HEADER TRANSCRIPTION 16-JAN-18 6C5T TITLE PPARG LBD BOUND TO SR11023 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11 KEYWDS PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; PPARG, NUCLEAR KEYWDS 2 RECEPTOR, INVERSE AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BRUNING,R.L.FRKIC,P.R.GRIFFIN REVDAT 4 15-NOV-23 6C5T 1 REMARK REVDAT 3 04-OCT-23 6C5T 1 REMARK REVDAT 2 05-SEP-18 6C5T 1 JRNL REVDAT 1 01-AUG-18 6C5T 0 JRNL AUTH R.L.FRKIC,A.C.MARSHALL,A.L.BLAYO,T.L.PUKALA,T.M.KAMENECKA, JRNL AUTH 2 P.R.GRIFFIN,J.B.BRUNING JRNL TITL PPAR GAMMA IN COMPLEX WITH AN ANTAGONIST AND INVERSE JRNL TITL 2 AGONIST: A TUMBLE AND TRAP MECHANISM OF THE ACTIVATION JRNL TITL 3 HELIX. JRNL REF ISCIENCE V. 5 69 2018 JRNL REFN ESSN 2589-0042 JRNL PMID 30123887 JRNL DOI 10.1016/J.ISCI.2018.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11_2567 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 12139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7101 - 4.3538 0.98 3092 167 0.2035 0.2313 REMARK 3 2 4.3538 - 3.4618 0.99 2884 147 0.2539 0.3214 REMARK 3 3 3.4618 - 3.0260 0.99 2810 157 0.3375 0.3428 REMARK 3 4 3.0260 - 2.7501 0.97 2749 133 0.4009 0.4160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 2116 REMARK 3 ANGLE : 0.457 2875 REMARK 3 CHIRALITY : 0.036 337 REMARK 3 PLANARITY : 0.002 366 REMARK 3 DIHEDRAL : 8.581 1262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5856 -22.1915 5.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.7156 T22: 0.7219 REMARK 3 T33: 0.5532 T12: 0.0682 REMARK 3 T13: -0.0265 T23: -0.0975 REMARK 3 L TENSOR REMARK 3 L11: 5.1233 L22: 3.2984 REMARK 3 L33: 2.0036 L12: 2.0509 REMARK 3 L13: -2.9113 L23: -1.5697 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: 0.6879 S13: -0.5408 REMARK 3 S21: -0.3771 S22: 0.2175 S23: -0.1159 REMARK 3 S31: -0.3161 S32: -0.1769 S33: -0.3977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3452 -35.6444 20.0423 REMARK 3 T TENSOR REMARK 3 T11: 1.2508 T22: 0.7310 REMARK 3 T33: 0.7660 T12: -0.2404 REMARK 3 T13: -0.1364 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 8.8695 L22: 8.9356 REMARK 3 L33: 7.3278 L12: 1.7555 REMARK 3 L13: 2.6603 L23: -0.7338 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: -1.9763 S13: 0.3239 REMARK 3 S21: 2.6279 S22: 0.1036 S23: -0.2548 REMARK 3 S31: 1.6828 S32: -0.6623 S33: -0.5517 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5775 -20.0245 21.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.9810 T22: 0.5050 REMARK 3 T33: 0.6113 T12: -0.0947 REMARK 3 T13: -0.1316 T23: -0.2877 REMARK 3 L TENSOR REMARK 3 L11: 2.0022 L22: 3.8054 REMARK 3 L33: 2.2423 L12: 4.7691 REMARK 3 L13: -4.5315 L23: -1.7726 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: -1.1747 S13: -0.3107 REMARK 3 S21: -0.1322 S22: -0.5409 S23: -0.0152 REMARK 3 S31: 0.2419 S32: 0.2414 S33: -0.1352 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8414 -18.6144 12.2862 REMARK 3 T TENSOR REMARK 3 T11: 0.7542 T22: 0.6083 REMARK 3 T33: 0.4282 T12: 0.0545 REMARK 3 T13: 0.0030 T23: -0.1943 REMARK 3 L TENSOR REMARK 3 L11: 3.7418 L22: 4.6906 REMARK 3 L33: 2.9973 L12: 3.6830 REMARK 3 L13: 0.8117 L23: 1.5482 REMARK 3 S TENSOR REMARK 3 S11: 0.8278 S12: -0.2464 S13: 0.4182 REMARK 3 S21: 0.2221 S22: -0.4147 S23: 0.0906 REMARK 3 S31: -0.4096 S32: -0.8703 S33: 0.0858 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8014 -10.6738 4.2593 REMARK 3 T TENSOR REMARK 3 T11: 0.7111 T22: 0.5722 REMARK 3 T33: 0.3809 T12: 0.2295 REMARK 3 T13: -0.0111 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 4.2082 L22: 7.7800 REMARK 3 L33: 4.8499 L12: 2.6846 REMARK 3 L13: -0.5711 L23: 1.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.3359 S12: 0.2750 S13: 0.7512 REMARK 3 S21: -0.0981 S22: -0.0445 S23: 0.1203 REMARK 3 S31: -0.9194 S32: -0.2081 S33: -0.4144 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2833 -18.9665 32.4504 REMARK 3 T TENSOR REMARK 3 T11: 1.2752 T22: 1.2785 REMARK 3 T33: 0.8864 T12: -0.4567 REMARK 3 T13: -0.1173 T23: -0.1995 REMARK 3 L TENSOR REMARK 3 L11: 9.0327 L22: 3.0934 REMARK 3 L33: 8.4277 L12: -4.2135 REMARK 3 L13: 4.1977 L23: -4.6627 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.5100 S13: 1.2626 REMARK 3 S21: 1.4650 S22: -0.4661 S23: -0.5211 REMARK 3 S31: -0.4289 S32: -0.3681 S33: 0.8427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.24100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 2.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R06 REMARK 200 REMARK 200 REMARK: IRREGULAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 + 0.2M AMMONIUM CITRATE REMARK 280 7.0, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 243.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.78333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 182.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.89167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 304.45833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 243.56667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 121.78333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.89167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 182.67500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 304.45833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 MET A 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 202 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 206 CG SD CE REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 THR A 241 OG1 CG2 REMARK 470 THR A 242 OG1 CG2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 SER A 245 OG REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 HIS A 266 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 267 CG1 CG2 CD1 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 GLU A 427 CG CD OE1 OE2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 GLN A 451 CG CD OE1 NE2 REMARK 470 LEU A 453 CG CD1 CD2 REMARK 470 ILE A 456 CG1 CG2 CD1 REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 THR A 459 OG1 CG2 REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 THR A 461 OG1 CG2 REMARK 470 ASP A 462 CG OD1 OD2 REMARK 470 SER A 464 OG REMARK 470 GLN A 470 CG CD OE1 NE2 REMARK 470 TYR A 477 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 299 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 205 -169.20 -179.73 REMARK 500 LYS A 265 69.03 -161.69 REMARK 500 ASN A 335 -142.82 -120.95 REMARK 500 LEU A 393 37.85 -82.75 REMARK 500 SER A 428 87.74 58.79 REMARK 500 GLU A 460 -72.71 -159.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKP A 501 DBREF 6C5T A 207 477 UNP P37231 PPARG_HUMAN 235 505 SEQADV 6C5T HIS A 202 UNP P37231 EXPRESSION TAG SEQADV 6C5T GLY A 203 UNP P37231 EXPRESSION TAG SEQADV 6C5T SER A 204 UNP P37231 EXPRESSION TAG SEQADV 6C5T HIS A 205 UNP P37231 EXPRESSION TAG SEQADV 6C5T MET A 206 UNP P37231 EXPRESSION TAG SEQRES 1 A 276 HIS GLY SER HIS MET GLU SER ALA ASP LEU ARG ALA LEU SEQRES 2 A 276 ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO SEQRES 3 A 276 LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS SEQRES 4 A 276 THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SEQRES 5 A 276 SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS SEQRES 6 A 276 ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE SEQRES 7 A 276 ARG ILE PHE GLN GLY CSO GLN PHE ARG SER VAL GLU ALA SEQRES 8 A 276 VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY SEQRES 9 A 276 PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU SEQRES 10 A 276 LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SEQRES 11 A 276 SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY SEQRES 12 A 276 GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG SEQRES 13 A 276 LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE SEQRES 14 A 276 ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP SEQRES 15 A 276 LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP SEQRES 16 A 276 ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE SEQRES 17 A 276 GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS SEQRES 18 A 276 LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU SEQRES 19 A 276 LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU SEQRES 20 A 276 HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR SEQRES 21 A 276 ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS SEQRES 22 A 276 ASP LEU TYR MODRES 6C5T CSO A 285 CYS MODIFIED RESIDUE HET CSO A 285 7 HET EKP A 501 38 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EKP 2-{4-[(5-{[(1R)-1-(3-CYCLOPROPYLPHENYL) HETNAM 2 EKP ETHYL]CARBAMOYL}-2,3-DIMETHYL-1H-INDOL-1-YL) HETNAM 3 EKP METHYL]PHENYL}-2-METHYLPROPANOIC ACID FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 EKP C33 H36 N2 O3 FORMUL 3 HOH *73(H2 O) HELIX 1 AA1 HIS A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 ILE A 262 1 12 HELIX 4 AA4 SER A 274 ILE A 303 1 30 HELIX 5 AA5 ASP A 310 SER A 332 1 23 HELIX 6 AA6 ARG A 350 SER A 355 1 6 HELIX 7 AA7 MET A 364 ALA A 376 1 13 HELIX 8 AA8 ASP A 380 LEU A 393 1 14 HELIX 9 AA9 VAL A 403 HIS A 425 1 23 HELIX 10 AB1 GLN A 430 LYS A 457 1 28 HELIX 11 AB2 HIS A 466 TYR A 477 1 12 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O THR A 349 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 LINK C GLY A 284 N CSO A 285 1555 1555 1.33 LINK C CSO A 285 N GLN A 286 1555 1555 1.33 SITE 1 AC1 15 ILE A 281 GLY A 284 CSO A 285 PHE A 287 SITE 2 AC1 15 ARG A 288 ALA A 292 ILE A 326 MET A 329 SITE 3 AC1 15 LEU A 330 LEU A 333 LEU A 340 ILE A 341 SITE 4 AC1 15 SER A 342 HOH A 606 HOH A 621 CRYST1 63.640 63.640 365.350 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015713 0.009072 0.000000 0.00000 SCALE2 0.000000 0.018144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002737 0.00000