HEADER OXIDOREDUCTASE 22-JAN-18 6C7L TITLE STRUCTURE OF IRON CONTAINING ALCOHOL DEHYDROGENASE FROM THERMOCOCCUS TITLE 2 THIOREDUCENS IN A TETRAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 ATCC: BAA-394; SOURCE 5 GENE: AMR53_06445, SAMN05216170_0411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALCOHOL DEHYDROGENASE, IRON-CONTAINING, OXIDOREDUCTASE, OGL-20P EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JONES,S.B.LARSON,A.MCPHERSON REVDAT 3 04-OCT-23 6C7L 1 REMARK REVDAT 2 17-APR-19 6C7L 1 JRNL REVDAT 1 06-FEB-19 6C7L 0 JRNL AUTH S.B.LARSON,J.A.JONES,A.MCPHERSON JRNL TITL THE STRUCTURE OF AN IRON-CONTAINING ALCOHOL DEHYDROGENASE JRNL TITL 2 FROM A HYPERTHERMOPHILIC ARCHAEON IN TWO CHEMICAL STATES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 75 217 2019 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30950821 JRNL DOI 10.1107/S2053230X19001201 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 28792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1774 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3378 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3381 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4616 ; 1.122 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7778 ; 0.679 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;35.225 ;23.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;16.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3601 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 713 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2612 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6562 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3140 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3356 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.045 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 115 ; 0.278 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 133 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1570 ; 2.222 ; 3.119 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1569 ; 2.220 ; 3.116 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1976 ; 3.033 ; 4.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1977 ; 3.034 ; 4.670 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 3.425 ; 3.861 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1809 ; 3.424 ; 3.865 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2617 ; 5.235 ; 5.617 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2618 ; 5.234 ; 5.621 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4315 ; 9.389 ;29.044 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4316 ; 9.388 ;29.061 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7881 -31.4652 -3.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0265 REMARK 3 T33: 0.0863 T12: -0.0062 REMARK 3 T13: -0.0585 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1402 L22: 0.1576 REMARK 3 L33: 0.7549 L12: 0.1007 REMARK 3 L13: 0.0040 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0059 S13: -0.0747 REMARK 3 S21: -0.0068 S22: 0.0087 S23: 0.0066 REMARK 3 S31: 0.0861 S32: -0.0159 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5261 -11.8891 -13.9998 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.0856 REMARK 3 T33: 0.0704 T12: -0.0115 REMARK 3 T13: 0.0016 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.2064 L22: 0.8025 REMARK 3 L33: 0.5710 L12: 0.0331 REMARK 3 L13: -0.1606 L23: -0.2093 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.0319 S13: -0.0441 REMARK 3 S21: -0.0770 S22: -0.0494 S23: -0.1373 REMARK 3 S31: -0.0630 S32: 0.0260 S33: -0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE GENERATED IN REFMAC AND REMARK 3 ALLOWED TO RIDE THE ATOMS TO WHICH THEY WERE ATTACHED IN IDEAL REMARK 3 POSITIONS EXCEPT WHERE VAN DER WAALS CONTACTS ALTERED THEIR REMARK 3 POSITIONS. REMARK 4 REMARK 4 6C7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.909 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6C76 REMARK 200 REMARK 200 REMARK: TETRAGONAL BIPYRAMIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NH4H2PO4, PH 4.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.32200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.65200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.98300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.65200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.66100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.65200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 124.98300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.65200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.66100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -323.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 642 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 318 O HOH A 521 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 953 O HOH A 959 7655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 127.42 -38.89 REMARK 500 ASP A 119 -167.68 -161.06 REMARK 500 ARG A 255 -173.81 69.34 REMARK 500 PHE A 307 -151.41 -119.71 REMARK 500 GLN A 308 -43.62 -136.29 REMARK 500 GLN A 308 -44.26 -135.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 962 DISTANCE = 6.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C75 RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF SAME PROTEIN REMARK 900 RELATED ID: 6C76 RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM OF SAME PROTEIN DBREF1 6C7L A 1 378 UNP A0A0Q2QQL1_9EURY DBREF2 6C7L A A0A0Q2QQL1 1 378 SEQRES 1 A 378 MET PHE TRP LEU LYS THR ARG ILE ILE GLU GLY GLU GLY SEQRES 2 A 378 SER LEU SER ARG LEU SER ARG GLU VAL LYS GLY HIS GLU SEQRES 3 A 378 ARG VAL LEU ILE LEU ALA SER GLY SER MET LYS ARG HIS SEQRES 4 A 378 GLY PHE LEU SER GLU ALA GLU ASP TYR VAL LYS GLU ALA SEQRES 5 A 378 GLY ALA GLU VAL PHE SER ILE ALA GLY LEU PRO ALA GLU SEQRES 6 A 378 PRO SER VAL GLU VAL ILE GLU GLU PHE LEU PRO LYS VAL SEQRES 7 A 378 ARG GLU PHE GLY PRO ASP LEU LEU VAL ALA MET GLY GLY SEQRES 8 A 378 GLY SER VAL ILE ASP THR THR LYS ALA LEU LYS VAL PHE SEQRES 9 A 378 TYR ASP ALA PRO GLU LEU ASN PHE GLY GLU ILE ALA PHE SEQRES 10 A 378 ILE ASP ARG PHE SER LYS PRO LYS PRO VAL PRO ARG LEU SEQRES 11 A 378 LYS THR LEU LEU ILE ALA ILE PRO SER THR SER GLY ALA SEQRES 12 A 378 GLY SER GLU VAL SER GLY ALA SER VAL LEU LYS LYS GLY SEQRES 13 A 378 GLY VAL LYS TYR ASN ILE VAL THR PRO GLU ILE ALA PRO SEQRES 14 A 378 ASP VAL ALA ILE LEU ASP PRO ARG LEU PRO ARG THR MET SEQRES 15 A 378 PRO PRO GLU VAL ALA ARG ASN SER GLY LEU ASP VAL LEU SEQRES 16 A 378 VAL HIS GLY ILE GLU ALA TYR THR THR LYS VAL ALA SER SEQRES 17 A 378 PRO PHE SER ASP ALA MET ALA ILE LYS ALA ILE LYS THR SEQRES 18 A 378 VAL TYR ARG TRP LEU PRO LEU SER VAL LYS GLY ASP GLU SEQRES 19 A 378 GLU ALA ARG ALA ARG VAL HIS TYR ALA ALA THR MET ALA SEQRES 20 A 378 GLY ILE ALA PHE LEU ASN ALA ARG LEU GLY LEU CYS HIS SEQRES 21 A 378 ALA MET SER HIS LYS ALA ALA TRP ILE GLY PRO HIS GLY SEQRES 22 A 378 LEU LEU ASN ALA VAL PHE LEU PRO TYR VAL MET GLU PHE SEQRES 23 A 378 ASN ALA SER LYS SER ASP TYR ALA ARG ARG ARG TYR ALA SEQRES 24 A 378 GLU ILE ALA ARG GLU LEU GLY PHE GLN THR ALA LYS ASP SEQRES 25 A 378 LEU ILE GLU VAL VAL LYS GLU LEU ASN GLU MET LEU GLY SEQRES 26 A 378 VAL PRO LYS LEU GLY GLU LEU VAL ASP GLU GLU THR PHE SEQRES 27 A 378 ALA SER LYS VAL GLU GLU MET ALA GLU LYS THR TYR HIS SEQRES 28 A 378 ASP GLY LEU ILE ALA PHE ASN PRO VAL GLU PRO LYS PRO SEQRES 29 A 378 GLU GLU ILE LYS GLU LEU TYR LEU LYS ALA TYR ARG GLY SEQRES 30 A 378 GLU HET ATR A 401 42 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HET PO4 A 406 5 HET PO4 A 407 5 HET PO4 A 408 5 HET PO4 A 409 5 HET PO4 A 410 5 HET PO4 A 411 5 HET PO4 A 412 5 HET PO4 A 413 5 HET PO4 A 414 5 HET PO4 A 415 5 HET PO4 A 416 5 HET PO4 A 417 5 HET PO4 A 418 5 HET PO4 A 419 5 HET PO4 A 420 5 HET EDO A 421 10 HET MPD A 422 22 HETNAM ATR 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ATR C10 H16 N5 O13 P3 FORMUL 3 PO4 19(O4 P 3-) FORMUL 22 EDO C2 H6 O2 FORMUL 23 MPD C6 H14 O2 FORMUL 24 HOH *462(H2 O) HELIX 1 AA1 GLY A 13 SER A 16 5 4 HELIX 2 AA2 ARG A 17 LYS A 23 1 7 HELIX 3 AA3 SER A 33 HIS A 39 1 7 HELIX 4 AA4 GLY A 40 ALA A 52 1 13 HELIX 5 AA5 SER A 67 GLY A 82 1 16 HELIX 6 AA6 GLY A 91 ALA A 107 1 17 HELIX 7 AA7 ASN A 111 ALA A 116 1 6 HELIX 8 AA8 PRO A 165 ALA A 168 5 4 HELIX 9 AA9 LEU A 178 MET A 182 5 5 HELIX 10 AB1 PRO A 183 THR A 204 1 22 HELIX 11 AB2 SER A 208 LYS A 231 1 24 HELIX 12 AB3 ASP A 233 ARG A 255 1 23 HELIX 13 AB4 GLY A 257 ALA A 266 1 10 HELIX 14 AB5 ALA A 267 GLY A 270 5 4 HELIX 15 AB6 PRO A 271 SER A 291 1 21 HELIX 16 AB7 SER A 291 LEU A 305 1 15 HELIX 17 AB8 THR A 309 LEU A 324 1 16 HELIX 18 AB9 LYS A 328 LEU A 332 5 5 HELIX 19 AC1 ASP A 334 ASP A 352 1 19 HELIX 20 AC2 GLY A 353 ASN A 358 5 6 HELIX 21 AC3 LYS A 363 GLY A 377 1 15 SHEET 1 AA1 6 ARG A 7 GLU A 10 0 SHEET 2 AA1 6 VAL A 171 LEU A 174 1 O LEU A 174 N ILE A 9 SHEET 3 AA1 6 LEU A 133 PRO A 138 1 N ALA A 136 O VAL A 171 SHEET 4 AA1 6 LEU A 85 GLY A 90 1 N ALA A 88 O ILE A 137 SHEET 5 AA1 6 ARG A 27 ALA A 32 1 N LEU A 31 O VAL A 87 SHEET 6 AA1 6 GLU A 55 ALA A 60 1 O ILE A 59 N ILE A 30 SHEET 1 AA2 2 ALA A 150 LYS A 155 0 SHEET 2 AA2 2 VAL A 158 VAL A 163 -1 O TYR A 160 N LEU A 153 CISPEP 1 SER A 141 GLY A 142 0 -2.61 SITE 1 AC1 36 SER A 33 SER A 35 MET A 36 ARG A 38 SITE 2 AC1 36 GLY A 91 GLY A 92 SER A 93 SER A 139 SITE 3 AC1 36 THR A 140 LEU A 178 THR A 181 PRO A 183 SITE 4 AC1 36 VAL A 186 HIS A 272 PO4 A 405 PO4 A 407 SITE 5 AC1 36 PO4 A 415 HOH A 503 HOH A 509 HOH A 512 SITE 6 AC1 36 HOH A 515 HOH A 520 HOH A 533 HOH A 620 SITE 7 AC1 36 HOH A 726 HOH A 731 HOH A 740 HOH A 777 SITE 8 AC1 36 HOH A 798 HOH A 815 HOH A 881 HOH A 901 SITE 9 AC1 36 HOH A 926 HOH A 945 HOH A 947 HOH A 962 SITE 1 AC2 7 ASP A 193 HIS A 197 HIS A 260 HIS A 264 SITE 2 AC2 7 ASN A 276 HOH A 634 HOH A 807 SITE 1 AC3 11 PRO A 209 ASP A 212 LYS A 217 ARG A 297 SITE 2 AC3 11 PO4 A 404 PO4 A 408 HOH A 501 HOH A 516 SITE 3 AC3 11 HOH A 524 HOH A 540 HOH A 684 SITE 1 AC4 5 ARG A 239 ARG A 296 ARG A 297 GLU A 300 SITE 2 AC4 5 PO4 A 403 SITE 1 AC5 9 GLY A 34 SER A 35 ARG A 38 ATR A 401 SITE 2 AC5 9 HOH A 520 HOH A 563 HOH A 695 HOH A 724 SITE 3 AC5 9 HOH A 815 SITE 1 AC6 11 ASN A 161 HIS A 264 LYS A 265 ASP A 352 SITE 2 AC6 11 LEU A 354 PO4 A 417 HOH A 510 HOH A 532 SITE 3 AC6 11 HOH A 599 HOH A 759 HOH A 823 SITE 1 AC7 13 GLY A 91 GLY A 92 THR A 140 GLY A 142 SITE 2 AC7 13 ALA A 143 SER A 190 HIS A 272 ATR A 401 SITE 3 AC7 13 HOH A 503 HOH A 509 HOH A 703 HOH A 740 SITE 4 AC7 13 HOH A 807 SITE 1 AC8 9 LYS A 217 THR A 221 ARG A 224 TRP A 225 SITE 2 AC8 9 PO4 A 403 PO4 A 409 HOH A 516 HOH A 540 SITE 3 AC8 9 HOH A 672 SITE 1 AC9 5 LYS A 220 ARG A 224 PO4 A 408 HOH A 536 SITE 2 AC9 5 HOH A 556 SITE 1 AD1 1 GLY A 61 SITE 1 AD2 11 MET A 1 ILE A 9 GLU A 10 ARG A 17 SITE 2 AD2 11 PO4 A 412 HOH A 506 HOH A 661 HOH A 766 SITE 3 AD2 11 HOH A 814 HOH A 853 HOH A 910 SITE 1 AD3 10 MET A 1 ARG A 17 ARG A 20 PO4 A 411 SITE 2 AD3 10 HOH A 506 HOH A 722 HOH A 766 HOH A 814 SITE 3 AD3 10 HOH A 853 HOH A 910 SITE 1 AD4 4 TYR A 105 PRO A 108 PO4 A 414 HOH A 514 SITE 1 AD5 8 TYR A 105 ASP A 106 LYS A 131 PO4 A 413 SITE 2 AD5 8 HOH A 586 HOH A 653 HOH A 716 HOH A 805 SITE 1 AD6 12 SER A 35 ARG A 38 HIS A 39 THR A 181 SITE 2 AD6 12 PRO A 183 ATR A 401 PO4 A 416 HOH A 511 SITE 3 AD6 12 HOH A 588 HOH A 850 HOH A 864 HOH A 932 SITE 1 AD7 11 ARG A 38 HIS A 39 GLU A 347 TYR A 350 SITE 2 AD7 11 HIS A 351 PO4 A 415 HOH A 806 HOH A 864 SITE 3 AD7 11 HOH A 868 HOH A 907 HOH A 932 SITE 1 AD8 8 VAL A 163 LEU A 354 PO4 A 406 HOH A 599 SITE 2 AD8 8 HOH A 670 HOH A 761 HOH A 923 HOH A 961 SITE 1 AD9 12 SER A 16 ARG A 17 ASN A 111 PHE A 112 SITE 2 AD9 12 GLY A 113 LYS A 155 EDO A 421 HOH A 580 SITE 3 AD9 12 HOH A 774 HOH A 827 HOH A 837 HOH A 890 SITE 1 AE1 7 LYS A 37 LEU A 42 SER A 58 ALA A 60 SITE 2 AE1 7 HOH A 546 HOH A 738 HOH A 801 SITE 1 AE2 8 GLU A 65 LYS A 154 LYS A 159 ALA A 267 SITE 2 AE2 8 TRP A 268 HOH A 551 HOH A 817 HOH A 839 SITE 1 AE3 5 ARG A 20 LYS A 155 PO4 A 418 HOH A 689 SITE 2 AE3 5 HOH A 774 SITE 1 AE4 4 PHE A 307 ASP A 312 GLU A 315 GLU A 336 CRYST1 69.304 69.304 166.644 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006001 0.00000