HEADER RNA 24-JAN-18 6C8E TITLE RNA-IMIDAZOLIUM-BRIDGED INTERMEDIATE COMPLEX, 4H SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, INTERMEDIATE, DINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,J.W.SZOSTAK REVDAT 5 01-MAY-24 6C8E 1 COMPND HETNAM FORMUL REVDAT 4 04-OCT-23 6C8E 1 REMARK REVDAT 3 20-NOV-19 6C8E 1 REMARK REVDAT 2 31-OCT-18 6C8E 1 JRNL REVDAT 1 30-MAY-18 6C8E 0 JRNL AUTH W.ZHANG,T.WALTON,L.LI,J.W.SZOSTAK JRNL TITL CRYSTALLOGRAPHIC OBSERVATION OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29851379 JRNL DOI 10.7554/ELIFE.36422 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 10123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 598 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 780 ; 0.028 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 320 ; 0.058 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1210 ; 3.250 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 792 ; 4.224 ; 3.228 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 138 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 380 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 124 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 778 ; 6.606 ; 5.777 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 779 ; 6.603 ; 5.778 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1210 ; 8.202 ; 8.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1124 ; 9.453 ;54.580 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1125 ; 9.457 ;54.564 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.514 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10695 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V (+/-)-2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 0.040 M SODIUM CACODYLATE TRIHYDRATE PH 7.0, 0.012 REMARK 280 M SPERMINE TETRAHYDROCHLORIDE, 0.080 M SODIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 3 O3' LCG A 4 P 0.077 REMARK 500 LCG A 4 O3' A A 5 P 0.094 REMARK 500 C A 13 O3' G A 14 P -0.079 REMARK 500 LCC B 1 O3' LCC B 2 P 0.091 REMARK 500 LCC B 2 O3' LCC B 3 P 0.074 REMARK 500 LCC B 3 O3' LCG B 4 P 0.089 REMARK 500 LCG B 4 O3' A B 5 P 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = 25.2 DEGREES REMARK 500 LCC A 2 C3' - O3' - P ANGL. DEV. = -9.3 DEGREES REMARK 500 LCC A 3 O3' - P - O5' ANGL. DEV. = 11.6 DEGREES REMARK 500 LCC A 3 C3' - O3' - P ANGL. DEV. = 10.4 DEGREES REMARK 500 LCG A 4 C3' - O3' - P ANGL. DEV. = -18.0 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = 23.4 DEGREES REMARK 500 LCC B 2 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 LCG B 4 O3' - P - O5' ANGL. DEV. = 16.1 DEGREES REMARK 500 LCG B 4 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 A B 5 O3' - P - OP2 ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 203 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EQ1 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EQ1 B 101 DBREF 6C8E A 1 14 PDB 6C8E 6C8E 1 14 DBREF 6C8E B 1 14 PDB 6C8E 6C8E 1 14 SEQRES 1 A 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 14 G SEQRES 1 B 14 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 14 G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET EQ1 A 101 52 HET EQ1 B 101 52 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM EQ1 2-AMINO-1-[(R)-{[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-1,6- HETNAM 2 EQ1 DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYOXOLAN-2- HETNAM 3 EQ1 YL]METHOXY}(HYDROXY)PHOSPHORYL]-3-[(S)-{[(2R,3S,4R, HETNAM 4 EQ1 5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4- HETNAM 5 EQ1 DIHYDROXYOXOLAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]-1H- HETNAM 6 EQ1 IMIDAZOL-3-IUM FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 3 EQ1 2(C23 H30 N13 O14 P2 1+) FORMUL 5 HOH *4(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.65 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.66 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.68 LINK O3' LCG A 4 P A A 5 1555 1555 1.70 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.70 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.68 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.70 LINK O3' LCG B 4 P A B 5 1555 1555 1.71 SITE 1 AC1 4 LCC A 1 LCC A 2 LCC A 3 G B 14 SITE 1 AC2 4 G A 14 LCC B 1 LCC B 2 LCC B 3 CRYST1 49.023 49.023 81.317 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020399 0.011777 0.000000 0.00000 SCALE2 0.000000 0.023554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012298 0.00000 HETATM 1 O5' LCC A 1 31.482 4.925 84.600 1.00 69.43 O HETATM 2 C5' LCC A 1 30.099 5.357 84.679 1.00 63.47 C HETATM 3 C4' LCC A 1 29.328 4.067 84.379 1.00 54.03 C HETATM 4 O4' LCC A 1 29.879 3.298 83.213 1.00 53.67 O HETATM 5 C1' LCC A 1 29.221 2.088 83.204 1.00 48.02 C HETATM 6 N1 LCC A 1 30.395 1.128 83.123 1.00 48.33 N HETATM 7 C6 LCC A 1 31.737 1.555 83.284 1.00 51.35 C HETATM 8 C5 LCC A 1 32.711 0.605 83.142 1.00 56.02 C HETATM 9 C5M LCC A 1 34.057 0.928 83.286 1.00 63.97 C HETATM 10 C4 LCC A 1 32.296 -0.683 82.904 1.00 50.88 C HETATM 11 N4 LCC A 1 33.223 -1.609 82.800 1.00 62.67 N HETATM 12 N3 LCC A 1 31.008 -1.028 82.785 1.00 52.60 N HETATM 13 C2 LCC A 1 30.076 -0.111 82.900 1.00 57.94 C HETATM 14 O2 LCC A 1 28.886 -0.408 82.769 1.00 53.85 O HETATM 15 C3' LCC A 1 29.568 2.926 85.271 1.00 51.99 C HETATM 16 C2' LCC A 1 28.540 2.098 84.566 1.00 48.08 C HETATM 17 O2' LCC A 1 27.256 2.868 84.498 1.00 50.46 O HETATM 18 O3' LCC A 1 29.256 3.262 86.558 1.00 53.54 O HETATM 19 C6' LCC A 1 27.794 4.321 84.430 1.00 57.90 C HETATM 20 O5' LCC A 2 28.077 1.278 87.629 1.00 51.79 O HETATM 21 C5' LCC A 2 26.639 1.267 87.680 1.00 49.15 C HETATM 22 C4' LCC A 2 26.272 -0.100 87.240 1.00 50.03 C HETATM 23 O4' LCC A 2 26.893 -0.508 85.985 1.00 49.18 O HETATM 24 C1' LCC A 2 26.770 -1.914 86.070 1.00 45.43 C HETATM 25 N1 LCC A 2 28.069 -2.576 85.921 1.00 53.29 N HETATM 26 C6 LCC A 2 29.165 -1.789 86.018 1.00 43.82 C HETATM 27 C5 LCC A 2 30.374 -2.416 85.832 1.00 48.84 C HETATM 28 C5M LCC A 2 31.508 -1.661 85.939 1.00 42.76 C HETATM 29 C4 LCC A 2 30.395 -3.781 85.577 1.00 50.15 C HETATM 30 N4 LCC A 2 31.552 -4.344 85.416 1.00 46.22 N HETATM 31 N3 LCC A 2 29.274 -4.502 85.509 1.00 39.59 N HETATM 32 C2 LCC A 2 28.094 -3.896 85.669 1.00 44.70 C HETATM 33 O2 LCC A 2 27.056 -4.603 85.638 1.00 44.66 O HETATM 34 C3' LCC A 2 26.721 -1.147 88.183 1.00 46.88 C HETATM 35 C2' LCC A 2 26.149 -2.208 87.436 1.00 45.60 C HETATM 36 O2' LCC A 2 24.785 -1.839 87.341 1.00 48.76 O HETATM 37 O3' LCC A 2 25.988 -0.945 89.454 1.00 50.53 O HETATM 38 C6' LCC A 2 24.740 -0.285 87.201 1.00 49.32 C HETATM 39 P LCC A 2 28.883 2.676 88.049 1.00 55.19 P HETATM 40 O1P LCC A 2 28.057 3.326 89.265 1.00 73.28 O HETATM 41 O2P LCC A 2 30.302 2.077 88.300 1.00 49.96 O HETATM 42 O5' LCC A 3 26.341 -3.388 90.782 1.00 49.12 O HETATM 43 C5' LCC A 3 24.916 -3.631 90.462 1.00 47.05 C HETATM 44 C4' LCC A 3 24.884 -5.053 89.994 1.00 44.43 C HETATM 45 O4' LCC A 3 25.670 -5.304 88.817 1.00 46.41 O HETATM 46 C1' LCC A 3 25.882 -6.697 88.913 1.00 41.61 C HETATM 47 N1 LCC A 3 27.324 -6.789 88.767 1.00 41.67 N HETATM 48 C6 LCC A 3 27.991 -5.768 88.812 1.00 33.90 C HETATM 49 C5 LCC A 3 29.399 -5.873 88.671 1.00 45.14 C HETATM 50 C5M LCC A 3 30.121 -4.684 88.789 1.00 44.62 C HETATM 51 C4 LCC A 3 29.903 -7.135 88.316 1.00 42.82 C HETATM 52 N4 LCC A 3 31.197 -7.314 88.106 1.00 43.79 N HETATM 53 N3 LCC A 3 29.094 -8.223 88.223 1.00 40.12 N HETATM 54 C2 LCC A 3 27.821 -7.988 88.499 1.00 35.52 C HETATM 55 O2 LCC A 3 27.079 -8.927 88.445 1.00 45.87 O HETATM 56 C3' LCC A 3 25.560 -5.936 90.856 1.00 47.21 C HETATM 57 C2' LCC A 3 25.307 -7.109 90.128 1.00 37.43 C HETATM 58 O2' LCC A 3 23.906 -7.192 89.891 1.00 43.33 O HETATM 59 O3' LCC A 3 24.916 -6.050 92.097 1.00 51.33 O HETATM 60 C6' LCC A 3 23.457 -5.698 89.792 1.00 36.67 C HETATM 61 P LCC A 3 26.722 -1.783 90.684 1.00 53.36 P HETATM 62 O1P LCC A 3 26.176 -1.158 92.077 1.00 60.24 O HETATM 63 O2P LCC A 3 28.334 -1.959 90.796 1.00 47.84 O HETATM 64 P LCG A 4 25.541 -6.430 93.614 1.00 49.09 P HETATM 65 OP1 LCG A 4 24.538 -6.236 94.882 1.00 47.64 O HETATM 66 O5' LCG A 4 26.147 -7.865 93.529 1.00 42.51 O HETATM 67 C5' LCG A 4 25.098 -8.843 93.594 1.00 41.43 C HETATM 68 C3' LCG A 4 26.937 -10.532 94.125 1.00 46.99 C HETATM 69 C6' LCG A 4 24.834 -11.382 93.112 1.00 39.64 C HETATM 70 N9 LCG A 4 28.780 -10.474 91.564 1.00 45.34 N HETATM 71 C8 LCG A 4 29.089 -9.140 91.588 1.00 41.80 C HETATM 72 C4 LCG A 4 29.870 -11.142 91.223 1.00 44.13 C HETATM 73 N7 LCG A 4 30.346 -9.019 91.220 1.00 43.83 N HETATM 74 C5 LCG A 4 30.789 -10.234 90.926 1.00 42.93 C HETATM 75 C6 LCG A 4 31.999 -10.618 90.555 1.00 49.83 C HETATM 76 C2' LCG A 4 27.279 -11.751 93.361 1.00 37.73 C HETATM 77 O6 LCG A 4 32.858 -9.773 90.340 1.00 48.92 O HETATM 78 C4' LCG A 4 25.815 -10.126 93.164 1.00 42.68 C HETATM 79 C1' LCG A 4 27.535 -11.157 91.938 1.00 44.81 C HETATM 80 C2 LCG A 4 31.291 -12.946 90.675 1.00 46.04 C HETATM 81 N1 LCG A 4 32.273 -11.961 90.389 1.00 46.44 N HETATM 82 O4' LCG A 4 26.625 -10.046 91.903 1.00 47.33 O HETATM 83 OP2 LCG A 4 26.901 -5.660 93.623 1.00 38.67 O HETATM 84 N2 LCG A 4 31.534 -14.285 90.549 1.00 42.98 N HETATM 85 N3 LCG A 4 30.096 -12.489 91.072 1.00 40.83 N HETATM 86 O2' LCG A 4 25.938 -12.461 93.517 1.00 47.52 O HETATM 87 O3' LCG A 4 26.323 -10.811 95.402 1.00 48.75 O