HEADER OXIDOREDUCTASE 23-JAN-18 6C7O TITLE CRYSTAL STRUCTURE OF D477G ACO/RPE65 CHIMERA, TRIGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOCAROTENOID-15,15'-OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACO,8'-APO-BETA-CAROTENAL 15,15'-OXYGENASE,DIOX1; COMPND 5 EC: 1.13.11.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: SLL1541; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON, CHIMERA, 7-BLADED PROPELLER, DOMINANT MUTATION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.D.KISER,W.SHI REVDAT 5 04-OCT-23 6C7O 1 REMARK REVDAT 4 11-DEC-19 6C7O 1 REMARK REVDAT 3 08-MAY-19 6C7O 1 JRNL REVDAT 2 20-FEB-19 6C7O 1 REMARK REVDAT 1 25-APR-18 6C7O 0 JRNL AUTH E.H.CHOI,S.SUH,C.L.SANDER,C.J.O.HERNANDEZ,E.R.BULMAN, JRNL AUTH 2 N.KHADKA,Z.DONG,W.SHI,K.PALCZEWSKI,P.D.KISER JRNL TITL INSIGHTS INTO THE PATHOGENESIS OF DOMINANT RETINITIS JRNL TITL 2 PIGMENTOSA ASSOCIATED WITH A D477G MUTATION IN RPE65. JRNL REF HUM.MOL.GENET. V. 27 2225 2018 JRNL REFN ESSN 1460-2083 JRNL PMID 29659842 JRNL DOI 10.1093/HMG/DDY128 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1764 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.5280 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 164.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.58000 REMARK 3 B22 (A**2) : -8.58000 REMARK 3 B33 (A**2) : 27.85000 REMARK 3 B12 (A**2) : -4.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.475 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.607 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7768 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7010 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10566 ; 0.968 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16290 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 956 ; 4.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;30.001 ;23.825 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1200 ;12.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;11.922 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1122 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8734 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1638 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3830 ; 3.498 ;16.740 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3829 ; 3.498 ;16.740 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4784 ; 5.941 ;25.113 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4785 ; 5.940 ;25.113 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3936 ; 2.753 ;16.852 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3936 ; 2.751 ;16.852 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5782 ; 4.810 ;25.206 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8025 ; 8.199 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8024 ; 8.199 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 12 490 B 12 490 30086 0.02 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-17; 22-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS-II REMARK 200 BEAMLINE : 24-ID-E; 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918; 0.918401 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M; DECTRIS REMARK 200 EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25537 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.00 REMARK 200 R MERGE FOR SHELL (I) : 2.91600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6C7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, PH 6 AND 21% REMARK 280 W/V SODIUM POLYACRYLATE 2100, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -Y,-X,-Z REMARK 290 5555 -X+Y,Y,-Z REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 SER B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 99.93 -165.31 REMARK 500 LEU A 46 98.05 -68.68 REMARK 500 ASP A 62 42.81 -142.26 REMARK 500 ASP A 83 28.81 -147.62 REMARK 500 GLN A 89 119.99 -161.36 REMARK 500 ILE A 108 -64.96 -104.98 REMARK 500 PHE A 113 49.35 -100.35 REMARK 500 GLU A 176 91.06 -67.47 REMARK 500 SER A 207 -140.58 -153.41 REMARK 500 ASP A 331 -73.98 -78.44 REMARK 500 SER A 336 56.20 -107.85 REMARK 500 TYR A 481 101.27 -46.51 REMARK 500 LEU A 483 -101.66 -96.44 REMARK 500 ASP B 32 100.00 -164.94 REMARK 500 LEU B 46 98.17 -68.99 REMARK 500 ASP B 62 43.11 -142.49 REMARK 500 ASP B 83 28.82 -147.40 REMARK 500 GLN B 89 119.90 -161.36 REMARK 500 ILE B 108 -64.93 -104.95 REMARK 500 PHE B 113 49.29 -100.34 REMARK 500 GLU B 176 90.80 -67.01 REMARK 500 SER B 207 -140.58 -153.37 REMARK 500 ASP B 331 -74.04 -78.61 REMARK 500 SER B 336 56.63 -108.01 REMARK 500 TYR B 481 101.48 -46.46 REMARK 500 LEU B 483 -101.64 -96.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HIS A 238 NE2 100.2 REMARK 620 3 HIS A 304 NE2 107.7 106.0 REMARK 620 4 HIS A 484 NE2 93.6 142.1 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 NE2 REMARK 620 2 HIS B 238 NE2 100.2 REMARK 620 3 HIS B 304 NE2 107.9 106.3 REMARK 620 4 HIS B 484 NE2 93.6 141.5 103.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 501 DBREF 6C7O A 1 490 UNP P74334 ACOX_SYNY3 1 490 DBREF 6C7O B 1 490 UNP P74334 ACOX_SYNY3 1 490 SEQADV 6C7O LEU A 44 UNP P74334 PRO 44 ENGINEERED MUTATION SEQADV 6C7O TRP A 45 UNP P74334 ASP 45 ENGINEERED MUTATION SEQADV 6C7O SER A 431 UNP P74334 PRO 431 ENGINEERED MUTATION SEQADV 6C7O HIS A 432 UNP P74334 ARG 432 ENGINEERED MUTATION SEQADV 6C7O ALA A 435 UNP P74334 GLY 435 ENGINEERED MUTATION SEQADV 6C7O LEU A 436 UNP P74334 VAL 436 ENGINEERED MUTATION SEQADV 6C7O GLU A 437 UNP P74334 ALA 437 ENGINEERED MUTATION SEQADV 6C7O VAL A 442 UNP P74334 TRP 442 ENGINEERED MUTATION SEQADV 6C7O ASN A 461 UNP P74334 ASP 461 ENGINEERED MUTATION SEQADV 6C7O LYS A 463 UNP P74334 GLN 463 ENGINEERED MUTATION SEQADV 6C7O LEU B 44 UNP P74334 PRO 44 ENGINEERED MUTATION SEQADV 6C7O TRP B 45 UNP P74334 ASP 45 ENGINEERED MUTATION SEQADV 6C7O SER B 431 UNP P74334 PRO 431 ENGINEERED MUTATION SEQADV 6C7O HIS B 432 UNP P74334 ARG 432 ENGINEERED MUTATION SEQADV 6C7O ALA B 435 UNP P74334 GLY 435 ENGINEERED MUTATION SEQADV 6C7O LEU B 436 UNP P74334 VAL 436 ENGINEERED MUTATION SEQADV 6C7O GLU B 437 UNP P74334 ALA 437 ENGINEERED MUTATION SEQADV 6C7O VAL B 442 UNP P74334 TRP 442 ENGINEERED MUTATION SEQADV 6C7O ASN B 461 UNP P74334 ASP 461 ENGINEERED MUTATION SEQADV 6C7O LYS B 463 UNP P74334 GLN 463 ENGINEERED MUTATION SEQRES 1 A 490 MET VAL THR SER PRO PRO THR SER SER PRO SER GLN ARG SEQRES 2 A 490 SER TYR SER PRO GLN ASP TRP LEU ARG GLY TYR GLN SER SEQRES 3 A 490 GLN PRO GLN GLU TRP ASP TYR TRP VAL GLU ASP VAL GLU SEQRES 4 A 490 GLY SER ILE PRO LEU TRP LEU GLN GLY THR LEU TYR ARG SEQRES 5 A 490 ASN GLY PRO GLY LEU LEU GLU ILE GLY ASP ARG PRO LEU SEQRES 6 A 490 LYS HIS PRO PHE ASP GLY ASP GLY MET VAL THR ALA PHE SEQRES 7 A 490 LYS PHE PRO GLY ASP GLY ARG VAL HIS PHE GLN SER LYS SEQRES 8 A 490 PHE VAL ARG THR GLN GLY TYR VAL GLU GLU GLN LYS ALA SEQRES 9 A 490 GLY LYS MET ILE TYR ARG GLY VAL PHE GLY SER GLN PRO SEQRES 10 A 490 ALA GLY GLY TRP LEU LYS THR ILE PHE ASP LEU ARG LEU SEQRES 11 A 490 LYS ASN ILE ALA ASN THR ASN ILE THR TYR TRP GLY ASP SEQRES 12 A 490 ARG LEU LEU ALA LEU TRP GLU GLY GLY GLN PRO HIS ARG SEQRES 13 A 490 LEU GLU PRO SER ASN LEU ALA THR ILE GLY LEU ASP ASP SEQRES 14 A 490 LEU GLY GLY ILE LEU ALA GLU GLY GLN PRO LEU SER ALA SEQRES 15 A 490 HIS PRO ARG ILE ASP PRO ALA SER THR PHE ASP GLY GLY SEQRES 16 A 490 GLN PRO CYS TYR VAL THR PHE SER ILE LYS SER SER LEU SEQRES 17 A 490 SER SER THR LEU THR LEU LEU GLU LEU ASP PRO GLN GLY SEQRES 18 A 490 LYS LEU LEU ARG GLN LYS THR GLU THR PHE PRO GLY PHE SEQRES 19 A 490 ALA PHE ILE HIS ASP PHE ALA ILE THR PRO HIS TYR ALA SEQRES 20 A 490 ILE PHE LEU GLN ASN ASN VAL THR LEU ASN GLY LEU PRO SEQRES 21 A 490 TYR LEU PHE GLY LEU ARG GLY ALA GLY GLU CYS VAL GLN SEQRES 22 A 490 PHE HIS PRO ASP LYS PRO ALA GLN ILE ILE LEU VAL PRO SEQRES 23 A 490 ARG ASP GLY GLY GLU ILE LYS ARG ILE PRO VAL GLN ALA SEQRES 24 A 490 GLY PHE VAL PHE HIS HIS ALA ASN ALA PHE GLU GLU ASN SEQRES 25 A 490 GLY LYS ILE ILE LEU ASP SER ILE CYS TYR ASN SER LEU SEQRES 26 A 490 PRO GLN VAL ASP THR ASP GLY ASP PHE ARG SER THR ASN SEQRES 27 A 490 PHE ASP ASN LEU ASP PRO GLY GLN LEU TRP ARG PHE THR SEQRES 28 A 490 ILE ASP PRO ALA ALA ALA THR VAL GLU LYS GLN LEU MET SEQRES 29 A 490 VAL SER ARG CYS CYS GLU PHE PRO VAL VAL HIS PRO GLN SEQRES 30 A 490 GLN VAL GLY ARG PRO TYR ARG TYR VAL TYR MET GLY ALA SEQRES 31 A 490 ALA HIS HIS SER THR GLY ASN ALA PRO LEU GLN ALA ILE SEQRES 32 A 490 LEU LYS VAL ASP LEU GLU SER GLY THR GLU THR LEU ARG SEQRES 33 A 490 SER PHE ALA PRO HIS GLY PHE ALA GLY GLU PRO ILE PHE SEQRES 34 A 490 VAL SER HIS PRO GLY ALA LEU GLU GLU ASP ASP GLY VAL SEQRES 35 A 490 LEU LEU CYS LEU ILE TYR LYS ALA ASP LEU HIS ARG SER SEQRES 36 A 490 GLU LEU VAL ILE LEU ASN ALA LYS ASP ILE THR ALA PRO SEQRES 37 A 490 ALA ILE ALA THR LEU LYS LEU LYS HIS HIS ILE PRO TYR SEQRES 38 A 490 PRO LEU HIS GLY SER TRP ALA GLN THR SEQRES 1 B 490 MET VAL THR SER PRO PRO THR SER SER PRO SER GLN ARG SEQRES 2 B 490 SER TYR SER PRO GLN ASP TRP LEU ARG GLY TYR GLN SER SEQRES 3 B 490 GLN PRO GLN GLU TRP ASP TYR TRP VAL GLU ASP VAL GLU SEQRES 4 B 490 GLY SER ILE PRO LEU TRP LEU GLN GLY THR LEU TYR ARG SEQRES 5 B 490 ASN GLY PRO GLY LEU LEU GLU ILE GLY ASP ARG PRO LEU SEQRES 6 B 490 LYS HIS PRO PHE ASP GLY ASP GLY MET VAL THR ALA PHE SEQRES 7 B 490 LYS PHE PRO GLY ASP GLY ARG VAL HIS PHE GLN SER LYS SEQRES 8 B 490 PHE VAL ARG THR GLN GLY TYR VAL GLU GLU GLN LYS ALA SEQRES 9 B 490 GLY LYS MET ILE TYR ARG GLY VAL PHE GLY SER GLN PRO SEQRES 10 B 490 ALA GLY GLY TRP LEU LYS THR ILE PHE ASP LEU ARG LEU SEQRES 11 B 490 LYS ASN ILE ALA ASN THR ASN ILE THR TYR TRP GLY ASP SEQRES 12 B 490 ARG LEU LEU ALA LEU TRP GLU GLY GLY GLN PRO HIS ARG SEQRES 13 B 490 LEU GLU PRO SER ASN LEU ALA THR ILE GLY LEU ASP ASP SEQRES 14 B 490 LEU GLY GLY ILE LEU ALA GLU GLY GLN PRO LEU SER ALA SEQRES 15 B 490 HIS PRO ARG ILE ASP PRO ALA SER THR PHE ASP GLY GLY SEQRES 16 B 490 GLN PRO CYS TYR VAL THR PHE SER ILE LYS SER SER LEU SEQRES 17 B 490 SER SER THR LEU THR LEU LEU GLU LEU ASP PRO GLN GLY SEQRES 18 B 490 LYS LEU LEU ARG GLN LYS THR GLU THR PHE PRO GLY PHE SEQRES 19 B 490 ALA PHE ILE HIS ASP PHE ALA ILE THR PRO HIS TYR ALA SEQRES 20 B 490 ILE PHE LEU GLN ASN ASN VAL THR LEU ASN GLY LEU PRO SEQRES 21 B 490 TYR LEU PHE GLY LEU ARG GLY ALA GLY GLU CYS VAL GLN SEQRES 22 B 490 PHE HIS PRO ASP LYS PRO ALA GLN ILE ILE LEU VAL PRO SEQRES 23 B 490 ARG ASP GLY GLY GLU ILE LYS ARG ILE PRO VAL GLN ALA SEQRES 24 B 490 GLY PHE VAL PHE HIS HIS ALA ASN ALA PHE GLU GLU ASN SEQRES 25 B 490 GLY LYS ILE ILE LEU ASP SER ILE CYS TYR ASN SER LEU SEQRES 26 B 490 PRO GLN VAL ASP THR ASP GLY ASP PHE ARG SER THR ASN SEQRES 27 B 490 PHE ASP ASN LEU ASP PRO GLY GLN LEU TRP ARG PHE THR SEQRES 28 B 490 ILE ASP PRO ALA ALA ALA THR VAL GLU LYS GLN LEU MET SEQRES 29 B 490 VAL SER ARG CYS CYS GLU PHE PRO VAL VAL HIS PRO GLN SEQRES 30 B 490 GLN VAL GLY ARG PRO TYR ARG TYR VAL TYR MET GLY ALA SEQRES 31 B 490 ALA HIS HIS SER THR GLY ASN ALA PRO LEU GLN ALA ILE SEQRES 32 B 490 LEU LYS VAL ASP LEU GLU SER GLY THR GLU THR LEU ARG SEQRES 33 B 490 SER PHE ALA PRO HIS GLY PHE ALA GLY GLU PRO ILE PHE SEQRES 34 B 490 VAL SER HIS PRO GLY ALA LEU GLU GLU ASP ASP GLY VAL SEQRES 35 B 490 LEU LEU CYS LEU ILE TYR LYS ALA ASP LEU HIS ARG SER SEQRES 36 B 490 GLU LEU VAL ILE LEU ASN ALA LYS ASP ILE THR ALA PRO SEQRES 37 B 490 ALA ILE ALA THR LEU LYS LEU LYS HIS HIS ILE PRO TYR SEQRES 38 B 490 PRO LEU HIS GLY SER TRP ALA GLN THR HET FE2 A 501 1 HET FE2 B 501 1 HETNAM FE2 FE (II) ION FORMUL 3 FE2 2(FE 2+) FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 SER A 16 GLN A 25 1 10 HELIX 2 AA2 HIS A 67 GLY A 71 5 5 HELIX 3 AA3 THR A 95 GLY A 105 1 11 HELIX 4 AA4 GLY A 119 ILE A 125 1 7 HELIX 5 AA5 GLY A 258 GLY A 264 1 7 HELIX 6 AA6 GLY A 267 CYS A 271 1 5 HELIX 7 AA7 ASP A 333 THR A 337 5 5 HELIX 8 AA8 HIS A 375 VAL A 379 5 5 HELIX 9 AA9 SER B 16 GLN B 25 1 10 HELIX 10 AB1 HIS B 67 GLY B 71 5 5 HELIX 11 AB2 THR B 95 GLY B 105 1 11 HELIX 12 AB3 GLY B 119 ILE B 125 1 7 HELIX 13 AB4 GLY B 258 GLY B 264 1 7 HELIX 14 AB5 GLY B 267 CYS B 271 1 5 HELIX 15 AB6 ASP B 333 THR B 337 5 5 HELIX 16 AB7 HIS B 375 VAL B 379 5 5 SHEET 1 AA1 5 TRP A 31 TRP A 34 0 SHEET 2 AA1 5 HIS A 87 PHE A 92 -1 O PHE A 88 N TYR A 33 SHEET 3 AA1 5 MET A 74 PHE A 80 -1 N LYS A 79 O HIS A 87 SHEET 4 AA1 5 GLY A 48 ARG A 52 -1 N GLY A 48 O PHE A 80 SHEET 5 AA1 5 GLY A 485 GLN A 489 -1 O ALA A 488 N THR A 49 SHEET 1 AA2 5 VAL A 38 GLY A 40 0 SHEET 2 AA2 5 ALA A 471 LYS A 474 -1 O THR A 472 N GLU A 39 SHEET 3 AA2 5 ARG A 454 ASN A 461 -1 N LEU A 457 O LEU A 473 SHEET 4 AA2 5 GLY A 441 LYS A 449 -1 N ILE A 447 O GLU A 456 SHEET 5 AA2 5 GLY A 422 PHE A 423 -1 N PHE A 423 O TYR A 448 SHEET 1 AA3 5 VAL A 38 GLY A 40 0 SHEET 2 AA3 5 ALA A 471 LYS A 474 -1 O THR A 472 N GLU A 39 SHEET 3 AA3 5 ARG A 454 ASN A 461 -1 N LEU A 457 O LEU A 473 SHEET 4 AA3 5 GLY A 441 LYS A 449 -1 N ILE A 447 O GLU A 456 SHEET 5 AA3 5 PHE A 429 SER A 431 -1 N VAL A 430 O VAL A 442 SHEET 1 AA4 4 ASN A 137 TYR A 140 0 SHEET 2 AA4 4 LEU A 145 LEU A 148 -1 O LEU A 146 N THR A 139 SHEET 3 AA4 4 HIS A 155 LEU A 157 -1 O HIS A 155 N ALA A 147 SHEET 4 AA4 4 THR A 164 LEU A 167 -1 O ILE A 165 N ARG A 156 SHEET 1 AA5 4 ARG A 185 ASP A 187 0 SHEET 2 AA5 4 CYS A 198 LYS A 205 -1 O VAL A 200 N ARG A 185 SHEET 3 AA5 4 SER A 209 LEU A 217 -1 O THR A 211 N LYS A 205 SHEET 4 AA5 4 THR A 228 PRO A 232 -1 O GLU A 229 N LEU A 212 SHEET 1 AA6 3 PHE A 249 GLN A 251 0 SHEET 2 AA6 3 ALA A 280 LEU A 284 -1 O GLN A 281 N GLN A 251 SHEET 3 AA6 3 LYS A 293 VAL A 297 -1 O ILE A 295 N ILE A 282 SHEET 1 AA7 2 VAL A 254 LEU A 256 0 SHEET 2 AA7 2 VAL A 272 PHE A 274 -1 O GLN A 273 N THR A 255 SHEET 1 AA8 4 PHE A 301 GLU A 311 0 SHEET 2 AA8 4 LYS A 314 TYR A 322 -1 O ILE A 320 N HIS A 304 SHEET 3 AA8 4 GLY A 345 ASP A 353 -1 O ILE A 352 N ILE A 315 SHEET 4 AA8 4 THR A 358 VAL A 365 -1 O GLN A 362 N ARG A 349 SHEET 1 AA9 4 CYS A 369 VAL A 373 0 SHEET 2 AA9 4 TYR A 385 ALA A 390 -1 O GLY A 389 N GLU A 370 SHEET 3 AA9 4 ALA A 402 ASP A 407 -1 O LEU A 404 N MET A 388 SHEET 4 AA9 4 GLU A 413 SER A 417 -1 O THR A 414 N LYS A 405 SHEET 1 AB1 5 TRP B 31 TRP B 34 0 SHEET 2 AB1 5 HIS B 87 PHE B 92 -1 O PHE B 88 N TYR B 33 SHEET 3 AB1 5 MET B 74 PHE B 80 -1 N LYS B 79 O HIS B 87 SHEET 4 AB1 5 GLY B 48 ARG B 52 -1 N GLY B 48 O PHE B 80 SHEET 5 AB1 5 GLY B 485 GLN B 489 -1 O ALA B 488 N THR B 49 SHEET 1 AB2 5 VAL B 38 GLY B 40 0 SHEET 2 AB2 5 ALA B 471 LYS B 474 -1 O THR B 472 N GLU B 39 SHEET 3 AB2 5 ARG B 454 ASN B 461 -1 N LEU B 457 O LEU B 473 SHEET 4 AB2 5 GLY B 441 LYS B 449 -1 N ILE B 447 O GLU B 456 SHEET 5 AB2 5 GLY B 422 PHE B 423 -1 N PHE B 423 O TYR B 448 SHEET 1 AB3 5 VAL B 38 GLY B 40 0 SHEET 2 AB3 5 ALA B 471 LYS B 474 -1 O THR B 472 N GLU B 39 SHEET 3 AB3 5 ARG B 454 ASN B 461 -1 N LEU B 457 O LEU B 473 SHEET 4 AB3 5 GLY B 441 LYS B 449 -1 N ILE B 447 O GLU B 456 SHEET 5 AB3 5 PHE B 429 SER B 431 -1 N VAL B 430 O VAL B 442 SHEET 1 AB4 4 ASN B 137 TYR B 140 0 SHEET 2 AB4 4 LEU B 145 LEU B 148 -1 O LEU B 146 N THR B 139 SHEET 3 AB4 4 HIS B 155 LEU B 157 -1 O HIS B 155 N ALA B 147 SHEET 4 AB4 4 THR B 164 LEU B 167 -1 O ILE B 165 N ARG B 156 SHEET 1 AB5 4 ARG B 185 ASP B 187 0 SHEET 2 AB5 4 CYS B 198 LYS B 205 -1 O VAL B 200 N ARG B 185 SHEET 3 AB5 4 SER B 209 LEU B 217 -1 O THR B 211 N LYS B 205 SHEET 4 AB5 4 THR B 228 PRO B 232 -1 O GLU B 229 N LEU B 212 SHEET 1 AB6 3 PHE B 249 GLN B 251 0 SHEET 2 AB6 3 ALA B 280 LEU B 284 -1 O GLN B 281 N GLN B 251 SHEET 3 AB6 3 LYS B 293 VAL B 297 -1 O ILE B 295 N ILE B 282 SHEET 1 AB7 2 VAL B 254 LEU B 256 0 SHEET 2 AB7 2 VAL B 272 PHE B 274 -1 O GLN B 273 N THR B 255 SHEET 1 AB8 4 PHE B 301 GLU B 311 0 SHEET 2 AB8 4 LYS B 314 TYR B 322 -1 O ILE B 320 N HIS B 304 SHEET 3 AB8 4 GLY B 345 ASP B 353 -1 O ILE B 352 N ILE B 315 SHEET 4 AB8 4 THR B 358 VAL B 365 -1 O GLN B 362 N ARG B 349 SHEET 1 AB9 4 CYS B 369 VAL B 373 0 SHEET 2 AB9 4 TYR B 385 ALA B 390 -1 O GLY B 389 N GLU B 370 SHEET 3 AB9 4 ALA B 402 ASP B 407 -1 O LEU B 404 N MET B 388 SHEET 4 AB9 4 GLU B 413 SER B 417 -1 O THR B 414 N LYS B 405 LINK NE2 HIS A 183 FE FE2 A 501 1555 1555 2.16 LINK NE2 HIS A 238 FE FE2 A 501 1555 1555 2.15 LINK NE2 HIS A 304 FE FE2 A 501 1555 1555 2.16 LINK NE2 HIS A 484 FE FE2 A 501 1555 1555 2.16 LINK NE2 HIS B 183 FE FE2 B 501 1555 1555 2.16 LINK NE2 HIS B 238 FE FE2 B 501 1555 1555 2.15 LINK NE2 HIS B 304 FE FE2 B 501 1555 1555 2.16 LINK NE2 HIS B 484 FE FE2 B 501 1555 1555 2.16 CISPEP 1 ALA A 419 PRO A 420 0 -1.44 CISPEP 2 ALA B 419 PRO B 420 0 -1.52 SITE 1 AC1 4 HIS A 183 HIS A 238 HIS A 304 HIS A 484 SITE 1 AC2 4 HIS B 183 HIS B 238 HIS B 304 HIS B 484 CRYST1 126.520 126.520 159.670 90.00 90.00 120.00 P 3 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007904 0.004563 0.000000 0.00000 SCALE2 0.000000 0.009127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006263 0.00000