HEADER RNA 17-JAN-18 6C63 TITLE CRYSTAL STRUCTURE OF THE MANGO-II FLUORESCENT APTAMER BOUND TO TO1- TITLE 2 BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (36-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (32-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: RNA WAS PREPARED BY IN VITRO TRANSCRIPTION KEYWDS FLUORESCENT, RNA, APTAMER, G-QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 2 04-OCT-23 6C63 1 LINK REVDAT 1 08-AUG-18 6C63 0 JRNL AUTH R.J.TRACHMAN 3RD.,A.ABDOLAHZADEH,A.ANDREONI,R.COJOCARU, JRNL AUTH 2 J.R.KNUTSON,M.RYCKELYNCK,P.J.UNRAU,A.R.FERRE-D'AMARE JRNL TITL CRYSTAL STRUCTURES OF THE MANGO-II RNA APTAMER REVEAL JRNL TITL 2 HETEROGENEOUS FLUOROPHORE BINDING AND GUIDE ENGINEERING OF JRNL TITL 3 VARIANTS WITH IMPROVED SELECTIVITY AND BRIGHTNESS. JRNL REF BIOCHEMISTRY V. 57 3544 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29768001 JRNL DOI 10.1021/ACS.BIOCHEM.8B00399 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.894 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 91.2511 - 6.4489 1.00 1283 137 0.1913 0.2184 REMARK 3 2 6.4489 - 5.1188 1.00 1258 140 0.1555 0.1758 REMARK 3 3 5.1188 - 4.4718 1.00 1272 136 0.1825 0.2331 REMARK 3 4 4.4718 - 4.0629 1.00 1254 135 0.1900 0.2550 REMARK 3 5 4.0629 - 3.7717 1.00 1295 139 0.1843 0.2000 REMARK 3 6 3.7717 - 3.5493 0.99 1257 138 0.1960 0.2468 REMARK 3 7 3.5493 - 3.3716 0.99 1246 139 0.1840 0.2671 REMARK 3 8 3.3716 - 3.2248 0.99 1267 145 0.1828 0.2336 REMARK 3 9 3.2248 - 3.1006 1.00 1252 139 0.1956 0.2946 REMARK 3 10 3.1006 - 2.9936 1.00 1293 145 0.2272 0.3490 REMARK 3 11 2.9936 - 2.9000 1.00 1257 137 0.2281 0.2528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2666 REMARK 3 ANGLE : 1.370 4152 REMARK 3 CHIRALITY : 0.054 518 REMARK 3 PLANARITY : 0.007 111 REMARK 3 DIHEDRAL : 22.578 1256 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.495 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 91.206 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5V3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 2.45 M AMMONIUM REMARK 280 FORMATE, 14.5% GLYCEROL, 6.5% D-SORBITOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.74700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.74700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.41550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.20600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.41550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.20600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.74700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.41550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.20600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.74700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.41550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.20600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 104 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A C 22 C8 N7 C5 C6 N6 N1 C2 REMARK 470 A C 22 N3 C4 REMARK 470 A C 28 C8 N7 C5 C6 N6 N1 C2 REMARK 470 A C 28 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' G B 26 OP2 G C 20 2.15 REMARK 500 OP2 G B 20 O2' G C 26 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' A C 23 O2' A C 23 4555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 15 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 11 O6 88.7 REMARK 620 3 G A 15 O6 67.2 87.9 REMARK 620 4 G A 16 O6 145.8 65.5 88.8 REMARK 620 5 G A 20 O6 107.3 154.5 80.6 91.4 REMARK 620 6 G A 21 O6 147.6 97.7 144.4 62.5 79.5 REMARK 620 7 G A 26 O6 69.2 137.5 113.6 145.0 67.8 85.4 REMARK 620 8 G A 27 O6 93.1 67.2 149.0 96.6 129.5 61.1 78.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 10 O6 0.0 REMARK 620 3 G A 15 O6 66.3 66.3 REMARK 620 4 G A 15 O6 66.3 66.3 0.0 REMARK 620 5 G A 20 O6 107.3 107.3 74.6 74.6 REMARK 620 6 G A 20 O6 107.3 107.3 74.6 74.6 0.0 REMARK 620 7 G A 26 O6 70.0 70.0 105.1 105.1 64.6 64.6 REMARK 620 8 G A 26 O6 70.0 70.0 105.1 105.1 64.6 64.6 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 13 O6 87.8 REMARK 620 3 G A 16 O6 61.6 81.7 REMARK 620 4 G A 18 O6 152.7 72.6 96.1 REMARK 620 5 G A 21 O6 99.2 134.6 63.6 82.5 REMARK 620 6 G A 24 O6 135.7 115.5 152.6 71.2 90.2 REMARK 620 7 G A 27 O6 68.5 151.9 99.0 134.7 67.0 76.0 REMARK 620 8 G A 29 O6 81.7 69.1 133.7 107.6 156.2 73.6 91.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 11 O6 89.2 REMARK 620 3 G B 15 O6 70.6 89.5 REMARK 620 4 G B 16 O6 144.3 69.2 80.8 REMARK 620 5 G B 20 O6 95.3 148.1 62.7 90.0 REMARK 620 6 G B 21 O6 145.9 110.1 134.6 69.8 83.0 REMARK 620 7 G B 26 O6 64.7 142.6 105.0 146.2 65.2 84.2 REMARK 620 8 G B 27 O6 91.1 77.4 157.8 110.3 133.8 67.4 76.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 15 O6 74.0 REMARK 620 3 G B 20 O6 112.1 65.9 REMARK 620 4 G B 26 O6 67.7 100.2 68.5 REMARK 620 5 G C 10 O6 121.3 72.6 95.9 164.5 REMARK 620 6 G C 15 O6 72.8 97.4 158.9 129.8 65.6 REMARK 620 7 G C 20 O6 85.3 156.8 133.7 80.9 111.3 65.9 REMARK 620 8 G C 26 O6 159.5 126.6 80.5 104.6 71.0 101.5 74.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 11 O6 REMARK 620 2 G B 13 O6 95.7 REMARK 620 3 G B 16 O6 66.5 85.9 REMARK 620 4 G B 18 O6 142.7 56.8 85.2 REMARK 620 5 G B 21 O6 108.1 131.8 67.5 80.7 REMARK 620 6 G B 24 O6 147.7 92.5 145.5 65.7 88.9 REMARK 620 7 G B 27 O6 78.3 159.5 108.9 136.2 68.3 83.1 REMARK 620 8 G B 29 O6 92.0 63.4 141.1 95.9 151.2 64.2 97.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 10 O6 REMARK 620 2 G C 11 O6 89.1 REMARK 620 3 G C 15 O6 65.4 97.5 REMARK 620 4 G C 16 O6 133.6 65.0 80.0 REMARK 620 5 G C 20 O6 100.0 151.6 63.2 90.1 REMARK 620 6 G C 21 O6 153.8 97.7 137.6 71.3 86.0 REMARK 620 7 G C 26 O6 68.9 138.4 103.9 153.4 69.4 90.0 REMARK 620 8 G C 27 O6 98.2 65.2 157.3 103.8 138.2 62.8 82.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 13 O6 99.5 REMARK 620 3 G C 16 O6 64.3 88.1 REMARK 620 4 G C 18 O6 156.0 69.1 93.6 REMARK 620 5 G C 21 O6 99.9 137.2 67.1 78.0 REMARK 620 6 G C 24 O6 133.1 108.5 150.1 70.8 84.5 REMARK 620 7 G C 27 O6 68.4 160.4 99.5 127.8 61.9 73.3 REMARK 620 8 G C 29 O6 89.1 68.9 141.8 105.2 148.8 68.0 94.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 104 DBREF 6C63 A 1 36 PDB 6C63 6C63 1 36 DBREF 6C63 B 1 36 PDB 6C63 6C63 1 36 DBREF 6C63 C 3 34 PDB 6C63 6C63 3 34 SEQRES 1 A 36 G C G U A C G A A G G A G SEQRES 2 A 36 A G G A G A G G A A G A G SEQRES 3 A 36 G A G A G U A C G C SEQRES 1 B 36 G C G U A C G A A G G A G SEQRES 2 B 36 A G G A G A G G A A G A G SEQRES 3 B 36 G A G A G U A C G C SEQRES 1 C 32 G U A C G A A G G A G A G SEQRES 2 C 32 G A G A G G A A G A G G A SEQRES 3 C 32 G A G U A C HET EKJ A 101 53 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET EKJ B 101 53 HET K B 102 1 HET K B 103 1 HET EKJ C 101 53 HET K C 102 1 HET K C 103 1 HET K C 104 1 HETNAM EKJ 4-[(3-{2-[(2-METHOXYETHYL)AMINO]-2-OXOETHYL}-1,3- HETNAM 2 EKJ BENZOTHIAZOL-3-IUM-2-YL)METHYL]-1-METHYLQUINOLIN-1-IUM HETNAM K POTASSIUM ION FORMUL 4 EKJ 3(C23 H25 N3 O2 S 2+) FORMUL 5 K 8(K 1+) LINK O6 G A 10 K K A 103 1555 1555 2.81 LINK O6 G A 10 K K A 104 1555 1555 2.65 LINK O6 G A 10 K K A 104 1555 3654 2.65 LINK O6 G A 11 K K A 102 1555 1555 2.84 LINK O6 G A 11 K K A 103 1555 1555 2.69 LINK O6 G A 13 K K A 102 1555 1555 2.58 LINK O6 G A 15 K K A 103 1555 1555 2.73 LINK O6 G A 15 K K A 104 1555 1555 2.94 LINK O6 G A 15 K K A 104 1555 3654 2.94 LINK O6 G A 16 K K A 102 1555 1555 2.75 LINK O6 G A 16 K K A 103 1555 1555 2.60 LINK O6 G A 18 K K A 102 1555 1555 2.69 LINK O6 G A 20 K K A 103 1555 1555 2.70 LINK O6 G A 20 K K A 104 1555 1555 2.86 LINK O6 G A 20 K K A 104 1555 3654 2.86 LINK O6 G A 21 K K A 102 1555 1555 2.66 LINK O6 G A 21 K K A 103 1555 1555 2.88 LINK O6 G A 24 K K A 102 1555 1555 2.72 LINK O6 G A 26 K K A 103 1555 1555 2.77 LINK O6 G A 26 K K A 104 1555 1555 2.86 LINK O6 G A 26 K K A 104 1555 3654 2.86 LINK O6 G A 27 K K A 102 1555 1555 2.71 LINK O6 G A 27 K K A 103 1555 1555 2.95 LINK O6 G A 29 K K A 102 1555 1555 2.76 LINK O6 G B 10 K K B 102 1555 1555 2.90 LINK O6 G B 10 K K C 103 1555 1555 2.59 LINK O6 G B 11 K K B 102 1555 1555 2.56 LINK O6 G B 11 K K B 103 1555 1555 2.60 LINK O6 G B 13 K K B 103 1555 1555 2.64 LINK O6 G B 15 K K B 102 1555 1555 2.64 LINK O6 G B 15 K K C 103 1555 1555 2.74 LINK O6 G B 16 K K B 102 1555 1555 2.60 LINK O6 G B 16 K K B 103 1555 1555 2.74 LINK O6 G B 18 K K B 103 1555 1555 2.81 LINK O6 G B 20 K K B 102 1555 1555 2.99 LINK O6 G B 20 K K C 103 1555 1555 2.66 LINK O6 G B 21 K K B 102 1555 1555 2.79 LINK O6 G B 21 K K B 103 1555 1555 2.81 LINK O6 G B 24 K K B 103 1555 1555 2.77 LINK O6 G B 26 K K B 102 1555 1555 2.80 LINK O6 G B 26 K K C 103 1555 1555 2.87 LINK O6 G B 27 K K B 102 1555 1555 2.79 LINK O6 G B 27 K K B 103 1555 1555 2.70 LINK O6 G B 29 K K B 103 1555 1555 3.03 LINK O6 G C 10 K K C 102 1555 1555 2.85 LINK O6 G C 10 K K C 103 1555 1555 2.73 LINK O6 G C 11 K K C 102 1555 1555 2.75 LINK O6 G C 11 K K C 104 1555 1555 2.56 LINK O6 G C 13 K K C 104 1555 1555 2.67 LINK O6 G C 15 K K C 102 1555 1555 2.63 LINK O6 G C 15 K K C 103 1555 1555 2.74 LINK O6 G C 16 K K C 102 1555 1555 2.80 LINK O6 G C 16 K K C 104 1555 1555 3.01 LINK O6 G C 18 K K C 104 1555 1555 2.76 LINK O6 G C 20 K K C 102 1555 1555 2.91 LINK O6 G C 20 K K C 103 1555 1555 2.60 LINK O6 G C 21 K K C 102 1555 1555 2.76 LINK O6 G C 21 K K C 104 1555 1555 2.86 LINK O6 G C 24 K K C 104 1555 1555 2.74 LINK O6 G C 26 K K C 102 1555 1555 2.67 LINK O6 G C 26 K K C 103 1555 1555 2.64 LINK O6 G C 27 K K C 102 1555 1555 2.75 LINK O6 G C 27 K K C 104 1555 1555 2.71 LINK O6 G C 29 K K C 104 1555 1555 2.79 SITE 1 AC1 7 G A 13 A A 17 G A 18 A A 22 SITE 2 AC1 7 G A 24 A A 28 G A 29 SITE 1 AC2 9 G A 11 G A 13 G A 16 G A 18 SITE 2 AC2 9 G A 21 G A 24 G A 27 G A 29 SITE 3 AC2 9 K A 103 SITE 1 AC3 10 G A 10 G A 11 G A 15 G A 16 SITE 2 AC3 10 G A 20 G A 21 G A 26 G A 27 SITE 3 AC3 10 K A 102 K A 104 SITE 1 AC4 5 G A 10 G A 15 G A 20 G A 26 SITE 2 AC4 5 K A 103 SITE 1 AC5 7 G B 13 A B 17 A B 22 A B 23 SITE 2 AC5 7 G B 24 A B 28 G B 29 SITE 1 AC6 10 G B 10 G B 11 G B 15 G B 16 SITE 2 AC6 10 G B 20 G B 21 G B 26 G B 27 SITE 3 AC6 10 K B 103 K C 103 SITE 1 AC7 9 G B 11 G B 13 G B 16 G B 18 SITE 2 AC7 9 G B 21 G B 24 G B 27 G B 29 SITE 3 AC7 9 K B 102 SITE 1 AC8 6 A C 12 G C 13 G C 18 A C 22 SITE 2 AC8 6 G C 24 G C 29 SITE 1 AC9 10 G C 10 G C 11 G C 15 G C 16 SITE 2 AC9 10 G C 20 G C 21 G C 26 G C 27 SITE 3 AC9 10 K C 103 K C 104 SITE 1 AD1 10 G B 10 G B 15 G B 20 G B 26 SITE 2 AD1 10 K B 102 G C 10 G C 15 G C 20 SITE 3 AD1 10 G C 26 K C 102 SITE 1 AD2 9 G C 11 G C 13 G C 16 G C 18 SITE 2 AD2 9 G C 21 G C 24 G C 27 G C 29 SITE 3 AD2 9 K C 102 CRYST1 36.831 182.412 107.494 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009303 0.00000