 GLU 13 12 12 GLU GLU B . n B 1 14 ALA 14 13 13 ALA ALA B . n B 1 15 GLU 15 14 14 GLU GLU B . n B 1 16 HIS 16 15 15 HIS HIS B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 ALA 18 17 17 ALA ALA B . n B 1 19 ARG 19 18 18 ARG ARG B . n B 1 20 GLU 20 19 19 GLU GLU B . n B 1 21 LEU 21 20 20 LEU LEU B . n B 1 22 GLN 22 21 21 GLN GLN B . n B 1 23 GLU 23 22 22 GLU GLU B . n B 1 24 LYS 24 23 23 LYS LYS B . n B 1 25 TRP 25 24 24 TRP TRP B . n B 1 26 GLY 26 25 25 GLY GLY B . n B 1 27 NH2 27 26 26 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 SER 2 1 1 SER SER C . n C 1 3 LYS 3 2 2 LYS LYS C . n C 1 4 LEU 4 3 3 LEU LEU C . n C 1 5 GLU 5 4 4 GLU GLU C . n C 1 6 GLU 6 5 5 GLU GLU C . n C 1 7 LEU 7 6 6 LEU LEU C . n C 1 8 ARG 8 7 7 ARG ARG C . n C 1 9 ARG 9 8 8 ARG ARG C . n C 1 10 LYS 10 9 9 LYS LYS C . n C 1 11 LEU 11 10 10 LEU LEU C . n C 1 12 GLN 12 11 11 GLN GLN C . n C 1 13 GLU 13 12 12 GLU GLU C . n C 1 14 ALA 14 13 13 ALA ALA C . n C 1 15 GLU 15 14 14 GLU GLU C . n C 1 16 HIS 16 15 15 HIS HIS C . n C 1 17 LYS 17 16 16 LYS LYS C . n C 1 18 ALA 18 17 17 ALA ALA C . n C 1 19 ARG 19 18 18 ARG ARG C . n C 1 20 GLU 20 19 19 GLU GLU C . n C 1 21 LEU 21 20 20 LEU LEU C . n C 1 22 GLN 22 21 21 GLN GLN C . n C 1 23 GLU 23 22 22 GLU GLU C . n C 1 24 LYS 24 23 23 LYS LYS C . n C 1 25 TRP 25 24 24 TRP TRP C . n C 1 26 GLY 26 25 25 GLY GLY C . n C 1 27 NH2 27 26 26 NH2 NH2 C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 SER 2 1 1 SER SER D . n D 1 3 LYS 3 2 2 LYS LYS D . n D 1 4 LEU 4 3 3 LEU LEU D . n D 1 5 GLU 5 4 4 GLU GLU D . n D 1 6 GLU 6 5 5 GLU GLU D . n D 1 7 LEU 7 6 6 LEU LEU D . n D 1 8 ARG 8 7 7 ARG ARG D . n D 1 9 ARG 9 8 8 ARG ARG D . n D 1 10 LYS 10 9 9 LYS LYS D . n D 1 11 LEU 11 10 10 LEU LEU D . n D 1 12 GLN 12 11 11 GLN GLN D . n D 1 13 GLU 13 12 12 GLU GLU D . n D 1 14 ALA 14 13 13 ALA ALA D . n D 1 15 GLU 15 14 14 GLU GLU D . n D 1 16 HIS 16 15 15 HIS HIS D . n D 1 17 LYS 17 16 16 LYS LYS D . n D 1 18 ALA 18 17 17 ALA ALA D . n D 1 19 ARG 19 18 18 ARG ARG D . n D 1 20 GLU 20 19 19 GLU GLU D . n D 1 21 LEU 21 20 20 LEU LEU D . n D 1 22 GLN 22 21 21 GLN GLN D . n D 1 23 GLU 23 22 22 GLU GLU D . n D 1 24 LYS 24 23 23 LYS LYS D . n D 1 25 TRP 25 24 24 TRP TRP D . n D 1 26 GLY 26 25 25 GLY GLY D . n D 1 27 NH2 27 26 26 NH2 NH2 D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL 1 101 1 GOL GOL B . F 2 GOL 1 102 2 GOL GOL B . G 3 HOH 1 101 5 HOH HOH A . G 3 HOH 2 102 65 HOH HOH A . G 3 HOH 3 103 66 HOH HOH A . G 3 HOH 4 104 60 HOH HOH A . G 3 HOH 5 105 70 HOH HOH A . G 3 HOH 6 106 78 HOH HOH A . G 3 HOH 7 107 74 HOH HOH A . G 3 HOH 8 108 80 HOH HOH A . G 3 HOH 9 109 11 HOH HOH A . G 3 HOH 10 110 67 HOH HOH A . G 3 HOH 11 111 64 HOH HOH A . H 3 HOH 1 201 75 HOH HOH B . H 3 HOH 2 202 51 HOH HOH B . H 3 HOH 3 203 40 HOH HOH B . H 3 HOH 4 204 59 HOH HOH B . H 3 HOH 5 205 54 HOH HOH B . H 3 HOH 6 206 58 HOH HOH B . H 3 HOH 7 207 48 HOH HOH B . H 3 HOH 8 208 24 HOH HOH B . H 3 HOH 9 209 43 HOH HOH B . H 3 HOH 10 210 37 HOH HOH B . H 3 HOH 11 211 17 HOH HOH B . H 3 HOH 12 212 15 HOH HOH B . H 3 HOH 13 213 27 HOH HOH B . H 3 HOH 14 214 73 HOH HOH B . H 3 HOH 15 215 21 HOH HOH B . H 3 HOH 16 216 7 HOH HOH B . H 3 HOH 17 217 25 HOH HOH B . H 3 HOH 18 218 68 HOH HOH B . H 3 HOH 19 219 47 HOH HOH B . H 3 HOH 20 220 22 HOH HOH B . H 3 HOH 21 221 2 HOH HOH B . H 3 HOH 22 222 72 HOH HOH B . H 3 HOH 23 223 57 HOH HOH B . H 3 HOH 24 224 61 HOH HOH B . H 3 HOH 25 225 32 HOH HOH B . H 3 HOH 26 226 53 HOH HOH B . H 3 HOH 27 227 23 HOH HOH B . I 3 HOH 1 101 41 HOH HOH C . I 3 HOH 2 102 30 HOH HOH C . I 3 HOH 3 103 13 HOH HOH C . I 3 HOH 4 104 71 HOH HOH C . I 3 HOH 5 105 46 HOH HOH C . I 3 HOH 6 106 69 HOH HOH C . I 3 HOH 7 107 29 HOH HOH C . I 3 HOH 8 108 16 HOH HOH C . I 3 HOH 9 109 39 HOH HOH C . I 3 HOH 10 110 79 HOH HOH C . I 3 HOH 11 111 8 HOH HOH C . I 3 HOH 12 112 42 HOH HOH C . I 3 HOH 13 113 19 HOH HOH C . I 3 HOH 14 114 1 HOH HOH C . I 3 HOH 15 115 18 HOH HOH C . I 3 HOH 16 116 6 HOH HOH C . I 3 HOH 17 117 35 HOH HOH C . I 3 HOH 18 118 4 HOH HOH C . I 3 HOH 19 119 38 HOH HOH C . I 3 HOH 20 120 31 HOH HOH C . I 3 HOH 21 121 76 HOH HOH C . I 3 HOH 22 122 77 HOH HOH C . I 3 HOH 23 123 55 HOH HOH C . I 3 HOH 24 124 34 HOH HOH C . I 3 HOH 25 125 56 HOH HOH C . I 3 HOH 26 126 49 HOH HOH C . I 3 HOH 27 127 36 HOH HOH C . J 3 HOH 1 101 63 HOH HOH D . J 3 HOH 2 102 3 HOH HOH D . J 3 HOH 3 103 10 HOH HOH D . J 3 HOH 4 104 14 HOH HOH D . J 3 HOH 5 105 33 HOH HOH D . J 3 HOH 6 106 9 HOH HOH D . J 3 HOH 7 107 20 HOH HOH D . J 3 HOH 8 108 50 HOH HOH D . J 3 HOH 9 109 28 HOH HOH D . J 3 HOH 10 110 52 HOH HOH D . J 3 HOH 11 111 44 HOH HOH D . J 3 HOH 12 112 12 HOH HOH D . J 3 HOH 13 113 45 HOH HOH D . J 3 HOH 14 114 26 HOH HOH D . J 3 HOH 15 115 81 HOH HOH D . J 3 HOH 16 116 62 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6420 ? 1 MORE -40 ? 1 'SSA (A^2)' 6280 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 127 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-15 2 'Structure model' 1 1 2018-08-29 3 'Structure model' 1 2 2019-02-20 4 'Structure model' 1 3 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_assembly_gen 5 3 'Structure model' pdbx_struct_assembly_prop 6 4 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 32.0648 73.4554 3.7741 0.2321 0.2505 0.4651 0.0022 -0.1313 0.1734 1.9767 2.0209 4.4251 -1.2822 1.0856 -0.3811 0.1206 0.6267 0.5678 -0.3311 -0.2500 0.0112 -0.4931 -0.1995 0.1900 'X-RAY DIFFRACTION' 2 ? refined 31.9241 66.1399 5.8813 0.1885 0.1556 0.2114 -0.0005 -0.0655 0.0510 6.6466 2.7461 4.1494 -0.7876 -3.3914 2.9037 0.1073 0.4440 0.3167 -0.4559 0.0312 0.7348 -0.4839 -0.7138 -0.0462 'X-RAY DIFFRACTION' 3 ? refined 29.5007 58.5175 7.3311 0.1142 0.2269 0.2594 -0.0098 -0.0404 0.0341 4.7390 3.1871 4.1371 1.2770 -0.8178 -1.3986 -0.0050 -0.0352 0.1357 -0.1899 0.0980 1.0621 -0.0429 -1.0125 -0.1133 'X-RAY DIFFRACTION' 4 ? refined 30.0831 51.5890 8.2430 0.1186 0.1743 0.1770 -0.0390 0.0600 0.0373 4.0813 5.3675 4.1335 3.7361 1.1315 1.0836 -0.2394 0.2487 0.2440 -0.0514 0.1614 0.9031 -0.0445 -0.5932 -0.0965 'X-RAY DIFFRACTION' 5 ? refined 30.1095 44.7163 10.7863 0.1492 0.1299 0.1062 -0.0360 0.0625 0.0136 9.8146 6.9435 9.2132 -3.9892 -1.2204 3.3739 0.0336 0.3266 0.0541 -0.5710 -0.0069 -0.2141 -0.1769 0.0405 -0.0564 'X-RAY DIFFRACTION' 6 ? refined 36.2076 50.6074 1.4424 0.2711 0.2548 0.1660 -0.0895 0.0361 -0.1234 4.3218 1.9445 6.1715 0.0645 2.5110 -0.9535 0.1400 0.4794 -0.6250 -0.5342 -0.1366 0.1258 0.3742 -0.3533 -0.0029 'X-RAY DIFFRACTION' 7 ? refined 38.2646 57.4536 2.4749 0.2405 0.2440 0.0143 -0.0939 0.0239 -0.0517 0.4413 0.4493 4.8796 0.2109 -0.3092 1.1223 -0.0990 0.2114 -0.0544 -0.3177 0.0344 -0.0033 0.0959 -0.0211 -0.1503 'X-RAY DIFFRACTION' 8 ? refined 41.1650 64.9163 2.6715 0.2710 0.2471 0.0567 -0.0719 -0.0010 -0.0248 7.5635 5.9624 8.2664 -2.6938 0.9724 4.6380 -0.0278 0.7057 -0.2419 -0.6745 0.0962 -0.1026 0.3260 0.4271 -0.1419 'X-RAY DIFFRACTION' 9 ? refined 41.1746 72.3159 3.6023 0.1346 0.1981 0.0972 -0.0461 -0.0348 0.0082 5.6335 6.8215 4.5744 1.8609 3.0544 1.9851 0.0185 0.7527 -0.0705 -0.6946 0.0113 0.4561 0.1961 -0.2183 0.1652 'X-RAY DIFFRACTION' 10 ? refined 42.8799 79.2281 5.7097 0.1245 0.1473 0.1052 -0.0271 -0.0267 0.0271 5.0365 1.5000 7.6439 -1.3731 4.3699 -2.6784 0.0927 -0.0212 0.0048 -0.5683 0.1662 0.2611 0.2885 0.0618 -0.2236 'X-RAY DIFFRACTION' 11 ? refined 42.9104 72.9169 14.2460 0.0783 0.1332 0.0710 0.0228 0.0032 0.0261 4.4126 8.4630 4.4094 -0.9046 -0.4031 5.4199 -0.0507 -0.2001 0.0326 0.4753 0.1899 -0.0760 0.0749 0.0813 -0.1154 'X-RAY DIFFRACTION' 12 ? refined 44.5127 64.5621 14.0874 0.1675 0.1558 0.1581 -0.0034 -0.0703 0.0276 2.7263 4.3363 2.9690 -0.5288 1.4141 2.8010 -0.1094 -0.3434 -0.1905 0.6209 0.2768 -0.4938 0.1314 0.2170 -0.1532 'X-RAY DIFFRACTION' 13 ? refined 45.5529 54.6990 10.7253 0.1044 0.2237 0.3679 -0.0251 0.0348 -0.0328 3.0565 1.3291 6.9165 -1.7459 -1.5310 -0.5497 -0.1132 0.2895 -0.2631 -0.1094 -0.0684 -0.9674 -0.1418 0.8913 0.0178 'X-RAY DIFFRACTION' 14 ? refined 44.8011 45.9179 7.9815 0.4326 0.4248 1.0249 -0.0017 0.0962 -0.2202 0.0812 2.1509 7.1299 -0.4175 0.7598 -3.9156 0.0495 0.4693 -1.6264 -0.3858 0.3247 -0.8219 1.2871 0.7451 -0.2865 'X-RAY DIFFRACTION' 15 ? refined 37.6252 50.1483 17.8766 0.2248 0.1936 0.1076 -0.0336 0.0049 0.0144 8.3087 2.2168 3.4379 0.3328 4.6785 0.2995 0.1195 -0.3796 -0.1608 0.9522 0.0882 -0.0445 -0.0898 0.2040 -0.1333 'X-RAY DIFFRACTION' 16 ? refined 36.2293 56.4890 17.5562 0.3167 0.2291 0.0479 0.0133 0.0871 0.0390 2.2503 0.2590 2.0964 -0.6082 0.9164 0.1552 0.0634 -0.5357 -0.0369 0.4147 -0.0024 0.0938 -0.0218 -0.4543 0.0494 'X-RAY DIFFRACTION' 17 ? refined 33.8196 62.7486 15.5354 0.2445 0.2234 0.2146 0.0237 0.2024 0.0954 2.4142 2.1268 3.0887 0.3322 -0.4109 1.6295 0.0771 -0.2332 0.1543 0.4893 0.0782 0.5218 0.0987 -0.5851 -0.2349 'X-RAY DIFFRACTION' 18 ? refined 32.6363 70.8132 16.5378 0.1693 0.2444 0.4921 0.0291 0.1751 0.1298 2.5533 0.3731 2.4854 0.0421 -0.8335 -0.3431 -0.0385 -0.2763 -0.2073 0.1274 0.0286 0.2654 0.1019 -0.2866 0.0664 'X-RAY DIFFRACTION' 19 ? refined 30.5736 78.3978 13.9465 0.2441 0.2570 0.7104 0.0318 0.0929 0.0973 0.2543 2.6136 5.2136 -0.6121 -0.8741 3.6908 -0.3406 -0.4726 -0.8943 0.2651 -0.0493 1.1173 0.3710 -0.4762 0.3098 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 0:5)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 6:10)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 11:15)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 16:20)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 21:26)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain B and resid 0:5)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain B and resid 6:10)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain B and resid 11:15)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain B and resid 16:20)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain B and resid 21:26)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(chain C and resid 0:7)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(chain C and resid 8:12)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(chain C and resid 13:20)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(chain C and resid 21:26)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(chain D and resid 0:5)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(chain D and resid 6:9)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(chain D and resid 10:14)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(chain D and resid 15:20)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(chain D and resid 21:26)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R35GM122603 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #