HEADER RNA 25-JAN-18 6C8N TITLE RNA-ACTIVATED 2-AIPG MONOMER COMPLEX, 2H SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG) COMPND 3 P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, ACTIVATED MONOMER EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,J.W.SZOSTAK REVDAT 4 04-OCT-23 6C8N 1 LINK REVDAT 3 20-NOV-19 6C8N 1 REMARK REVDAT 2 31-OCT-18 6C8N 1 JRNL REVDAT 1 30-MAY-18 6C8N 0 JRNL AUTH W.ZHANG,T.WALTON,L.LI,J.W.SZOSTAK JRNL TITL CRYSTALLOGRAPHIC OBSERVATION OF NONENZYMATIC RNA PRIMER JRNL TITL 2 EXTENSION. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29851379 JRNL DOI 10.7554/ELIFE.36422 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 7516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 405 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 644 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 896 ; 0.025 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 360 ; 0.066 ; 0.024 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1390 ; 2.660 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): 890 ; 4.100 ; 3.235 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 446 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 144 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 3.075 ; 4.185 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 895 ; 3.074 ; 4.185 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1391 ; 4.318 ; 6.277 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1309 ; 4.799 ;38.225 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1301 ; 4.786 ;38.097 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V (+/-)-2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 0.040 M SODIUM CACODYLATE TRIHYDRATE PH 7.0, 0.012 REMARK 280 M SPERMINE TETRAHYDROCHLORIDE, 0.080 M SODIUM CHLORIDE, 0.020 M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 105 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 212 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 217 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 210 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LCC A 2 O3' LCC A 3 P 0.075 REMARK 500 LCC B 2 O3' LCC B 3 P 0.084 REMARK 500 LCC B 3 O3' LCG B 4 P 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LCC A 1 C3' - O3' - P ANGL. DEV. = -11.3 DEGREES REMARK 500 LCC A 2 O3' - P - O5' ANGL. DEV. = 20.7 DEGREES REMARK 500 LCC B 1 C3' - O3' - P ANGL. DEV. = -17.9 DEGREES REMARK 500 LCC B 2 O3' - P - O5' ANGL. DEV. = 18.6 DEGREES REMARK 500 LCC B 3 O3' - P - O5' ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 15 O3' REMARK 620 2 G A 15 O2' 69.4 REMARK 620 3 G A 15 O3' 0.0 69.4 REMARK 620 4 G A 15 O2' 69.4 0.0 69.4 REMARK 620 5 EQ1 A 102 O2D 58.3 11.6 58.3 11.6 REMARK 620 6 EQ1 A 102 O3D 20.0 67.7 20.0 67.7 58.5 REMARK 620 7 EQ1 A 102 O2D 58.3 11.6 58.3 11.6 0.0 58.5 REMARK 620 8 EQ1 A 102 O3D 20.0 67.7 20.0 67.7 58.5 0.0 58.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 HOH A 206 O 89.8 REMARK 620 3 HOH A 207 O 88.9 94.1 REMARK 620 4 HOH B 206 O 80.3 170.1 86.4 REMARK 620 5 HOH B 208 O 86.5 86.3 175.4 92.4 REMARK 620 6 HOH B 212 O 173.9 94.2 95.4 95.7 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 209 O 97.5 REMARK 620 3 HOH A 215 O 85.9 94.2 REMARK 620 4 HOH B 201 O 88.9 82.0 173.0 REMARK 620 5 HOH B 204 O 177.9 84.1 92.7 92.7 REMARK 620 6 HOH B 205 O 87.5 172.8 91.2 93.1 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 15 O3' REMARK 620 2 G B 15 O2' 69.9 REMARK 620 3 G B 15 O3' 0.0 69.9 REMARK 620 4 G B 15 O2' 69.9 0.0 69.9 REMARK 620 5 EQ1 B 102 O2D 66.4 22.3 66.4 22.3 REMARK 620 6 EQ1 B 102 O3D 13.2 64.8 13.2 64.8 66.7 REMARK 620 7 EQ1 B 102 O2D 66.4 22.3 66.4 22.3 0.0 66.7 REMARK 620 8 EQ1 B 102 O3D 13.2 64.8 13.2 64.8 66.7 0.0 66.7 REMARK 620 N 1 2 3 4 5 6 7 DBREF 6C8N A 1 15 PDB 6C8N 6C8N 1 15 DBREF 6C8N B 1 15 PDB 6C8N 6C8N 1 15 SEQRES 1 A 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 A 15 G G SEQRES 1 B 15 LCC LCC LCC LCG A C U U A A G U C SEQRES 2 B 15 G G HET LCC A 1 19 HET LCC A 2 22 HET LCC A 3 22 HET LCG A 4 24 HET LCC B 1 19 HET LCC B 2 22 HET LCC B 3 22 HET LCG B 4 24 HET EQ4 A 101 29 HET EQ1 A 102 52 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET EQ4 B 101 29 HET EQ1 B 102 52 HET MG B 103 1 HETNAM LCC [(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5- HETNAM 2 LCC DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCC PHOSPHATE HETNAM LCG [(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5- HETNAM 2 LCG DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN HETNAM 3 LCG PHOSPHATE HETNAM EQ4 5'-O-[(R)-(2-AMINO-1H-IMIDAZOL-1-YL)(HYDROXY) HETNAM 2 EQ4 PHOSPHORYL]GUANOSINE HETNAM EQ1 [2-AZANYL-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 2 EQ1 OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETNAM 3 EQ1 OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]IMIDAZOL-1- HETNAM 4 EQ1 YL]-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETNAM 5 EQ1 OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETNAM 6 EQ1 OXOLAN-2-YL]METHOXY]PHOSPHINIC ACID HETNAM MG MAGNESIUM ION FORMUL 1 LCC 6(C11 H16 N3 O8 P) FORMUL 1 LCG 2(C11 H14 N5 O8 P) FORMUL 3 EQ4 2(C13 H17 N8 O7 P) FORMUL 4 EQ1 2(C23 H30 N13 O14 P2) FORMUL 5 MG 4(MG 2+) FORMUL 11 HOH *30(H2 O) LINK O3' LCC A 1 P LCC A 2 1555 1555 1.68 LINK O3' LCC A 2 P LCC A 3 1555 1555 1.68 LINK O3' LCC A 3 P LCG A 4 1555 1555 1.66 LINK O3' LCG A 4 P A A 5 1555 1555 1.62 LINK P A G A 15 O2ABEQ1 A 102 1555 1555 1.54 LINK C4'A G A 15 C4DBEQ1 A 102 1555 1555 1.22 LINK C4'A G A 15 O4DBEQ1 A 102 1555 1555 1.17 LINK C3'A G A 15 C2DBEQ1 A 102 1555 1555 1.43 LINK C3'A G A 15 C4DBEQ1 A 102 1555 1555 1.08 LINK C2'A G A 15 C1DBEQ1 A 102 1555 1555 1.64 LINK C2'A G A 15 O2DBEQ1 A 102 1555 1555 1.10 LINK C1'A G A 15 C2DBEQ1 A 102 1555 1555 1.50 LINK N9 A G A 15 C1DBEQ1 A 102 1555 1555 1.49 LINK C8 A G A 15 C4ABEQ1 A 102 1555 1555 1.54 LINK C8 A G A 15 N7ABEQ1 A 102 1555 1555 1.27 LINK C5 A G A 15 C4ABEQ1 A 102 1555 1555 1.20 LINK C5 A G A 15 C6ABEQ1 A 102 1555 1555 1.13 LINK O6 A G A 15 C6ABEQ1 A 102 1555 1555 1.37 LINK N3 A G A 15 C2ABEQ1 A 102 1555 1555 1.35 LINK P1 AEQ4 A 101 O2GBEQ1 B 102 1555 1555 1.65 LINK P1 AEQ4 A 101 PG BEQ1 B 102 1555 1555 2.21 LINK C1 AEQ4 A 101 C4EBEQ1 B 102 1555 1555 1.46 LINK C2 AEQ4 A 101 C5EBEQ1 B 102 1555 1555 1.44 LINK C2 AEQ4 A 101 O4EBEQ1 B 102 1555 1555 1.21 LINK C3 AEQ4 A 101 C2EBEQ1 B 102 1555 1555 1.60 LINK C3 AEQ4 A 101 C3EBEQ1 B 102 1555 1555 1.10 LINK C3 AEQ4 A 101 C4EBEQ1 B 102 1555 1555 1.63 LINK C4 AEQ4 A 101 N9BBEQ1 B 102 1555 1555 1.45 LINK C4 AEQ4 A 101 C2EBEQ1 B 102 1555 1555 1.10 LINK O6 AEQ4 A 101 C1EBEQ1 B 102 1555 1555 1.22 LINK C5 AEQ4 A 101 C1EBEQ1 B 102 1555 1555 1.25 LINK C5 AEQ4 A 101 C8BBEQ1 B 102 1555 1555 1.30 LINK C6 AEQ4 A 101 N2BBEQ1 B 102 1555 1555 1.58 LINK N3 AEQ4 A 101 C4BBEQ1 B 102 1555 1555 1.21 LINK C7 AEQ4 A 101 C6BBEQ1 B 102 1555 1555 1.42 LINK C8 AEQ4 A 101 C5BBEQ1 B 102 1555 1555 1.09 LINK C8 AEQ4 A 101 O6BBEQ1 B 102 1555 1555 1.20 LINK N4 AEQ4 A 101 N7BBEQ1 B 102 1555 1555 1.29 LINK C10AEQ4 A 101 C8BBEQ1 B 102 1555 1555 1.37 LINK N5 AEQ4 A 101 C4BBEQ1 B 102 1555 1555 1.40 LINK N5 AEQ4 A 101 C5BBEQ1 B 102 1555 1555 1.28 LINK N5 AEQ4 A 101 N9BBEQ1 B 102 1555 1555 1.21 LINK N6 AEQ4 A 101 O2GBEQ1 B 102 1555 1555 1.47 LINK C1CBEQ1 A 102 O1 AEQ4 B 101 1555 1555 1.23 LINK C1EBEQ1 A 102 O4 AEQ4 B 101 1555 1555 1.45 LINK C1EBEQ1 A 102 C10AEQ4 B 101 1555 1555 1.35 LINK C1EBEQ1 A 102 C5 AEQ4 B 101 1555 1555 1.44 LINK N1BBEQ1 A 102 C9 AEQ4 B 101 1555 1555 1.29 LINK C2BBEQ1 A 102 N3 AEQ4 B 101 1555 1555 1.34 LINK C2EBEQ1 A 102 O4 AEQ4 B 101 1555 1555 1.44 LINK C2EBEQ1 A 102 C3 AEQ4 B 101 1555 1555 1.48 LINK C2EBEQ1 A 102 C4 AEQ4 B 101 1555 1555 1.35 LINK C2EBEQ1 A 102 C5 AEQ4 B 101 1555 1555 1.10 LINK N2CBEQ1 A 102 O1 AEQ4 B 101 1555 1555 1.19 LINK O2EBEQ1 A 102 C5 AEQ4 B 101 1555 1555 1.12 LINK C3EBEQ1 A 102 C3 AEQ4 B 101 1555 1555 1.32 LINK C3EBEQ1 A 102 C1 AEQ4 B 101 1555 1555 1.43 LINK N3BBEQ1 A 102 C6 AEQ4 B 101 1555 1555 1.57 LINK O3EBEQ1 A 102 C1 AEQ4 B 101 1555 1555 1.35 LINK C4BBEQ1 A 102 N4 AEQ4 B 101 1555 1555 1.43 LINK C5BBEQ1 A 102 C9 AEQ4 B 101 1555 1555 1.13 LINK C5BBEQ1 A 102 N4 AEQ4 B 101 1555 1555 1.42 LINK C5EBEQ1 A 102 C11AEQ4 B 101 1555 1555 1.50 LINK C8BBEQ1 A 102 C10AEQ4 B 101 1555 1555 1.26 LINK N9BBEQ1 A 102 N4 AEQ4 B 101 1555 1555 1.15 LINK O3' LCC B 1 P LCC B 2 1555 1555 1.66 LINK O3' LCC B 2 P LCC B 3 1555 1555 1.69 LINK O3' LCC B 3 P LCG B 4 1555 1555 1.70 LINK O3' LCG B 4 P A B 5 1555 1555 1.66 LINK C4'A G B 15 C4DBEQ1 B 102 1555 1555 1.10 LINK C4'A G B 15 O4DBEQ1 B 102 1555 1555 1.31 LINK C3'A G B 15 C4DBEQ1 B 102 1555 1555 1.16 LINK C3'A G B 15 C2DBEQ1 B 102 1555 1555 1.58 LINK C3'A G B 15 O3DBEQ1 B 102 1555 1555 1.45 LINK C2'A G B 15 C3DBEQ1 B 102 1555 1555 1.34 LINK O2'A G B 15 C2DBEQ1 B 102 1555 1555 1.27 LINK C1'A G B 15 C2DBEQ1 B 102 1555 1555 1.40 LINK C1'A G B 15 N9ABEQ1 B 102 1555 1555 1.34 LINK N9 A G B 15 C8ABEQ1 B 102 1555 1555 1.43 LINK C8 A G B 15 N9ABEQ1 B 102 1555 1555 1.33 LINK C5 A G B 15 N7ABEQ1 B 102 1555 1555 1.60 LINK C5 A G B 15 C4ABEQ1 B 102 1555 1555 1.44 LINK C6 A G B 15 O6ABEQ1 B 102 1555 1555 1.27 LINK O6 A G B 15 C6ABEQ1 B 102 1555 1555 1.43 LINK N1 A G B 15 C2ABEQ1 B 102 1555 1555 1.29 LINK C2 A G B 15 N1ABEQ1 B 102 1555 1555 1.53 LINK C2 A G B 15 N3ABEQ1 B 102 1555 1555 1.44 LINK N2 A G B 15 C2ABEQ1 B 102 1555 1555 1.54 LINK N3 A G B 15 C2ABEQ1 B 102 1555 1555 1.25 LINK N3 A G B 15 C4ABEQ1 B 102 1555 1555 1.57 LINK C4 A G B 15 C5ABEQ1 B 102 1555 1555 1.35 LINK O3'A G A 15 MG MG A 105 1555 1555 2.35 LINK O2'A G A 15 MG MG A 105 1555 1555 2.52 LINK O3'A G A 15 MG MG A 105 1555 2545 2.27 LINK O2'A G A 15 MG MG A 105 1555 3655 2.44 LINK O2DBEQ1 A 102 MG MG A 105 1555 1555 2.46 LINK O3DBEQ1 A 102 MG MG A 105 1555 1555 2.76 LINK O2DBEQ1 A 102 MG MG A 105 1555 3655 2.38 LINK O3DBEQ1 A 102 MG MG A 105 1555 3655 2.68 LINK MG MG A 103 O HOH A 202 1555 2545 2.17 LINK MG MG A 103 O HOH A 206 1555 2545 2.07 LINK MG MG A 103 O HOH A 207 1555 1555 2.02 LINK MG MG A 103 O HOH B 206 1555 2545 2.10 LINK MG MG A 103 O HOH B 208 1555 2545 1.96 LINK MG MG A 103 O HOH B 212 1555 2545 1.99 LINK MG MG A 104 O HOH A 208 1555 1555 1.99 LINK MG MG A 104 O HOH A 209 1555 1555 2.06 LINK MG MG A 104 O HOH A 215 1555 1555 2.07 LINK MG MG A 104 O HOH B 201 1555 1555 2.14 LINK MG MG A 104 O HOH B 204 1555 2545 2.07 LINK MG MG A 104 O HOH B 205 1555 1555 1.97 LINK O3'A G B 15 MG MG B 103 1555 1555 2.34 LINK O2'A G B 15 MG MG B 103 1555 1555 2.59 LINK O3'A G B 15 MG MG B 103 1555 3655 2.29 LINK O2'A G B 15 MG MG B 103 1555 2545 2.53 LINK O2DBEQ1 B 102 MG MG B 103 1555 1555 2.36 LINK O3DBEQ1 B 102 MG MG B 103 1555 1555 2.52 LINK O2DBEQ1 B 102 MG MG B 103 1555 2545 2.31 LINK O3DBEQ1 B 102 MG MG B 103 1555 2545 2.47 CRYST1 46.975 46.975 83.097 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021288 0.012291 0.000000 0.00000 SCALE2 0.000000 0.024581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012034 0.00000 HETATM 1 O5' LCC A 1 16.027 5.145 79.520 1.00 47.28 O HETATM 2 C5' LCC A 1 17.361 5.699 79.686 1.00 43.79 C HETATM 3 C4' LCC A 1 18.222 4.444 79.966 1.00 42.72 C HETATM 4 O4' LCC A 1 17.806 3.728 81.144 1.00 43.74 O HETATM 5 C1' LCC A 1 18.331 2.413 80.993 1.00 40.48 C HETATM 6 N1 LCC A 1 17.267 1.358 81.147 1.00 39.50 N HETATM 7 C6 LCC A 1 15.851 1.668 81.043 1.00 37.67 C HETATM 8 C5 LCC A 1 14.948 0.617 81.228 1.00 41.65 C HETATM 9 C5M LCC A 1 13.554 0.779 81.166 1.00 44.52 C HETATM 10 C4 LCC A 1 15.487 -0.663 81.488 1.00 41.94 C HETATM 11 N4 LCC A 1 14.666 -1.722 81.659 1.00 41.34 N HETATM 12 N3 LCC A 1 16.806 -0.872 81.530 1.00 37.07 N HETATM 13 C2 LCC A 1 17.700 0.093 81.387 1.00 37.51 C HETATM 14 O2 LCC A 1 18.901 -0.248 81.456 1.00 34.57 O HETATM 15 C3' LCC A 1 18.085 3.405 78.951 1.00 41.22 C HETATM 16 C2' LCC A 1 19.001 2.510 79.625 1.00 40.16 C HETATM 17 O2' LCC A 1 20.189 3.312 79.757 1.00 42.43 O HETATM 18 O3' LCC A 1 18.607 4.010 77.784 1.00 40.57 O HETATM 19 C6' LCC A 1 19.737 4.703 79.979 1.00 43.69 C HETATM 20 O5' LCC A 2 19.618 1.538 76.537 1.00 33.07 O HETATM 21 C5' LCC A 2 21.034 1.741 76.452 1.00 33.26 C HETATM 22 C4' LCC A 2 21.516 0.366 76.894 1.00 33.73 C HETATM 23 O4' LCC A 2 20.929 -0.073 78.121 1.00 37.24 O HETATM 24 C1' LCC A 2 21.133 -1.468 78.126 1.00 34.38 C HETATM 25 N1 LCC A 2 19.833 -2.118 78.280 1.00 31.12 N HETATM 26 C6 LCC A 2 18.632 -1.399 78.148 1.00 34.81 C HETATM 27 C5 LCC A 2 17.435 -2.065 78.335 1.00 35.14 C HETATM 28 C5M LCC A 2 16.241 -1.338 78.179 1.00 37.28 C HETATM 29 C4 LCC A 2 17.488 -3.438 78.669 1.00 33.14 C HETATM 30 N4 LCC A 2 16.348 -4.088 78.827 1.00 32.98 N HETATM 31 N3 LCC A 2 18.649 -4.083 78.797 1.00 31.77 N HETATM 32 C2 LCC A 2 19.818 -3.429 78.591 1.00 33.38 C HETATM 33 O2 LCC A 2 20.900 -4.048 78.688 1.00 33.75 O HETATM 34 C3' LCC A 2 21.076 -0.778 76.019 1.00 35.62 C HETATM 35 C2' LCC A 2 21.789 -1.749 76.798 1.00 35.20 C HETATM 36 O2' LCC A 2 23.159 -1.199 76.830 1.00 34.91 O HETATM 37 O3' LCC A 2 21.755 -0.702 74.805 1.00 40.42 O HETATM 38 C6' LCC A 2 23.013 0.274 77.013 1.00 33.75 C HETATM 39 P LCC A 2 18.634 2.866 76.561 1.00 39.93 P HETATM 40 O1P LCC A 2 17.114 2.187 76.396 1.00 37.19 O1- HETATM 41 O2P LCC A 2 19.174 3.898 75.478 1.00 32.28 O HETATM 42 O5' LCC A 3 21.461 -2.739 73.599 1.00 31.74 O HETATM 43 C5' LCC A 3 22.864 -3.098 73.487 1.00 31.42 C HETATM 44 C4' LCC A 3 22.924 -4.568 73.935 1.00 31.18 C HETATM 45 O4' LCC A 3 22.232 -4.820 75.183 1.00 30.90 O HETATM 46 C1' LCC A 3 22.001 -6.181 75.189 1.00 28.75 C HETATM 47 N1 LCC A 3 20.569 -6.227 75.364 1.00 27.12 N HETATM 48 C6 LCC A 3 19.729 -5.086 75.202 1.00 28.95 C HETATM 49 C5 LCC A 3 18.358 -5.260 75.455 1.00 32.73 C HETATM 50 C5M LCC A 3 17.469 -4.181 75.266 1.00 34.30 C HETATM 51 C4 LCC A 3 17.918 -6.520 75.884 1.00 32.09 C HETATM 52 N4 LCC A 3 16.629 -6.674 76.154 1.00 31.59 N HETATM 53 N3 LCC A 3 18.753 -7.580 76.009 1.00 27.63 N HETATM 54 C2 LCC A 3 20.050 -7.431 75.760 1.00 29.50 C HETATM 55 O2 LCC A 3 20.756 -8.462 75.904 1.00 28.50 O HETATM 56 C3' LCC A 3 22.171 -5.522 73.102 1.00 33.90 C HETATM 57 C2' LCC A 3 22.487 -6.686 73.922 1.00 30.90 C HETATM 58 O2' LCC A 3 23.929 -6.645 73.872 1.00 32.69 O HETATM 59 O3' LCC A 3 22.785 -5.673 71.833 1.00 34.74 O HETATM 60 C6' LCC A 3 24.325 -5.171 73.880 1.00 34.11 C HETATM 61 P LCC A 3 20.969 -1.227 73.414 1.00 37.30 P HETATM 62 O1P LCC A 3 19.455 -1.376 73.422 1.00 34.09 O1- HETATM 63 O2P LCC A 3 21.705 -0.606 72.361 1.00 35.39 O HETATM 64 P LCG A 4 21.836 -5.976 70.502 1.00 33.35 P HETATM 65 OP1 LCG A 4 22.650 -5.663 69.286 1.00 38.03 O HETATM 66 O5' LCG A 4 21.625 -7.637 70.655 1.00 30.84 O HETATM 67 C5' LCG A 4 22.683 -8.617 70.508 1.00 31.69 C HETATM 68 C3' LCG A 4 20.924 -10.316 70.116 1.00 33.61 C HETATM 69 C6' LCG A 4 22.830 -11.384 71.003 1.00 45.38 C HETATM 70 N9 LCG A 4 19.346 -10.082 72.623 1.00 29.87 N HETATM 71 C8 LCG A 4 19.088 -8.775 72.632 1.00 28.78 C HETATM 72 C4 LCG A 4 18.264 -10.758 72.951 1.00 30.42 C HETATM 73 N7 LCG A 4 17.801 -8.605 72.971 1.00 30.80 N HETATM 74 C5 LCG A 4 17.277 -9.828 73.185 1.00 33.78 C HETATM 75 C6 LCG A 4 16.056 -10.211 73.525 1.00 31.68 C HETATM 76 C2' LCG A 4 20.469 -11.514 70.952 1.00 32.19 C HETATM 77 O6 LCG A 4 15.124 -9.422 73.808 1.00 32.75 O HETATM 78 C4' LCG A 4 22.031 -9.895 70.998 1.00 33.65 C HETATM 79 C1' LCG A 4 20.514 -10.856 72.331 1.00 32.31 C HETATM 80 C2 LCG A 4 16.833 -12.508 73.339 1.00 30.84 C HETATM 81 N1 LCG A 4 15.838 -11.569 73.579 1.00 31.51 N HETATM 82 O4' LCG A 4 21.460 -9.743 72.275 1.00 33.28 O HETATM 83 OP2 LCG A 4 20.409 -5.420 70.589 1.00 32.72 O1- HETATM 84 N2 LCG A 4 16.489 -13.796 73.416 1.00 30.57 N HETATM 85 N3 LCG A 4 18.076 -12.078 73.000 1.00 29.72 N HETATM 86 O2' LCG A 4 21.530 -12.466 70.919 1.00 28.73 O HETATM 87 O3' LCG A 4 21.575 -10.788 68.893 1.00 34.54 O