data_6C8M # _entry.id 6C8M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6C8M pdb_00006c8m 10.2210/pdb6c8m/pdb WWPDB D_1000232283 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-30 2 'Structure model' 1 1 2018-10-31 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 1 3 2023-10-04 5 'Structure model' 2 0 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Non-polymer description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' struct_conn 9 5 'Structure model' chem_comp 10 5 'Structure model' entity 11 5 'Structure model' pdbx_entity_nonpoly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 11 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 5 'Structure model' '_chem_comp.formula' 27 5 'Structure model' '_chem_comp.name' 28 5 'Structure model' '_entity.pdbx_description' 29 5 'Structure model' '_pdbx_entity_nonpoly.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C8M _pdbx_database_status.recvd_initial_deposition_date 2018-01-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Szostak, J.W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystallographic observation of nonenzymatic RNA primer extension.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.36422 _citation.pdbx_database_id_PubMed 29851379 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 0000-0003-4811-4384 primary 'Walton, T.' 2 0000-0001-6812-1579 primary 'Li, L.' 3 0000-0003-4766-5782 primary 'Szostak, J.W.' 4 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') ; 4858.010 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') ; 4512.804 1 ? ? ? ? 3 non-polymer syn "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine" 428.297 1 ? ? ? ? 4 non-polymer syn ;2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium ; 774.511 2 ? ? ? ? 5 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCGG' NNNGACUUAAGUCGG A ? 2 polyribonucleotide no yes '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCG' NNNGACUUAAGUCG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine" EQ4 4 ;2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium ; EQ1 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n 1 15 G n 2 1 LCC n 2 2 LCC n 2 3 LCC n 2 4 LCG n 2 5 A n 2 6 C n 2 7 U n 2 8 U n 2 9 A n 2 10 A n 2 11 G n 2 12 U n 2 13 C n 2 14 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 15 'synthetic construct' ? 32630 ? 2 1 sample 1 14 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 EQ1 non-polymer . ;2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium ; ? 'C23 H30 N13 O14 P2 1' 774.511 EQ4 'RNA linking' n "5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine" ? 'C13 H17 N8 O7 P' 428.297 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n B 2 1 LCC 1 1 1 LCC LCC B . n B 2 2 LCC 2 2 2 LCC LCC B . n B 2 3 LCC 3 3 3 LCC LCC B . n B 2 4 LCG 4 4 4 LCG LCG B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 U 8 8 8 U U B . n B 2 9 A 9 9 9 A A B . n B 2 10 A 10 10 10 A A B . n B 2 11 G 11 11 11 G G B . n B 2 12 U 12 12 12 U U B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EQ4 1 101 16 EQ4 NG A . D 4 EQ1 1 102 1 EQ1 GIM A . E 4 EQ1 1 103 2 EQ1 GIM A . F 5 HOH 1 201 6 HOH HOH A . F 5 HOH 2 202 3 HOH HOH A . F 5 HOH 3 203 5 HOH HOH A . F 5 HOH 4 204 1 HOH HOH A . G 5 HOH 1 101 4 HOH HOH B . G 5 HOH 2 102 2 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6C8M _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.874 _cell.length_a_esd ? _cell.length_b 47.874 _cell.length_b_esd ? _cell.length_c 82.731 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C8M _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040 M Sodium cacodylate trihydrate pH 7.0, 0.012 M Spermine tetrahydrochloride, 0.080 M Sodium chloride, 0.020 M Magnesium chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6C8M _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4326 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.7 _reflns.pdbx_Rmerge_I_obs 0.104 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.64 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.883 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.128 _reflns.pdbx_Rpim_I_all 0.072 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.977 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.22 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 428 _reflns_shell.percent_possible_all 96.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.732 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.503 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.905 _reflns_shell.pdbx_Rpim_I_all 0.523 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.914 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.03 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.11 _refine.B_iso_max ? _refine.B_iso_mean 63.200 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C8M _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4006 _refine.ls_number_reflns_R_free 219 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.75 _refine.ls_percent_reflns_R_free 5.2 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.24164 _refine.ls_R_factor_R_free 0.27196 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.23995 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5dhc _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.536 _refine.pdbx_overall_ESU_R_Free 0.298 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 14.140 _refine.overall_SU_ML 0.273 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 621 _refine_hist.pdbx_number_atoms_ligand 133 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 760 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.021 0.017 838 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.051 0.024 372 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.773 2.018 1300 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.931 3.279 889 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.200 0.200 147 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.021 445 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.022 166 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 6.411 6.775 835 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 6.407 6.774 836 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 9.417 10.155 1301 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 11.240 67.371 1243 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 11.236 67.367 1244 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.404 _refine_ls_shell.d_res_low 2.467 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 8 _refine_ls_shell.number_reflns_R_work 297 _refine_ls_shell.percent_reflns_obs 93.85 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.491 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.458 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6C8M _struct.title 'RNA-activated 2-AIpG monomer, 1.5h soaking' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C8M _struct_keywords.text 'RNA, activated monomer' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6C8M 6C8M ? 1 ? 1 2 PDB 6C8M 6C8M ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C8M A 1 ? 15 ? 6C8M 1 ? 15 ? 1 15 2 2 6C8M B 1 ? 14 ? 6C8M 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2730 ? 1 MORE 12 ? 1 'SSA (A^2)' 5880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.679 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.662 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.702 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.653 ? ? covale5 covale one ? A G 15 P B ? ? 1_555 D EQ1 . O2A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.570 ? ? covale6 covale none ? A G 15 "O5'" B ? ? 1_555 D EQ1 . PA A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.567 ? ? covale7 covale none ? A G 15 "C5'" B ? ? 1_555 D EQ1 . PA A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.720 ? ? covale8 covale none ? A G 15 "C5'" B ? ? 1_555 D EQ1 . C5D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.263 ? ? covale9 covale none ? A G 15 "C5'" B ? ? 1_555 D EQ1 . O5D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.135 ? ? covale10 covale none ? A G 15 "C4'" B ? ? 1_555 D EQ1 . C5D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.084 ? ? covale11 covale none ? A G 15 "C4'" B ? ? 1_555 D EQ1 . C4D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale12 covale none ? A G 15 "O4'" B ? ? 1_555 D EQ1 . C4D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale13 covale none ? A G 15 "C3'" B ? ? 1_555 D EQ1 . C3D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.478 ? ? covale14 covale none ? A G 15 "C2'" B ? ? 1_555 D EQ1 . C3D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.159 ? ? covale15 covale none ? A G 15 "O2'" B ? ? 1_555 D EQ1 . C2D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale16 covale none ? A G 15 "O2'" B ? ? 1_555 D EQ1 . C3D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.266 ? ? covale17 covale none ? A G 15 "C1'" B ? ? 1_555 D EQ1 . C2D A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.170 ? ? covale18 covale none ? A G 15 "C1'" B ? ? 1_555 D EQ1 . N9A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.546 ? ? covale19 covale none ? A G 15 N9 B ? ? 1_555 D EQ1 . C4A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.251 ? ? covale20 covale none ? A G 15 C8 B ? ? 1_555 D EQ1 . N7A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.247 ? ? covale21 covale none ? A G 15 C8 B ? ? 1_555 D EQ1 . N9A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale22 covale none ? A G 15 C5 B ? ? 1_555 D EQ1 . C6A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.181 ? ? covale23 covale none ? A G 15 C5 B ? ? 1_555 D EQ1 . C4A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale24 covale none ? A G 15 C6 B ? ? 1_555 D EQ1 . O6A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.502 ? ? covale25 covale none ? A G 15 O6 B ? ? 1_555 D EQ1 . C6A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.272 ? ? covale26 covale none ? A G 15 C2 B ? ? 1_555 D EQ1 . N3A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale27 covale none ? A G 15 N3 B ? ? 1_555 D EQ1 . C2A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale28 covale none ? A G 15 C4 B ? ? 1_555 D EQ1 . C5A A ? A G 15 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale29 covale none ? C EQ4 . O1 B ? ? 1_555 D EQ1 . C1C A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale30 covale none ? C EQ4 . O1 B ? ? 1_555 D EQ1 . N3C A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.381 ? ? covale31 covale none ? C EQ4 . C1 B ? ? 1_555 D EQ1 . C5E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.057 ? ? covale32 covale none ? C EQ4 . C1 B ? ? 1_555 D EQ1 . O5E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.523 ? ? covale33 covale none ? C EQ4 . O3 B ? ? 1_555 D EQ1 . PG A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.678 ? ? covale34 covale none ? C EQ4 . O3 B ? ? 1_555 D EQ1 . N2C A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale35 covale none ? C EQ4 . C3 B ? ? 1_555 D EQ1 . C3E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.194 ? ? covale36 covale none ? C EQ4 . C3 B ? ? 1_555 D EQ1 . C4E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale37 covale none ? C EQ4 . C4 B ? ? 1_555 D EQ1 . C2E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale38 covale none ? C EQ4 . C4 B ? ? 1_555 D EQ1 . O3E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale39 covale none ? C EQ4 . C5 B ? ? 1_555 D EQ1 . C2E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.185 ? ? covale40 covale none ? C EQ4 . C5 B ? ? 1_555 D EQ1 . C3E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale41 covale none ? C EQ4 . C5 B ? ? 1_555 D EQ1 . C4E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale42 covale none ? C EQ4 . C5 B ? ? 1_555 D EQ1 . O4E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.262 ? ? covale43 covale none ? C EQ4 . C5 B ? ? 1_555 D EQ1 . C1E A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.083 ? ? covale44 covale none ? C EQ4 . N1 B ? ? 1_555 D EQ1 . N3B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.523 ? ? covale45 covale none ? C EQ4 . C6 B ? ? 1_555 D EQ1 . N2B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.468 ? ? covale46 covale none ? C EQ4 . N2 B ? ? 1_555 D EQ1 . C2B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.528 ? ? covale47 covale none ? C EQ4 . C7 B ? ? 1_555 D EQ1 . N3B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.549 ? ? covale48 covale none ? C EQ4 . C8 B ? ? 1_555 D EQ1 . N7B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.503 ? ? covale49 covale none ? C EQ4 . C8 B ? ? 1_555 D EQ1 . C8B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale50 covale none ? C EQ4 . C8 B ? ? 1_555 D EQ1 . N9B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.245 ? ? covale51 covale none ? C EQ4 . C9 B ? ? 1_555 D EQ1 . C4B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale52 covale none ? C EQ4 . O7 B ? ? 1_555 D EQ1 . C5B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.263 ? ? covale53 covale none ? C EQ4 . N4 B ? ? 1_555 D EQ1 . N9B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale54 covale none ? C EQ4 . C10 B ? ? 1_555 D EQ1 . N9B A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.241 ? ? covale55 covale none ? C EQ4 . C11 B ? ? 1_555 D EQ1 . O2G A ? A EQ4 101 A EQ1 102 1_555 ? ? ? ? ? ? ? 1.134 ? ? covale56 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.692 ? ? covale57 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale58 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.686 ? ? covale59 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.697 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog18 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EQ1 103 ? 6 'binding site for residue EQ1 A 103' AC2 Software A LCC 1 ? 5 'binding site for residues LCC A 1 and LCC A 2' AC3 Software A LCC 2 ? 7 'binding site for residues LCC A 2 and LCC A 3' AC4 Software A LCC 3 ? 8 'binding site for residues LCC A 3 and LCG A 4' AC5 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AC6 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AC7 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AC8 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AC9 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD1 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD2 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD3 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD4 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD5 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD6 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD7 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD8 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AD9 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE1 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE2 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE3 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE4 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE5 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE6 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE7 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE8 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AE9 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AF1 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AF2 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AF3 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AF4 Software A EQ4 101 ? 9 'binding site for residues EQ4 A 101 and EQ1 A 102' AF5 Software B LCC 1 ? 8 'binding site for residues LCC B 1 and LCC B 2' AF6 Software B LCC 2 ? 9 'binding site for residues LCC B 2 and LCC B 3' AF7 Software B LCC 3 ? 9 'binding site for residues LCC B 3 and LCG B 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LCC A 1 ? LCC A 1 . ? 1_555 ? 2 AC1 6 LCC A 1 ? LCC A 1 . ? 6_767 ? 3 AC1 6 LCC A 2 ? LCC A 2 . ? 1_555 ? 4 AC1 6 LCC A 3 ? LCC A 3 . ? 1_555 ? 5 AC1 6 G B 14 ? G B 14 . ? 1_555 ? 6 AC1 6 G B 14 ? G B 14 . ? 3_775 ? 7 AC2 5 LCC A 3 ? LCC A 3 . ? 1_555 ? 8 AC2 5 EQ1 E . ? EQ1 A 103 . ? 1_555 ? 9 AC2 5 EQ1 E . ? EQ1 A 103 . ? 6_767 ? 10 AC2 5 C B 13 ? C B 13 . ? 3_775 ? 11 AC2 5 G B 14 ? G B 14 . ? 3_775 ? 12 AC3 7 LCC A 1 ? LCC A 1 . ? 1_555 ? 13 AC3 7 LCG A 4 ? LCG A 4 . ? 3_775 ? 14 AC3 7 LCG A 4 ? LCG A 4 . ? 1_555 ? 15 AC3 7 EQ1 E . ? EQ1 A 103 . ? 1_555 ? 16 AC3 7 C B 13 ? C B 13 . ? 3_775 ? 17 AC3 7 G B 14 ? G B 14 . ? 1_555 ? 18 AC3 7 G B 14 ? G B 14 . ? 3_775 ? 19 AC4 8 LCC A 2 ? LCC A 2 . ? 1_555 ? 20 AC4 8 A A 5 ? A A 5 . ? 3_775 ? 21 AC4 8 A A 5 ? A A 5 . ? 1_555 ? 22 AC4 8 EQ1 E . ? EQ1 A 103 . ? 1_555 ? 23 AC4 8 C B 13 ? C B 13 . ? 3_775 ? 24 AC4 8 C B 13 ? C B 13 . ? 1_555 ? 25 AC4 8 G B 14 ? G B 14 . ? 1_555 ? 26 AC4 8 G B 14 ? G B 14 . ? 3_775 ? 27 AC5 9 G A 14 ? G A 14 . ? 2_755 ? 28 AC5 9 G A 14 ? G A 14 . ? 1_555 ? 29 AC5 9 G A 15 ? G A 15 . ? 2_755 ? 30 AC5 9 G A 15 ? G A 15 . ? 1_555 ? 31 AC5 9 G A 15 ? G A 15 . ? 3_775 ? 32 AC5 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 33 AC5 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 34 AC5 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 35 AC5 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 36 AC6 9 G A 14 ? G A 14 . ? 2_755 ? 37 AC6 9 G A 14 ? G A 14 . ? 1_555 ? 38 AC6 9 G A 15 ? G A 15 . ? 2_755 ? 39 AC6 9 G A 15 ? G A 15 . ? 1_555 ? 40 AC6 9 G A 15 ? G A 15 . ? 3_775 ? 41 AC6 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 42 AC6 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 43 AC6 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 44 AC6 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 45 AC7 9 G A 14 ? G A 14 . ? 2_755 ? 46 AC7 9 G A 14 ? G A 14 . ? 1_555 ? 47 AC7 9 G A 15 ? G A 15 . ? 2_755 ? 48 AC7 9 G A 15 ? G A 15 . ? 1_555 ? 49 AC7 9 G A 15 ? G A 15 . ? 3_775 ? 50 AC7 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 51 AC7 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 52 AC7 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 53 AC7 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 54 AC8 9 G A 14 ? G A 14 . ? 2_755 ? 55 AC8 9 G A 14 ? G A 14 . ? 1_555 ? 56 AC8 9 G A 15 ? G A 15 . ? 2_755 ? 57 AC8 9 G A 15 ? G A 15 . ? 1_555 ? 58 AC8 9 G A 15 ? G A 15 . ? 3_775 ? 59 AC8 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 60 AC8 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 61 AC8 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 62 AC8 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 63 AC9 9 G A 14 ? G A 14 . ? 2_755 ? 64 AC9 9 G A 14 ? G A 14 . ? 1_555 ? 65 AC9 9 G A 15 ? G A 15 . ? 2_755 ? 66 AC9 9 G A 15 ? G A 15 . ? 1_555 ? 67 AC9 9 G A 15 ? G A 15 . ? 3_775 ? 68 AC9 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 69 AC9 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 70 AC9 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 71 AC9 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 72 AD1 9 G A 14 ? G A 14 . ? 2_755 ? 73 AD1 9 G A 14 ? G A 14 . ? 1_555 ? 74 AD1 9 G A 15 ? G A 15 . ? 2_755 ? 75 AD1 9 G A 15 ? G A 15 . ? 1_555 ? 76 AD1 9 G A 15 ? G A 15 . ? 3_775 ? 77 AD1 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 78 AD1 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 79 AD1 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 80 AD1 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 81 AD2 9 G A 14 ? G A 14 . ? 2_755 ? 82 AD2 9 G A 14 ? G A 14 . ? 1_555 ? 83 AD2 9 G A 15 ? G A 15 . ? 2_755 ? 84 AD2 9 G A 15 ? G A 15 . ? 1_555 ? 85 AD2 9 G A 15 ? G A 15 . ? 3_775 ? 86 AD2 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 87 AD2 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 88 AD2 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 89 AD2 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 90 AD3 9 G A 14 ? G A 14 . ? 2_755 ? 91 AD3 9 G A 14 ? G A 14 . ? 1_555 ? 92 AD3 9 G A 15 ? G A 15 . ? 2_755 ? 93 AD3 9 G A 15 ? G A 15 . ? 1_555 ? 94 AD3 9 G A 15 ? G A 15 . ? 3_775 ? 95 AD3 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 96 AD3 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 97 AD3 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 98 AD3 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 99 AD4 9 G A 14 ? G A 14 . ? 2_755 ? 100 AD4 9 G A 14 ? G A 14 . ? 1_555 ? 101 AD4 9 G A 15 ? G A 15 . ? 2_755 ? 102 AD4 9 G A 15 ? G A 15 . ? 1_555 ? 103 AD4 9 G A 15 ? G A 15 . ? 3_775 ? 104 AD4 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 105 AD4 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 106 AD4 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 107 AD4 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 108 AD5 9 G A 14 ? G A 14 . ? 2_755 ? 109 AD5 9 G A 14 ? G A 14 . ? 1_555 ? 110 AD5 9 G A 15 ? G A 15 . ? 2_755 ? 111 AD5 9 G A 15 ? G A 15 . ? 1_555 ? 112 AD5 9 G A 15 ? G A 15 . ? 3_775 ? 113 AD5 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 114 AD5 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 115 AD5 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 116 AD5 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 117 AD6 9 G A 14 ? G A 14 . ? 2_755 ? 118 AD6 9 G A 14 ? G A 14 . ? 1_555 ? 119 AD6 9 G A 15 ? G A 15 . ? 2_755 ? 120 AD6 9 G A 15 ? G A 15 . ? 1_555 ? 121 AD6 9 G A 15 ? G A 15 . ? 3_775 ? 122 AD6 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 123 AD6 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 124 AD6 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 125 AD6 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 126 AD7 9 G A 14 ? G A 14 . ? 2_755 ? 127 AD7 9 G A 14 ? G A 14 . ? 1_555 ? 128 AD7 9 G A 15 ? G A 15 . ? 2_755 ? 129 AD7 9 G A 15 ? G A 15 . ? 1_555 ? 130 AD7 9 G A 15 ? G A 15 . ? 3_775 ? 131 AD7 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 132 AD7 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 133 AD7 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 134 AD7 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 135 AD8 9 G A 14 ? G A 14 . ? 2_755 ? 136 AD8 9 G A 14 ? G A 14 . ? 1_555 ? 137 AD8 9 G A 15 ? G A 15 . ? 2_755 ? 138 AD8 9 G A 15 ? G A 15 . ? 1_555 ? 139 AD8 9 G A 15 ? G A 15 . ? 3_775 ? 140 AD8 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 141 AD8 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 142 AD8 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 143 AD8 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 144 AD9 9 G A 14 ? G A 14 . ? 2_755 ? 145 AD9 9 G A 14 ? G A 14 . ? 1_555 ? 146 AD9 9 G A 15 ? G A 15 . ? 2_755 ? 147 AD9 9 G A 15 ? G A 15 . ? 1_555 ? 148 AD9 9 G A 15 ? G A 15 . ? 3_775 ? 149 AD9 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 150 AD9 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 151 AD9 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 152 AD9 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 153 AE1 9 G A 14 ? G A 14 . ? 2_755 ? 154 AE1 9 G A 14 ? G A 14 . ? 1_555 ? 155 AE1 9 G A 15 ? G A 15 . ? 2_755 ? 156 AE1 9 G A 15 ? G A 15 . ? 1_555 ? 157 AE1 9 G A 15 ? G A 15 . ? 3_775 ? 158 AE1 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 159 AE1 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 160 AE1 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 161 AE1 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 162 AE2 9 G A 14 ? G A 14 . ? 2_755 ? 163 AE2 9 G A 14 ? G A 14 . ? 1_555 ? 164 AE2 9 G A 15 ? G A 15 . ? 2_755 ? 165 AE2 9 G A 15 ? G A 15 . ? 1_555 ? 166 AE2 9 G A 15 ? G A 15 . ? 3_775 ? 167 AE2 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 168 AE2 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 169 AE2 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 170 AE2 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 171 AE3 9 G A 14 ? G A 14 . ? 2_755 ? 172 AE3 9 G A 14 ? G A 14 . ? 1_555 ? 173 AE3 9 G A 15 ? G A 15 . ? 2_755 ? 174 AE3 9 G A 15 ? G A 15 . ? 1_555 ? 175 AE3 9 G A 15 ? G A 15 . ? 3_775 ? 176 AE3 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 177 AE3 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 178 AE3 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 179 AE3 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 180 AE4 9 G A 14 ? G A 14 . ? 2_755 ? 181 AE4 9 G A 14 ? G A 14 . ? 1_555 ? 182 AE4 9 G A 15 ? G A 15 . ? 2_755 ? 183 AE4 9 G A 15 ? G A 15 . ? 1_555 ? 184 AE4 9 G A 15 ? G A 15 . ? 3_775 ? 185 AE4 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 186 AE4 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 187 AE4 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 188 AE4 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 189 AE5 9 G A 14 ? G A 14 . ? 2_755 ? 190 AE5 9 G A 14 ? G A 14 . ? 1_555 ? 191 AE5 9 G A 15 ? G A 15 . ? 2_755 ? 192 AE5 9 G A 15 ? G A 15 . ? 1_555 ? 193 AE5 9 G A 15 ? G A 15 . ? 3_775 ? 194 AE5 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 195 AE5 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 196 AE5 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 197 AE5 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 198 AE6 9 G A 14 ? G A 14 . ? 2_755 ? 199 AE6 9 G A 14 ? G A 14 . ? 1_555 ? 200 AE6 9 G A 15 ? G A 15 . ? 2_755 ? 201 AE6 9 G A 15 ? G A 15 . ? 1_555 ? 202 AE6 9 G A 15 ? G A 15 . ? 3_775 ? 203 AE6 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 204 AE6 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 205 AE6 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 206 AE6 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 207 AE7 9 G A 14 ? G A 14 . ? 2_755 ? 208 AE7 9 G A 14 ? G A 14 . ? 1_555 ? 209 AE7 9 G A 15 ? G A 15 . ? 2_755 ? 210 AE7 9 G A 15 ? G A 15 . ? 1_555 ? 211 AE7 9 G A 15 ? G A 15 . ? 3_775 ? 212 AE7 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 213 AE7 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 214 AE7 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 215 AE7 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 216 AE8 9 G A 14 ? G A 14 . ? 2_755 ? 217 AE8 9 G A 14 ? G A 14 . ? 1_555 ? 218 AE8 9 G A 15 ? G A 15 . ? 2_755 ? 219 AE8 9 G A 15 ? G A 15 . ? 1_555 ? 220 AE8 9 G A 15 ? G A 15 . ? 3_775 ? 221 AE8 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 222 AE8 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 223 AE8 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 224 AE8 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 225 AE9 9 G A 14 ? G A 14 . ? 2_755 ? 226 AE9 9 G A 14 ? G A 14 . ? 1_555 ? 227 AE9 9 G A 15 ? G A 15 . ? 2_755 ? 228 AE9 9 G A 15 ? G A 15 . ? 1_555 ? 229 AE9 9 G A 15 ? G A 15 . ? 3_775 ? 230 AE9 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 231 AE9 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 232 AE9 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 233 AE9 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 234 AF1 9 G A 14 ? G A 14 . ? 2_755 ? 235 AF1 9 G A 14 ? G A 14 . ? 1_555 ? 236 AF1 9 G A 15 ? G A 15 . ? 2_755 ? 237 AF1 9 G A 15 ? G A 15 . ? 1_555 ? 238 AF1 9 G A 15 ? G A 15 . ? 3_775 ? 239 AF1 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 240 AF1 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 241 AF1 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 242 AF1 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 243 AF2 9 G A 14 ? G A 14 . ? 2_755 ? 244 AF2 9 G A 14 ? G A 14 . ? 1_555 ? 245 AF2 9 G A 15 ? G A 15 . ? 2_755 ? 246 AF2 9 G A 15 ? G A 15 . ? 1_555 ? 247 AF2 9 G A 15 ? G A 15 . ? 3_775 ? 248 AF2 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 249 AF2 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 250 AF2 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 251 AF2 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 252 AF3 9 G A 14 ? G A 14 . ? 2_755 ? 253 AF3 9 G A 14 ? G A 14 . ? 1_555 ? 254 AF3 9 G A 15 ? G A 15 . ? 2_755 ? 255 AF3 9 G A 15 ? G A 15 . ? 1_555 ? 256 AF3 9 G A 15 ? G A 15 . ? 3_775 ? 257 AF3 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 258 AF3 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 259 AF3 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 260 AF3 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 261 AF4 9 G A 14 ? G A 14 . ? 2_755 ? 262 AF4 9 G A 14 ? G A 14 . ? 1_555 ? 263 AF4 9 G A 15 ? G A 15 . ? 2_755 ? 264 AF4 9 G A 15 ? G A 15 . ? 1_555 ? 265 AF4 9 G A 15 ? G A 15 . ? 3_775 ? 266 AF4 9 LCC B 1 ? LCC B 1 . ? 4_646 ? 267 AF4 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 268 AF4 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 269 AF4 9 LCC B 3 ? LCC B 3 . ? 1_555 ? 270 AF5 8 C A 13 ? C A 13 . ? 2_755 ? 271 AF5 8 G A 14 ? G A 14 . ? 2_755 ? 272 AF5 8 G A 15 ? G A 15 . ? 1_555 ? 273 AF5 8 EQ4 C . ? EQ4 A 101 . ? 1_555 ? 274 AF5 8 EQ4 C . ? EQ4 A 101 . ? 4_646 ? 275 AF5 8 EQ1 D . ? EQ1 A 102 . ? 1_555 ? 276 AF5 8 EQ1 D . ? EQ1 A 102 . ? 4_646 ? 277 AF5 8 LCC B 3 ? LCC B 3 . ? 1_555 ? 278 AF6 9 C A 13 ? C A 13 . ? 2_755 ? 279 AF6 9 G A 14 ? G A 14 . ? 2_755 ? 280 AF6 9 G A 14 ? G A 14 . ? 1_555 ? 281 AF6 9 G A 15 ? G A 15 . ? 1_555 ? 282 AF6 9 EQ4 C . ? EQ4 A 101 . ? 1_555 ? 283 AF6 9 EQ1 D . ? EQ1 A 102 . ? 1_555 ? 284 AF6 9 LCC B 1 ? LCC B 1 . ? 1_555 ? 285 AF6 9 LCG B 4 ? LCG B 4 . ? 2_755 ? 286 AF6 9 LCG B 4 ? LCG B 4 . ? 1_555 ? 287 AF7 9 C A 13 ? C A 13 . ? 2_755 ? 288 AF7 9 C A 13 ? C A 13 . ? 1_555 ? 289 AF7 9 G A 14 ? G A 14 . ? 2_755 ? 290 AF7 9 G A 14 ? G A 14 . ? 1_555 ? 291 AF7 9 G A 15 ? G A 15 . ? 1_555 ? 292 AF7 9 EQ1 D . ? EQ1 A 102 . ? 1_555 ? 293 AF7 9 LCC B 2 ? LCC B 2 . ? 1_555 ? 294 AF7 9 A B 5 ? A B 5 . ? 1_555 ? 295 AF7 9 A B 5 ? A B 5 . ? 2_755 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? 1.679 1.607 0.072 0.012 Y 2 1 "O3'" A LCC 3 ? ? P A LCG 4 ? ? 1.702 1.607 0.095 0.012 Y 3 1 "O3'" B LCC 1 ? ? P B LCC 2 ? ? 1.692 1.607 0.085 0.012 Y 4 1 "O3'" B LCC 3 ? ? P B LCG 4 ? ? 1.686 1.607 0.079 0.012 Y 5 1 "O3'" B LCG 4 ? ? P B A 5 ? ? 1.697 1.607 0.090 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A LCC 1 ? ? "O3'" A LCC 1 ? ? P A LCC 2 ? ? 141.46 119.70 21.76 1.20 Y 2 1 "O3'" A LCC 1 ? ? P A LCC 2 ? ? "O5'" A LCC 2 ? ? 143.22 104.00 39.22 1.90 Y 3 1 "O3'" A LCC 2 ? ? P A LCC 3 ? ? "O5'" A LCC 3 ? ? 79.40 104.00 -24.60 1.90 Y 4 1 "C3'" A LCC 3 ? ? "O3'" A LCC 3 ? ? P A LCG 4 ? ? 108.84 119.70 -10.86 1.20 Y 5 1 "O3'" A LCC 3 ? ? P A LCG 4 ? ? "O5'" A LCG 4 ? ? 116.17 104.00 12.17 1.90 Y 6 1 "O3'" A LCC 3 ? ? P A LCG 4 ? ? OP2 A LCG 4 ? ? 121.51 110.50 11.01 1.10 Y 7 1 "O3'" B LCC 1 ? ? P B LCC 2 ? ? "O5'" B LCC 2 ? ? 129.72 104.00 25.72 1.90 Y 8 1 "C3'" B LCC 2 ? ? "O3'" B LCC 2 ? ? P B LCC 3 ? ? 134.40 119.70 14.70 1.20 Y 9 1 "O3'" B LCC 2 ? ? P B LCC 3 ? ? "O5'" B LCC 3 ? ? 87.91 104.00 -16.09 1.90 Y 10 1 "O3'" B LCC 3 ? ? P B LCG 4 ? ? "O5'" B LCG 4 ? ? 119.90 104.00 15.90 1.90 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 EQ1 PA P N N 73 EQ1 PG P N N 74 EQ1 C1C C Y N 75 EQ1 C1D C N R 76 EQ1 C1E C N R 77 EQ1 N1A N N N 78 EQ1 N1B N N N 79 EQ1 N1C N Y N 80 EQ1 O1A O N N 81 EQ1 O1G O N N 82 EQ1 C2A C N N 83 EQ1 C2B C N N 84 EQ1 C2C C Y N 85 EQ1 C2D C N R 86 EQ1 C2E C N R 87 EQ1 N2A N N N 88 EQ1 N2B N N N 89 EQ1 N2C N Y N 90 EQ1 O2A O N N 91 EQ1 O2D O N N 92 EQ1 O2E O N N 93 EQ1 O2G O N N 94 EQ1 C3C C Y N 95 EQ1 C3D C N S 96 EQ1 C3E C N S 97 EQ1 N3A N N N 98 EQ1 N3B N N N 99 EQ1 N3C N N N 100 EQ1 O3D O N N 101 EQ1 O3E O N N 102 EQ1 C4A C Y N 103 EQ1 C4B C Y N 104 EQ1 C4D C N R 105 EQ1 C4E C N R 106 EQ1 O4D O N N 107 EQ1 O4E O N N 108 EQ1 C5A C Y N 109 EQ1 C5B C Y N 110 EQ1 C5D C N N 111 EQ1 C5E C N N 112 EQ1 O5D O N N 113 EQ1 O5E O N N 114 EQ1 C6A C N N 115 EQ1 C6B C N N 116 EQ1 O6A O N N 117 EQ1 O6B O N N 118 EQ1 N7A N Y N 119 EQ1 N7B N Y N 120 EQ1 C8A C Y N 121 EQ1 C8B C Y N 122 EQ1 N9A N Y N 123 EQ1 N9B N Y N 124 EQ1 H1 H N N 125 EQ1 H2 H N N 126 EQ1 H3 H N N 127 EQ1 H4 H N N 128 EQ1 H5 H N N 129 EQ1 H6 H N N 130 EQ1 H7 H N N 131 EQ1 H8 H N N 132 EQ1 H9 H N N 133 EQ1 H10 H N N 134 EQ1 H11 H N N 135 EQ1 H12 H N N 136 EQ1 H13 H N N 137 EQ1 H14 H N N 138 EQ1 H15 H N N 139 EQ1 H16 H N N 140 EQ1 H17 H N N 141 EQ1 H18 H N N 142 EQ1 H19 H N N 143 EQ1 H20 H N N 144 EQ1 H21 H N N 145 EQ1 H22 H N N 146 EQ1 H23 H N N 147 EQ1 H24 H N N 148 EQ1 H25 H N N 149 EQ1 H26 H N N 150 EQ1 H27 H N N 151 EQ1 H28 H N N 152 EQ1 H29 H N N 153 EQ1 H30 H N N 154 EQ4 P1 P N N 155 EQ4 O1 O N N 156 EQ4 O2 O N N 157 EQ4 C1 C N N 158 EQ4 O3 O N N 159 EQ4 C2 C N R 160 EQ4 O4 O N N 161 EQ4 C3 C N S 162 EQ4 O5 O N N 163 EQ4 C4 C N R 164 EQ4 O6 O N N 165 EQ4 C5 C N R 166 EQ4 N1 N N N 167 EQ4 C6 C N N 168 EQ4 N2 N N N 169 EQ4 N3 N N N 170 EQ4 C7 C Y N 171 EQ4 C8 C Y N 172 EQ4 C9 C N N 173 EQ4 O7 O N N 174 EQ4 N4 N Y N 175 EQ4 C10 C Y N 176 EQ4 N5 N Y N 177 EQ4 N6 N Y N 178 EQ4 C11 C Y N 179 EQ4 C12 C Y N 180 EQ4 N7 N Y N 181 EQ4 C13 C Y N 182 EQ4 N8 N N N 183 EQ4 H1 H N N 184 EQ4 H2 H N N 185 EQ4 H3 H N N 186 EQ4 H4 H N N 187 EQ4 H5 H N N 188 EQ4 H6 H N N 189 EQ4 H7 H N N 190 EQ4 H8 H N N 191 EQ4 H9 H N N 192 EQ4 H10 H N N 193 EQ4 H11 H N N 194 EQ4 H12 H N N 195 EQ4 H13 H N N 196 EQ4 H14 H N N 197 EQ4 H15 H N N 198 EQ4 H16 H N N 199 EQ4 H17 H N N 200 G OP3 O N N 201 G P P N N 202 G OP1 O N N 203 G OP2 O N N 204 G "O5'" O N N 205 G "C5'" C N N 206 G "C4'" C N R 207 G "O4'" O N N 208 G "C3'" C N S 209 G "O3'" O N N 210 G "C2'" C N R 211 G "O2'" O N N 212 G "C1'" C N R 213 G N9 N Y N 214 G C8 C Y N 215 G N7 N Y N 216 G C5 C Y N 217 G C6 C N N 218 G O6 O N N 219 G N1 N N N 220 G C2 C N N 221 G N2 N N N 222 G N3 N N N 223 G C4 C Y N 224 G HOP3 H N N 225 G HOP2 H N N 226 G "H5'" H N N 227 G "H5''" H N N 228 G "H4'" H N N 229 G "H3'" H N N 230 G "HO3'" H N N 231 G "H2'" H N N 232 G "HO2'" H N N 233 G "H1'" H N N 234 G H8 H N N 235 G H1 H N N 236 G H21 H N N 237 G H22 H N N 238 HOH O O N N 239 HOH H1 H N N 240 HOH H2 H N N 241 LCC "O5'" O N N 242 LCC "C5'" C N N 243 LCC "C4'" C N R 244 LCC "O4'" O N N 245 LCC "C1'" C N R 246 LCC N1 N N N 247 LCC C6 C N N 248 LCC C5 C N N 249 LCC C5M C N N 250 LCC C4 C N N 251 LCC N4 N N N 252 LCC N3 N N N 253 LCC C2 C N N 254 LCC O2 O N N 255 LCC "C3'" C N S 256 LCC "C2'" C N R 257 LCC "O2'" O N N 258 LCC "O3'" O N N 259 LCC "C6'" C N N 260 LCC P P N N 261 LCC O1P O N N 262 LCC O2P O N N 263 LCC OXT O N N 264 LCC "H5'1" H N N 265 LCC "H5'2" H N N 266 LCC "H1'" H N N 267 LCC H6 H N N 268 LCC H5M1 H N N 269 LCC H5M2 H N N 270 LCC H5M3 H N N 271 LCC H41 H N N 272 LCC H42 H N N 273 LCC "H3'" H N N 274 LCC "H2'1" H N N 275 LCC H3T H N N 276 LCC "H6'1" H N N 277 LCC "H6'2" H N N 278 LCC H1P H N N 279 LCC HXT H N N 280 LCG P P N N 281 LCG OP1 O N N 282 LCG "O5'" O N N 283 LCG "C5'" C N N 284 LCG "C3'" C N S 285 LCG "C6'" C N N 286 LCG N9 N Y N 287 LCG C8 C Y N 288 LCG C4 C Y N 289 LCG N7 N Y N 290 LCG C5 C Y N 291 LCG C6 C N N 292 LCG "C2'" C N R 293 LCG O6 O N N 294 LCG "C4'" C N R 295 LCG "C1'" C N R 296 LCG C2 C N N 297 LCG N1 N N N 298 LCG "O4'" O N N 299 LCG OP2 O N N 300 LCG N2 N N N 301 LCG N3 N N N 302 LCG "O2'" O N N 303 LCG "O3'" O N N 304 LCG OP3 O N N 305 LCG "H5'" H N N 306 LCG "H5''" H N N 307 LCG "H3'" H N N 308 LCG "H6'1" H N N 309 LCG "H6'2" H N N 310 LCG H8 H N N 311 LCG "H2'" H N N 312 LCG "H1'" H N N 313 LCG H1 H N N 314 LCG HOP2 H N N 315 LCG H21 H N N 316 LCG H22 H N N 317 LCG "HO3'" H N N 318 LCG HOP3 H N N 319 U OP3 O N N 320 U P P N N 321 U OP1 O N N 322 U OP2 O N N 323 U "O5'" O N N 324 U "C5'" C N N 325 U "C4'" C N R 326 U "O4'" O N N 327 U "C3'" C N S 328 U "O3'" O N N 329 U "C2'" C N R 330 U "O2'" O N N 331 U "C1'" C N R 332 U N1 N N N 333 U C2 C N N 334 U O2 O N N 335 U N3 N N N 336 U C4 C N N 337 U O4 O N N 338 U C5 C N N 339 U C6 C N N 340 U HOP3 H N N 341 U HOP2 H N N 342 U "H5'" H N N 343 U "H5''" H N N 344 U "H4'" H N N 345 U "H3'" H N N 346 U "HO3'" H N N 347 U "H2'" H N N 348 U "HO2'" H N N 349 U "H1'" H N N 350 U H3 H N N 351 U H5 H N N 352 U H6 H N N 353 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 EQ1 O2G PG doub N N 76 EQ1 PG O1G sing N N 77 EQ1 PG O5E sing N N 78 EQ1 PG N2C sing N N 79 EQ1 C2C N2C sing Y N 80 EQ1 C2C C3C doub Y N 81 EQ1 O5E C5E sing N N 82 EQ1 C5E C4E sing N N 83 EQ1 N2C C1C doub Y N 84 EQ1 O3E C3E sing N N 85 EQ1 C3C N1C sing Y N 86 EQ1 C3E C4E sing N N 87 EQ1 C3E C2E sing N N 88 EQ1 C1C N1C sing Y N 89 EQ1 C1C N3C sing N N 90 EQ1 C4E O4E sing N N 91 EQ1 N1C PA sing N N 92 EQ1 C2E O2E sing N N 93 EQ1 C2E C1E sing N N 94 EQ1 O4E C1E sing N N 95 EQ1 O3D C3D sing N N 96 EQ1 PA O2A doub N N 97 EQ1 PA O1A sing N N 98 EQ1 PA O5D sing N N 99 EQ1 C8B N7B doub Y N 100 EQ1 C8B N9B sing Y N 101 EQ1 C1E N9B sing N N 102 EQ1 N7B C5B sing Y N 103 EQ1 N9B C4B sing Y N 104 EQ1 C5B C4B doub Y N 105 EQ1 C5B C6B sing N N 106 EQ1 C4B N3B sing N N 107 EQ1 C3D C4D sing N N 108 EQ1 C3D C2D sing N N 109 EQ1 O6B C6B doub N N 110 EQ1 C6B N1B sing N N 111 EQ1 N3B C2B doub N N 112 EQ1 C5D O5D sing N N 113 EQ1 C5D C4D sing N N 114 EQ1 N1B C2B sing N N 115 EQ1 C2B N2B sing N N 116 EQ1 C4D O4D sing N N 117 EQ1 C2D O2D sing N N 118 EQ1 C2D C1D sing N N 119 EQ1 C8A N7A doub Y N 120 EQ1 C8A N9A sing Y N 121 EQ1 N7A C5A sing Y N 122 EQ1 O4D C1D sing N N 123 EQ1 N9A C1D sing N N 124 EQ1 N9A C4A sing Y N 125 EQ1 C5A C4A doub Y N 126 EQ1 C5A C6A sing N N 127 EQ1 C4A N3A sing N N 128 EQ1 O6A C6A doub N N 129 EQ1 C6A N1A sing N N 130 EQ1 N3A C2A doub N N 131 EQ1 N1A C2A sing N N 132 EQ1 C2A N2A sing N N 133 EQ1 C1D H1 sing N N 134 EQ1 C1E H2 sing N N 135 EQ1 N1A H3 sing N N 136 EQ1 N1B H4 sing N N 137 EQ1 O1A H5 sing N N 138 EQ1 O1G H6 sing N N 139 EQ1 C2C H7 sing N N 140 EQ1 C2D H8 sing N N 141 EQ1 C2E H9 sing N N 142 EQ1 N2A H10 sing N N 143 EQ1 N2A H11 sing N N 144 EQ1 N2B H12 sing N N 145 EQ1 N2B H13 sing N N 146 EQ1 O2D H14 sing N N 147 EQ1 O2E H15 sing N N 148 EQ1 C3C H16 sing N N 149 EQ1 C3D H17 sing N N 150 EQ1 C3E H18 sing N N 151 EQ1 N3C H19 sing N N 152 EQ1 N3C H20 sing N N 153 EQ1 O3D H21 sing N N 154 EQ1 O3E H22 sing N N 155 EQ1 C4D H23 sing N N 156 EQ1 C4E H24 sing N N 157 EQ1 C5D H25 sing N N 158 EQ1 C5D H26 sing N N 159 EQ1 C5E H27 sing N N 160 EQ1 C5E H28 sing N N 161 EQ1 C8A H29 sing N N 162 EQ1 C8B H30 sing N N 163 EQ4 C12 N7 sing Y N 164 EQ4 C12 C11 doub Y N 165 EQ4 N7 C13 doub Y N 166 EQ4 C11 N6 sing Y N 167 EQ4 C13 N8 sing N N 168 EQ4 C13 N6 sing Y N 169 EQ4 N6 P1 sing N N 170 EQ4 O2 P1 doub N N 171 EQ4 O5 C3 sing N N 172 EQ4 P1 O3 sing N N 173 EQ4 P1 O1 sing N N 174 EQ4 O3 C1 sing N N 175 EQ4 C3 C2 sing N N 176 EQ4 C3 C4 sing N N 177 EQ4 O6 C4 sing N N 178 EQ4 C2 C1 sing N N 179 EQ4 C2 O4 sing N N 180 EQ4 C4 C5 sing N N 181 EQ4 O4 C5 sing N N 182 EQ4 C5 N5 sing N N 183 EQ4 C10 N5 sing Y N 184 EQ4 C10 N4 doub Y N 185 EQ4 N5 C7 sing Y N 186 EQ4 N4 C8 sing Y N 187 EQ4 C7 C8 doub Y N 188 EQ4 C7 N3 sing N N 189 EQ4 C8 C9 sing N N 190 EQ4 N3 C6 doub N N 191 EQ4 C9 O7 doub N N 192 EQ4 C9 N1 sing N N 193 EQ4 C6 N1 sing N N 194 EQ4 C6 N2 sing N N 195 EQ4 O1 H1 sing N N 196 EQ4 C1 H2 sing N N 197 EQ4 C1 H3 sing N N 198 EQ4 C2 H4 sing N N 199 EQ4 C3 H5 sing N N 200 EQ4 O5 H6 sing N N 201 EQ4 C4 H7 sing N N 202 EQ4 O6 H8 sing N N 203 EQ4 C5 H9 sing N N 204 EQ4 N1 H10 sing N N 205 EQ4 N2 H11 sing N N 206 EQ4 N2 H12 sing N N 207 EQ4 C10 H13 sing N N 208 EQ4 C11 H14 sing N N 209 EQ4 C12 H15 sing N N 210 EQ4 N8 H16 sing N N 211 EQ4 N8 H17 sing N N 212 G OP3 P sing N N 213 G OP3 HOP3 sing N N 214 G P OP1 doub N N 215 G P OP2 sing N N 216 G P "O5'" sing N N 217 G OP2 HOP2 sing N N 218 G "O5'" "C5'" sing N N 219 G "C5'" "C4'" sing N N 220 G "C5'" "H5'" sing N N 221 G "C5'" "H5''" sing N N 222 G "C4'" "O4'" sing N N 223 G "C4'" "C3'" sing N N 224 G "C4'" "H4'" sing N N 225 G "O4'" "C1'" sing N N 226 G "C3'" "O3'" sing N N 227 G "C3'" "C2'" sing N N 228 G "C3'" "H3'" sing N N 229 G "O3'" "HO3'" sing N N 230 G "C2'" "O2'" sing N N 231 G "C2'" "C1'" sing N N 232 G "C2'" "H2'" sing N N 233 G "O2'" "HO2'" sing N N 234 G "C1'" N9 sing N N 235 G "C1'" "H1'" sing N N 236 G N9 C8 sing Y N 237 G N9 C4 sing Y N 238 G C8 N7 doub Y N 239 G C8 H8 sing N N 240 G N7 C5 sing Y N 241 G C5 C6 sing N N 242 G C5 C4 doub Y N 243 G C6 O6 doub N N 244 G C6 N1 sing N N 245 G N1 C2 sing N N 246 G N1 H1 sing N N 247 G C2 N2 sing N N 248 G C2 N3 doub N N 249 G N2 H21 sing N N 250 G N2 H22 sing N N 251 G N3 C4 sing N N 252 HOH O H1 sing N N 253 HOH O H2 sing N N 254 LCC "O5'" "C5'" sing N N 255 LCC "O5'" P sing N N 256 LCC "C5'" "C4'" sing N N 257 LCC "C5'" "H5'1" sing N N 258 LCC "C5'" "H5'2" sing N N 259 LCC "C4'" "O4'" sing N N 260 LCC "C4'" "C3'" sing N N 261 LCC "C4'" "C6'" sing N N 262 LCC "O4'" "C1'" sing N N 263 LCC "C1'" N1 sing N N 264 LCC "C1'" "C2'" sing N N 265 LCC "C1'" "H1'" sing N N 266 LCC N1 C6 sing N N 267 LCC N1 C2 sing N N 268 LCC C6 C5 doub N N 269 LCC C6 H6 sing N N 270 LCC C5 C5M sing N N 271 LCC C5 C4 sing N N 272 LCC C5M H5M1 sing N N 273 LCC C5M H5M2 sing N N 274 LCC C5M H5M3 sing N N 275 LCC C4 N4 sing N N 276 LCC C4 N3 doub N N 277 LCC N4 H41 sing N N 278 LCC N4 H42 sing N N 279 LCC N3 C2 sing N N 280 LCC C2 O2 doub N N 281 LCC "C3'" "C2'" sing N N 282 LCC "C3'" "O3'" sing N N 283 LCC "C3'" "H3'" sing N N 284 LCC "C2'" "O2'" sing N N 285 LCC "C2'" "H2'1" sing N N 286 LCC "O2'" "C6'" sing N N 287 LCC "O3'" H3T sing N N 288 LCC "C6'" "H6'1" sing N N 289 LCC "C6'" "H6'2" sing N N 290 LCC P O1P sing N N 291 LCC P O2P doub N N 292 LCC P OXT sing N N 293 LCC O1P H1P sing N N 294 LCC OXT HXT sing N N 295 LCG P OP1 doub N N 296 LCG P "O5'" sing N N 297 LCG P OP2 sing N N 298 LCG P OP3 sing N N 299 LCG "O5'" "C5'" sing N N 300 LCG "C5'" "C4'" sing N N 301 LCG "C5'" "H5'" sing N N 302 LCG "C5'" "H5''" sing N N 303 LCG "C3'" "C2'" sing N N 304 LCG "C3'" "C4'" sing N N 305 LCG "C3'" "O3'" sing N N 306 LCG "C3'" "H3'" sing N N 307 LCG "C6'" "C4'" sing N N 308 LCG "C6'" "O2'" sing N N 309 LCG "C6'" "H6'1" sing N N 310 LCG "C6'" "H6'2" sing N N 311 LCG N9 C8 sing Y N 312 LCG N9 C4 sing Y N 313 LCG N9 "C1'" sing N N 314 LCG C8 N7 doub Y N 315 LCG C8 H8 sing N N 316 LCG C4 C5 doub Y N 317 LCG C4 N3 sing N N 318 LCG N7 C5 sing Y N 319 LCG C5 C6 sing N N 320 LCG C6 O6 doub N N 321 LCG C6 N1 sing N N 322 LCG "C2'" "C1'" sing N N 323 LCG "C2'" "O2'" sing N N 324 LCG "C2'" "H2'" sing N N 325 LCG "C4'" "O4'" sing N N 326 LCG "C1'" "O4'" sing N N 327 LCG "C1'" "H1'" sing N N 328 LCG C2 N1 sing N N 329 LCG C2 N2 sing N N 330 LCG C2 N3 doub N N 331 LCG N1 H1 sing N N 332 LCG OP2 HOP2 sing N N 333 LCG N2 H21 sing N N 334 LCG N2 H22 sing N N 335 LCG "O3'" "HO3'" sing N N 336 LCG OP3 HOP3 sing N N 337 U OP3 P sing N N 338 U OP3 HOP3 sing N N 339 U P OP1 doub N N 340 U P OP2 sing N N 341 U P "O5'" sing N N 342 U OP2 HOP2 sing N N 343 U "O5'" "C5'" sing N N 344 U "C5'" "C4'" sing N N 345 U "C5'" "H5'" sing N N 346 U "C5'" "H5''" sing N N 347 U "C4'" "O4'" sing N N 348 U "C4'" "C3'" sing N N 349 U "C4'" "H4'" sing N N 350 U "O4'" "C1'" sing N N 351 U "C3'" "O3'" sing N N 352 U "C3'" "C2'" sing N N 353 U "C3'" "H3'" sing N N 354 U "O3'" "HO3'" sing N N 355 U "C2'" "O2'" sing N N 356 U "C2'" "C1'" sing N N 357 U "C2'" "H2'" sing N N 358 U "O2'" "HO2'" sing N N 359 U "C1'" N1 sing N N 360 U "C1'" "H1'" sing N N 361 U N1 C2 sing N N 362 U N1 C6 sing N N 363 U C2 O2 doub N N 364 U C2 N3 sing N N 365 U N3 C4 sing N N 366 U N3 H3 sing N N 367 U C4 O4 doub N N 368 U C4 C5 sing N N 369 U C5 C6 doub N N 370 U C5 H5 sing N N 371 U C6 H6 sing N N 372 # _ndb_struct_conf_na.entry_id 6C8M _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.334 -0.543 0.424 3.666 -10.253 -2.510 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 -0.468 -0.019 0.546 7.892 -10.071 0.085 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 -0.168 0.126 0.157 14.336 -12.792 -1.239 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.045 -0.394 -0.989 -0.562 -22.417 2.224 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.127 -0.042 -0.084 -3.973 -8.355 5.822 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.158 -0.055 -0.260 1.693 -11.206 1.629 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 -0.146 -0.225 -0.301 4.139 -14.332 0.247 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 0.489 0.510 -0.010 -8.900 -11.653 15.690 8 A_G11:C6_B A 11 ? B 6 ? ? 1 1 A U 12 1_555 B A 5 1_555 0.033 -0.112 0.308 -7.301 -5.132 -4.956 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.454 -0.627 0.729 -8.261 -9.722 -4.581 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.259 -1.475 3.094 -0.192 2.068 31.984 -3.018 0.437 2.996 3.748 0.347 32.050 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.470 -1.491 3.159 4.287 2.779 35.237 -2.825 -0.171 3.071 4.560 -7.036 35.594 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.568 -1.635 3.497 6.516 13.969 29.506 -5.079 2.029 2.335 25.363 -11.831 33.210 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 0.267 -0.982 3.477 -9.098 11.633 27.521 -4.038 -2.226 2.643 22.515 17.609 31.165 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 -0.209 -1.272 3.168 1.114 16.702 31.836 -4.172 0.480 2.238 28.148 -1.877 35.867 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.052 -1.147 3.169 1.785 8.478 30.621 -3.527 0.396 2.754 15.665 -3.299 31.795 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.998 -1.506 3.498 1.477 11.827 35.148 -3.965 -1.371 2.897 18.924 -2.364 37.054 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -1.138 -1.578 3.225 -4.677 4.475 28.993 -4.000 1.260 3.094 8.801 9.198 29.692 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.501 -1.498 3.256 -3.039 4.730 33.792 -3.257 -1.310 2.971 8.068 5.183 34.243 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # _pdbx_audit_support.funding_organization 'Howard Hughes Medical Institute (HHMI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DHC _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6C8M _atom_sites.fract_transf_matrix[1][1] 0.020888 _atom_sites.fract_transf_matrix[1][2] 0.012060 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024120 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012087 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_