HEADER OXIDOREDUCTASE 20-JAN-18 6C76 TITLE STRUCTURE OF IRON CONTAINING ALCOHOL DEHYDROGENASE FROM THERMOCOCCUS TITLE 2 THIOREDUCENS IN AN ORTHORHOMBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 GENE: AMR53_06445, SAMN05216170_0411; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALCOHOL DEHYDROGENASE, IRON-CONTAINING, OXIDOREDUCTASE, OGL-20P EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LARSON,A.MCPHERSON REVDAT 3 04-OCT-23 6C76 1 REMARK REVDAT 2 17-APR-19 6C76 1 JRNL REVDAT 1 23-JAN-19 6C76 0 JRNL AUTH S.B.LARSON,J.A.JONES,A.MCPHERSON JRNL TITL THE STRUCTURE OF AN IRON-CONTAINING ALCOHOL DEHYDROGENASE JRNL TITL 2 FROM A HYPERTHERMOPHILIC ARCHAEON IN TWO CHEMICAL STATES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 75 217 2019 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30950821 JRNL DOI 10.1107/S2053230X19001201 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 39750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 32.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6196 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6253 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8383 ; 0.964 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14314 ; 0.618 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 771 ; 7.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;35.979 ;23.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1123 ;18.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;23.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 927 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6798 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1319 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3388 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 12086 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6156 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 6648 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 232 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 8 ; 0.054 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.294 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.088 ; 0.200 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3041 ; 3.460 ; 3.520 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3039 ; 3.453 ; 3.518 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3800 ; 4.995 ; 5.273 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3801 ; 4.997 ; 5.275 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3155 ; 4.862 ; 4.362 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3156 ; 4.862 ; 4.362 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4574 ; 7.737 ; 6.239 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4575 ; 7.737 ; 6.241 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7281 ;10.500 ;29.878 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7211 ;10.478 ;29.723 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3234 75.9309 46.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0321 REMARK 3 T33: 0.0538 T12: -0.0105 REMARK 3 T13: -0.0018 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.5645 L22: 0.2609 REMARK 3 L33: 0.4557 L12: -0.1317 REMARK 3 L13: -0.1473 L23: -0.2402 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.0083 S13: 0.0373 REMARK 3 S21: 0.0157 S22: 0.0054 S23: 0.0022 REMARK 3 S31: -0.0470 S32: 0.0503 S33: -0.0455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2205 53.0543 51.3569 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0298 REMARK 3 T33: 0.0206 T12: -0.0022 REMARK 3 T13: -0.0183 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.2550 L22: 0.1897 REMARK 3 L33: 0.6866 L12: -0.1126 REMARK 3 L13: -0.2017 L23: -0.1544 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.0173 S13: 0.0003 REMARK 3 S21: -0.0088 S22: 0.0617 S23: -0.0073 REMARK 3 S31: 0.1573 S32: -0.0626 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6693 72.7141 14.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0569 REMARK 3 T33: 0.0407 T12: 0.0490 REMARK 3 T13: -0.0504 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.0084 L22: 0.4524 REMARK 3 L33: 0.7048 L12: -0.3080 REMARK 3 L13: 0.1551 L23: 0.4337 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0894 S13: 0.0864 REMARK 3 S21: -0.1404 S22: -0.1036 S23: 0.0170 REMARK 3 S31: -0.2137 S32: -0.0755 S33: 0.0991 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6487 50.3375 13.3161 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0064 REMARK 3 T33: 0.0171 T12: -0.0072 REMARK 3 T13: -0.0222 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.2044 REMARK 3 L33: 0.7056 L12: 0.0022 REMARK 3 L13: -0.0497 L23: -0.0260 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.0209 S13: 0.0454 REMARK 3 S21: -0.0858 S22: -0.0046 S23: 0.0436 REMARK 3 S31: 0.0732 S32: 0.0406 S33: 0.0343 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4952 65.5149 53.0790 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.0364 REMARK 3 T33: 0.0470 T12: 0.0072 REMARK 3 T13: -0.0004 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 5.9874 L22: 0.2187 REMARK 3 L33: 2.0577 L12: 0.5202 REMARK 3 L13: 2.0094 L23: -0.3130 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.3162 S13: 0.1352 REMARK 3 S21: -0.0273 S22: -0.0723 S23: 0.0375 REMARK 3 S31: 0.1187 S32: 0.0024 S33: -0.0415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE GENERATED BY REFMAC AND REMARK 3 ALLOWED TO RIDE ON THE ATOMS TO WHICH THEY WERE ATTACHED UNLESS REMARK 3 MOVED TO RELIEVE VAN DER WAALS CONTACTS. REMARK 4 REMARK 4 6C76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : 0.20900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 35.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.5 REMARK 200 STARTING MODEL: 6C75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 10% PEG 10,000 REMARK 280 AT PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.04050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.98900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.04050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.98900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 200 HD1 HIS B 260 1.54 REMARK 500 H ASP A 292 O HOH A 517 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 336 HE2 HIS B 39 2565 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 131 -27.69 -143.93 REMARK 500 ARG A 255 -162.45 65.76 REMARK 500 PHE A 307 -158.95 -105.83 REMARK 500 LYS B 23 121.59 -29.41 REMARK 500 GLU B 51 5.09 -69.96 REMARK 500 LEU B 62 121.60 -13.68 REMARK 500 ALA B 64 -176.81 -66.91 REMARK 500 GLU B 65 79.67 45.26 REMARK 500 GLU B 65 79.74 45.56 REMARK 500 LEU B 130 -167.37 -101.20 REMARK 500 LYS B 131 -35.24 -149.30 REMARK 500 ARG B 255 -166.04 73.76 REMARK 500 PHE B 307 -159.55 -113.89 REMARK 500 ARG B 376 -5.64 -56.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 161 ILE A 162 149.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 115 -10.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 666 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 7.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD1 REMARK 620 2 ASP A 193 OD2 52.8 REMARK 620 3 HIS A 197 NE2 97.9 90.0 REMARK 620 4 HIS A 260 NE2 87.8 140.6 95.4 REMARK 620 5 HIS A 272 NE2 90.2 94.0 171.8 86.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C75 RELATED DB: PDB REMARK 900 MONOCLINIC FORM OF THE SAME PROTEIN DBREF1 6C76 A 1 378 UNP A0A0Q2QQL1_9EURY DBREF2 6C76 A A0A0Q2QQL1 1 378 DBREF1 6C76 B 1 378 UNP A0A0Q2QQL1_9EURY DBREF2 6C76 B A0A0Q2QQL1 1 378 SEQRES 1 A 378 MET PHE TRP LEU LYS THR ARG ILE ILE GLU GLY GLU GLY SEQRES 2 A 378 SER LEU SER ARG LEU SER ARG GLU VAL LYS GLY HIS GLU SEQRES 3 A 378 ARG VAL LEU ILE LEU ALA SER GLY SER MET LYS ARG HIS SEQRES 4 A 378 GLY PHE LEU SER GLU ALA GLU ASP TYR VAL LYS GLU ALA SEQRES 5 A 378 GLY ALA GLU VAL PHE SER ILE ALA GLY LEU PRO ALA GLU SEQRES 6 A 378 PRO SER VAL GLU VAL ILE GLU GLU PHE LEU PRO LYS VAL SEQRES 7 A 378 ARG GLU PHE GLY PRO ASP LEU LEU VAL ALA MET GLY GLY SEQRES 8 A 378 GLY SER VAL ILE ASP THR THR LYS ALA LEU LYS VAL PHE SEQRES 9 A 378 TYR ASP ALA PRO GLU LEU ASN PHE GLY GLU ILE ALA PHE SEQRES 10 A 378 ILE ASP ARG PHE SER LYS PRO LYS PRO VAL PRO ARG LEU SEQRES 11 A 378 LYS THR LEU LEU ILE ALA ILE PRO SER THR SER GLY ALA SEQRES 12 A 378 GLY SER GLU VAL SER GLY ALA SER VAL LEU LYS LYS GLY SEQRES 13 A 378 GLY VAL LYS TYR ASN ILE VAL THR PRO GLU ILE ALA PRO SEQRES 14 A 378 ASP VAL ALA ILE LEU ASP PRO ARG LEU PRO ARG THR MET SEQRES 15 A 378 PRO PRO GLU VAL ALA ARG ASN SER GLY LEU ASP VAL LEU SEQRES 16 A 378 VAL HIS GLY ILE GLU ALA TYR THR THR LYS VAL ALA SER SEQRES 17 A 378 PRO PHE SER ASP ALA MET ALA ILE LYS ALA ILE LYS THR SEQRES 18 A 378 VAL TYR ARG TRP LEU PRO LEU SER VAL LYS GLY ASP GLU SEQRES 19 A 378 GLU ALA ARG ALA ARG VAL HIS TYR ALA ALA THR MET ALA SEQRES 20 A 378 GLY ILE ALA PHE LEU ASN ALA ARG LEU GLY LEU CYS HIS SEQRES 21 A 378 ALA MET SER HIS LYS ALA ALA TRP ILE GLY PRO HIS GLY SEQRES 22 A 378 LEU LEU ASN ALA VAL PHE LEU PRO TYR VAL MET GLU PHE SEQRES 23 A 378 ASN ALA SER LYS SER ASP TYR ALA ARG ARG ARG TYR ALA SEQRES 24 A 378 GLU ILE ALA ARG GLU LEU GLY PHE GLN THR ALA LYS ASP SEQRES 25 A 378 LEU ILE GLU VAL VAL LYS GLU LEU ASN GLU MET LEU GLY SEQRES 26 A 378 VAL PRO LYS LEU GLY GLU LEU VAL ASP GLU GLU THR PHE SEQRES 27 A 378 ALA SER LYS VAL GLU GLU MET ALA GLU LYS THR TYR HIS SEQRES 28 A 378 ASP GLY LEU ILE ALA PHE ASN PRO VAL GLU PRO LYS PRO SEQRES 29 A 378 GLU GLU ILE LYS GLU LEU TYR LEU LYS ALA TYR ARG GLY SEQRES 30 A 378 GLU SEQRES 1 B 378 MET PHE TRP LEU LYS THR ARG ILE ILE GLU GLY GLU GLY SEQRES 2 B 378 SER LEU SER ARG LEU SER ARG GLU VAL LYS GLY HIS GLU SEQRES 3 B 378 ARG VAL LEU ILE LEU ALA SER GLY SER MET LYS ARG HIS SEQRES 4 B 378 GLY PHE LEU SER GLU ALA GLU ASP TYR VAL LYS GLU ALA SEQRES 5 B 378 GLY ALA GLU VAL PHE SER ILE ALA GLY LEU PRO ALA GLU SEQRES 6 B 378 PRO SER VAL GLU VAL ILE GLU GLU PHE LEU PRO LYS VAL SEQRES 7 B 378 ARG GLU PHE GLY PRO ASP LEU LEU VAL ALA MET GLY GLY SEQRES 8 B 378 GLY SER VAL ILE ASP THR THR LYS ALA LEU LYS VAL PHE SEQRES 9 B 378 TYR ASP ALA PRO GLU LEU ASN PHE GLY GLU ILE ALA PHE SEQRES 10 B 378 ILE ASP ARG PHE SER LYS PRO LYS PRO VAL PRO ARG LEU SEQRES 11 B 378 LYS THR LEU LEU ILE ALA ILE PRO SER THR SER GLY ALA SEQRES 12 B 378 GLY SER GLU VAL SER GLY ALA SER VAL LEU LYS LYS GLY SEQRES 13 B 378 GLY VAL LYS TYR ASN ILE VAL THR PRO GLU ILE ALA PRO SEQRES 14 B 378 ASP VAL ALA ILE LEU ASP PRO ARG LEU PRO ARG THR MET SEQRES 15 B 378 PRO PRO GLU VAL ALA ARG ASN SER GLY LEU ASP VAL LEU SEQRES 16 B 378 VAL HIS GLY ILE GLU ALA TYR THR THR LYS VAL ALA SER SEQRES 17 B 378 PRO PHE SER ASP ALA MET ALA ILE LYS ALA ILE LYS THR SEQRES 18 B 378 VAL TYR ARG TRP LEU PRO LEU SER VAL LYS GLY ASP GLU SEQRES 19 B 378 GLU ALA ARG ALA ARG VAL HIS TYR ALA ALA THR MET ALA SEQRES 20 B 378 GLY ILE ALA PHE LEU ASN ALA ARG LEU GLY LEU CYS HIS SEQRES 21 B 378 ALA MET SER HIS LYS ALA ALA TRP ILE GLY PRO HIS GLY SEQRES 22 B 378 LEU LEU ASN ALA VAL PHE LEU PRO TYR VAL MET GLU PHE SEQRES 23 B 378 ASN ALA SER LYS SER ASP TYR ALA ARG ARG ARG TYR ALA SEQRES 24 B 378 GLU ILE ALA ARG GLU LEU GLY PHE GLN THR ALA LYS ASP SEQRES 25 B 378 LEU ILE GLU VAL VAL LYS GLU LEU ASN GLU MET LEU GLY SEQRES 26 B 378 VAL PRO LYS LEU GLY GLU LEU VAL ASP GLU GLU THR PHE SEQRES 27 B 378 ALA SER LYS VAL GLU GLU MET ALA GLU LYS THR TYR HIS SEQRES 28 B 378 ASP GLY LEU ILE ALA PHE ASN PRO VAL GLU PRO LYS PRO SEQRES 29 B 378 GLU GLU ILE LYS GLU LEU TYR LEU LYS ALA TYR ARG GLY SEQRES 30 B 378 GLU HET FE A 401 1 HET NAP A 402 73 HET ACY B 401 7 HET PGE B 402 24 HETNAM FE FE (III) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ACY ACETIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FE FE 3+ FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 ACY C2 H4 O2 FORMUL 6 PGE C6 H14 O4 FORMUL 7 HOH *293(H2 O) HELIX 1 AA1 GLY A 13 SER A 16 5 4 HELIX 2 AA2 ARG A 17 LYS A 23 1 7 HELIX 3 AA3 SER A 33 HIS A 39 1 7 HELIX 4 AA4 GLY A 40 ALA A 52 1 13 HELIX 5 AA5 GLU A 69 GLY A 82 1 14 HELIX 6 AA6 GLY A 91 ALA A 107 1 17 HELIX 7 AA7 ASN A 111 ALA A 116 1 6 HELIX 8 AA8 PRO A 165 ALA A 168 5 4 HELIX 9 AA9 LEU A 178 MET A 182 5 5 HELIX 10 AB1 PRO A 183 THR A 204 1 22 HELIX 11 AB2 SER A 208 LYS A 231 1 24 HELIX 12 AB3 ASP A 233 ARG A 255 1 23 HELIX 13 AB4 GLY A 257 ALA A 266 1 10 HELIX 14 AB5 ALA A 267 GLY A 270 5 4 HELIX 15 AB6 PRO A 271 SER A 291 1 21 HELIX 16 AB7 SER A 291 LEU A 305 1 15 HELIX 17 AB8 THR A 309 LEU A 324 1 16 HELIX 18 AB9 LYS A 328 LEU A 332 5 5 HELIX 19 AC1 ASP A 334 HIS A 351 1 18 HELIX 20 AC2 ASP A 352 ASN A 358 5 7 HELIX 21 AC3 LYS A 363 GLY A 377 1 15 HELIX 22 AC4 GLY B 13 SER B 16 5 4 HELIX 23 AC5 ARG B 17 LYS B 23 1 7 HELIX 24 AC6 SER B 33 HIS B 39 1 7 HELIX 25 AC7 GLY B 40 GLU B 51 1 12 HELIX 26 AC8 SER B 67 GLY B 82 1 16 HELIX 27 AC9 GLY B 91 ALA B 107 1 17 HELIX 28 AD1 ASN B 111 ALA B 116 5 6 HELIX 29 AD2 GLY B 144 SER B 148 5 5 HELIX 30 AD3 PRO B 165 ALA B 168 5 4 HELIX 31 AD4 LEU B 178 MET B 182 5 5 HELIX 32 AD5 PRO B 183 THR B 204 1 22 HELIX 33 AD6 SER B 208 LYS B 231 1 24 HELIX 34 AD7 ASP B 233 ARG B 255 1 23 HELIX 35 AD8 GLY B 257 LYS B 265 1 9 HELIX 36 AD9 ALA B 266 GLY B 270 5 5 HELIX 37 AE1 PRO B 271 SER B 291 1 21 HELIX 38 AE2 SER B 291 LEU B 305 1 15 HELIX 39 AE3 THR B 309 LEU B 324 1 16 HELIX 40 AE4 LYS B 328 LEU B 332 5 5 HELIX 41 AE5 ASP B 334 HIS B 351 1 18 HELIX 42 AE6 ASP B 352 PHE B 357 5 6 HELIX 43 AE7 LYS B 363 ARG B 376 1 14 SHEET 1 AA1 6 ARG A 7 GLU A 10 0 SHEET 2 AA1 6 VAL A 171 LEU A 174 1 O LEU A 174 N ILE A 9 SHEET 3 AA1 6 LEU A 133 PRO A 138 1 N ALA A 136 O VAL A 171 SHEET 4 AA1 6 LEU A 85 GLY A 90 1 N LEU A 86 O LEU A 133 SHEET 5 AA1 6 ARG A 27 ALA A 32 1 N LEU A 31 O VAL A 87 SHEET 6 AA1 6 GLU A 55 ALA A 60 1 O GLU A 55 N VAL A 28 SHEET 1 AA2 2 ALA A 150 LYS A 155 0 SHEET 2 AA2 2 VAL A 158 VAL A 163 -1 O ILE A 162 N SER A 151 SHEET 1 AA3 6 ARG B 7 GLU B 10 0 SHEET 2 AA3 6 VAL B 171 LEU B 174 1 O LEU B 174 N ILE B 9 SHEET 3 AA3 6 LEU B 133 PRO B 138 1 N ALA B 136 O VAL B 171 SHEET 4 AA3 6 LEU B 85 GLY B 90 1 N ALA B 88 O ILE B 135 SHEET 5 AA3 6 ARG B 27 ALA B 32 1 N LEU B 31 O VAL B 87 SHEET 6 AA3 6 GLU B 55 ALA B 60 1 O GLU B 55 N VAL B 28 SHEET 1 AA4 2 ALA B 150 LYS B 154 0 SHEET 2 AA4 2 LYS B 159 VAL B 163 -1 O TYR B 160 N LEU B 153 LINK OD1 ASP A 193 FE FE A 401 1555 1555 2.50 LINK OD2 ASP A 193 FE FE A 401 1555 1555 2.48 LINK NE2 HIS A 197 FE FE A 401 1555 1555 2.49 LINK NE2 HIS A 260 FE FE A 401 1555 1555 2.37 LINK NE2 HIS A 272 FE FE A 401 1555 1555 2.44 CISPEP 1 SER A 141 GLY A 142 0 3.49 CISPEP 2 SER B 141 GLY B 142 0 -15.49 SITE 1 AC1 5 ASP A 193 HIS A 197 HIS A 260 HIS A 272 SITE 2 AC1 5 NAP A 402 SITE 1 AC2 38 SER A 33 GLY A 34 SER A 35 MET A 36 SITE 2 AC2 38 ARG A 38 ALA A 64 GLY A 91 GLY A 92 SITE 3 AC2 38 SER A 93 ASP A 96 SER A 139 THR A 140 SITE 4 AC2 38 ALA A 143 SER A 145 SER A 148 ALA A 150 SITE 5 AC2 38 LYS A 159 LEU A 178 THR A 181 MET A 182 SITE 6 AC2 38 PRO A 183 VAL A 186 SER A 190 HIS A 197 SITE 7 AC2 38 PHE A 251 HIS A 272 FE A 401 HOH A 522 SITE 8 AC2 38 HOH A 528 HOH A 535 HOH A 541 HOH A 549 SITE 9 AC2 38 HOH A 568 HOH A 582 HOH A 590 HOH A 627 SITE 10 AC2 38 HOH A 633 GLU B 335 SITE 1 AC3 6 GLY B 91 GLY B 92 THR B 140 ALA B 143 SITE 2 AC3 6 HOH B 513 HOH B 546 SITE 1 AC4 4 LYS A 5 TRP B 3 LEU B 4 LYS B 5 CRYST1 48.920 111.978 142.081 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020441 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007038 0.00000