HEADER TRANSCRIPTION 16-JAN-18 6C5Q TITLE PPARG LBD BOUND TO SR10171 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA, PPARG, NUCLEAR KEYWDS 2 RECEPTOR, INVERSE AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BRUNING,R.L.FRKIC REVDAT 4 15-NOV-23 6C5Q 1 REMARK REVDAT 3 04-OCT-23 6C5Q 1 REMARK REVDAT 2 05-SEP-18 6C5Q 1 JRNL REVDAT 1 01-AUG-18 6C5Q 0 JRNL AUTH R.L.FRKIC,A.C.MARSHALL,A.L.BLAYO,T.L.PUKALA,T.M.KAMENECKA, JRNL AUTH 2 P.R.GRIFFIN,J.B.BRUNING JRNL TITL PPAR GAMMA IN COMPLEX WITH AN ANTAGONIST AND INVERSE JRNL TITL 2 AGONIST: A TUMBLE AND TRAP MECHANISM OF THE ACTIVATION JRNL TITL 3 HELIX. JRNL REF ISCIENCE V. 5 69 2018 JRNL REFN ESSN 2589-0042 JRNL PMID 30123887 JRNL DOI 10.1016/J.ISCI.2018.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11_2567 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3078 - 4.5979 0.99 2866 137 0.2033 0.2213 REMARK 3 2 4.5979 - 3.6498 0.99 2639 129 0.2075 0.2432 REMARK 3 3 3.6498 - 3.1885 0.99 2600 143 0.2630 0.2986 REMARK 3 4 3.1885 - 2.8970 0.99 2540 138 0.3079 0.3270 REMARK 3 5 2.8970 - 2.6894 0.99 2521 128 0.3296 0.3983 REMARK 3 6 2.6894 - 2.5308 0.99 2519 129 0.3586 0.3635 REMARK 3 7 2.5308 - 2.4041 0.98 2481 125 0.3757 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2308 REMARK 3 ANGLE : 0.559 3137 REMARK 3 CHIRALITY : 0.035 351 REMARK 3 PLANARITY : 0.003 395 REMARK 3 DIHEDRAL : 11.967 1372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1077 -26.5220 6.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.4145 REMARK 3 T33: 0.5436 T12: 0.1781 REMARK 3 T13: -0.0510 T23: -0.2054 REMARK 3 L TENSOR REMARK 3 L11: 6.2425 L22: 1.1471 REMARK 3 L33: 4.2000 L12: 2.9320 REMARK 3 L13: -3.1735 L23: -1.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.2760 S12: -0.2477 S13: -0.1047 REMARK 3 S21: 0.1525 S22: -0.0561 S23: -0.1727 REMARK 3 S31: 0.0040 S32: 0.2428 S33: -0.1278 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1814 -33.9519 26.9890 REMARK 3 T TENSOR REMARK 3 T11: 1.1184 T22: 1.3406 REMARK 3 T33: 0.7026 T12: -0.0280 REMARK 3 T13: -0.0814 T23: -0.3646 REMARK 3 L TENSOR REMARK 3 L11: 4.5320 L22: 6.7088 REMARK 3 L33: 5.4320 L12: 2.0792 REMARK 3 L13: -1.1940 L23: -4.8826 REMARK 3 S TENSOR REMARK 3 S11: 0.1724 S12: -2.0144 S13: 1.3714 REMARK 3 S21: 1.9688 S22: -0.2052 S23: -0.1927 REMARK 3 S31: -0.8891 S32: -1.6604 S33: -0.0420 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0831 -18.6026 17.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.6575 REMARK 3 T33: 0.4022 T12: 0.0379 REMARK 3 T13: -0.0835 T23: -0.2219 REMARK 3 L TENSOR REMARK 3 L11: 5.7199 L22: 4.9397 REMARK 3 L33: 2.1484 L12: 3.7477 REMARK 3 L13: -0.7879 L23: 0.8171 REMARK 3 S TENSOR REMARK 3 S11: 0.5384 S12: -0.4819 S13: 0.2306 REMARK 3 S21: 0.2489 S22: -0.2546 S23: 0.0032 REMARK 3 S31: -0.1251 S32: -0.1395 S33: -0.2214 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0283 -16.1986 5.4803 REMARK 3 T TENSOR REMARK 3 T11: 0.5435 T22: 0.6433 REMARK 3 T33: 0.5017 T12: 0.0959 REMARK 3 T13: -0.0020 T23: -0.2463 REMARK 3 L TENSOR REMARK 3 L11: 3.4535 L22: 2.4826 REMARK 3 L33: 1.5843 L12: 1.9963 REMARK 3 L13: -1.3965 L23: -1.4765 REMARK 3 S TENSOR REMARK 3 S11: 0.3879 S12: 0.5854 S13: 0.3776 REMARK 3 S21: -0.1724 S22: -0.1112 S23: 0.1207 REMARK 3 S31: -0.1575 S32: -0.3447 S33: -0.2022 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6132 -10.4278 8.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.8183 T22: 0.6826 REMARK 3 T33: 0.5302 T12: 0.0804 REMARK 3 T13: -0.0333 T23: -0.1995 REMARK 3 L TENSOR REMARK 3 L11: 9.7527 L22: 5.6369 REMARK 3 L33: 8.1406 L12: -1.0446 REMARK 3 L13: -8.2073 L23: 1.7111 REMARK 3 S TENSOR REMARK 3 S11: 0.8882 S12: -0.3115 S13: 0.5875 REMARK 3 S21: 0.5581 S22: -0.4728 S23: 0.8607 REMARK 3 S31: -1.2885 S32: -1.1076 S33: -0.3246 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8947 -20.5052 33.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.8154 T22: 1.1067 REMARK 3 T33: 0.5947 T12: -0.0420 REMARK 3 T13: -0.2661 T23: -0.1979 REMARK 3 L TENSOR REMARK 3 L11: 9.6974 L22: 5.6161 REMARK 3 L33: 7.3599 L12: -0.4594 REMARK 3 L13: 0.8103 L23: -3.8092 REMARK 3 S TENSOR REMARK 3 S11: 0.8232 S12: 2.1485 S13: -0.1053 REMARK 3 S21: 0.6029 S22: -0.7284 S23: 0.4542 REMARK 3 S31: 0.8178 S32: -0.6932 S33: 0.1254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : MIRRORS - SI ANS RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19263 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 73.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.32200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 4.03800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 4R06 REMARK 200 REMARK 200 REMARK: IRREGULAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M AMMONIUM ACETATE, O.1M BIS-TRIS REMARK 280 PROPANE 7.0, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 245.63333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.81667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.22500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.40833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 307.04167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 245.63333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 122.81667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.40833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 184.22500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 307.04167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 206 CG SD CE REMARK 470 THR A 241 OG1 CG2 REMARK 470 THR A 242 OG1 CG2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 263 CD CE NZ REMARK 470 LYS A 265 CD CE NZ REMARK 470 ILE A 267 CG1 CG2 CD1 REMARK 470 THR A 268 OG1 CG2 REMARK 470 PRO A 269 CG CD REMARK 470 LEU A 270 CG CD1 CD2 REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 SER A 274 OG REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 THR A 461 OG1 CG2 REMARK 470 ASP A 462 CG OD1 OD2 REMARK 470 GLN A 470 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 205 39.84 -151.93 REMARK 500 MET A 206 -30.37 64.39 REMARK 500 LYS A 265 -67.14 -107.44 REMARK 500 HIS A 266 81.75 54.72 REMARK 500 ASN A 335 -149.60 -125.57 REMARK 500 SER A 342 70.31 59.19 REMARK 500 LEU A 401 -64.08 -93.75 REMARK 500 THR A 461 -3.71 65.07 REMARK 500 ASP A 462 63.00 -169.40 REMARK 500 SER A 464 100.59 -59.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKS A 502 DBREF 6C5Q A 207 477 UNP P37231 PPARG_HUMAN 235 505 SEQADV 6C5Q HIS A 197 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 198 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 199 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 200 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 201 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 202 UNP P37231 EXPRESSION TAG SEQADV 6C5Q GLY A 203 UNP P37231 EXPRESSION TAG SEQADV 6C5Q SER A 204 UNP P37231 EXPRESSION TAG SEQADV 6C5Q HIS A 205 UNP P37231 EXPRESSION TAG SEQADV 6C5Q MET A 206 UNP P37231 EXPRESSION TAG SEQRES 1 A 281 HIS HIS HIS HIS HIS HIS GLY SER HIS MET GLU SER ALA SEQRES 2 A 281 ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR SEQRES 3 A 281 ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA SEQRES 4 A 281 ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE VAL SEQRES 5 A 281 ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP LYS SEQRES 6 A 281 ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER SEQRES 7 A 281 LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CSO GLN PHE SEQRES 8 A 281 ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA SEQRES 9 A 281 LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP SEQRES 10 A 281 GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE SEQRES 11 A 281 TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL SEQRES 12 A 281 LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE SEQRES 13 A 281 LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU SEQRES 14 A 281 PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU SEQRES 15 A 281 LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE SEQRES 16 A 281 ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS SEQRES 17 A 281 PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU SEQRES 18 A 281 GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN SEQRES 19 A 281 LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG SEQRES 20 A 281 GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE SEQRES 21 A 281 LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU LEU SEQRES 22 A 281 GLN GLU ILE TYR LYS ASP LEU TYR MODRES 6C5Q CSO A 285 CYS MODIFIED RESIDUE HET CSO A 285 7 HET EKS A 501 40 HET EKS A 502 40 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EKS 2-{3-[(5-{[(1S)-1-(4-TERT-BUTYLPHENYL)ETHYL]CARBAMOYL}- HETNAM 2 EKS 2,3-DIMETHYL-1H-INDOL-1-YL)METHYL]PHENOXY}-2- HETNAM 3 EKS METHYLPROPANOIC ACID FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 EKS 2(C34 H40 N2 O4) FORMUL 4 HOH *34(H2 O) HELIX 1 AA1 MET A 206 PHE A 226 1 21 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 ASP A 260 1 10 HELIX 4 AA4 GLU A 272 ILE A 303 1 32 HELIX 5 AA5 ASP A 310 SER A 332 1 23 HELIX 6 AA6 ARG A 350 SER A 355 1 6 HELIX 7 AA7 PRO A 359 PHE A 363 5 5 HELIX 8 AA8 MET A 364 ALA A 376 1 13 HELIX 9 AA9 ASP A 380 LEU A 393 1 14 HELIX 10 AB1 ASN A 402 HIS A 425 1 24 HELIX 11 AB2 GLN A 430 GLU A 460 1 31 HELIX 12 AB3 HIS A 466 TYR A 477 1 12 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 LINK C GLY A 284 N CSO A 285 1555 1555 1.33 LINK C CSO A 285 N GLN A 286 1555 1555 1.33 SITE 1 AC1 13 GLY A 284 CSO A 285 PHE A 287 ARG A 288 SITE 2 AC1 13 SER A 289 ILE A 326 MET A 329 LEU A 330 SITE 3 AC1 13 LEU A 333 ILE A 341 SER A 342 TYR A 473 SITE 4 AC1 13 EKS A 502 SITE 1 AC2 13 GLY A 258 GLU A 259 ILE A 262 PHE A 264 SITE 2 AC2 13 LYS A 265 HIS A 266 ILE A 279 ARG A 280 SITE 3 AC2 13 GLN A 283 MET A 348 LEU A 465 TYR A 473 SITE 4 AC2 13 EKS A 501 CRYST1 65.190 65.190 368.450 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015340 0.008856 0.000000 0.00000 SCALE2 0.000000 0.017713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002714 0.00000